Prupe.1G499800_v2.0.a1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0012132
Physical Location & Seq
Reverse (-)
41375172 .. 41377103
1932 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G499800.1

Sequence Viewer

Length: 663 bp
ATGCCAAGACCAAGTTCATTTTTAAGGCAATTGAGTGGAAGGGAGGCTTGGAAATCAACATCAAAGAGGTGGGTTGGTGGAAATAACAAGTCTTGTGGTGGTGGTGGTGGTATTGGGCGCTCTGAGGGAAGCTTGAAGCAAATGGAAGGGCTTAACATGTATGGCAGTGACAATAACAATGGTGGGTTGGCAATGAGGAAGAGATTGATGGTTGTGGTGGATGACTCATCACATTCCAAGCATGCTATGATGTGGGCTCTCACCCATGTAGCAAACAAGGGTGATTTGCTCACTCTCCTTCACATCATCCCTGCTTCCCACGACTCTTCTTCTGTTTCCCCTTACCTTGCCAACTCTCTTGGCTCCCTTTGCAAGGCCTGCAAGCCTGAGGTGGAAGTGGAAGCACTTGTGATCCAAGGACCAAGACTGGGCACAGTGATAAGCCAGGTGAAGAAGCTAGAGGTATCAGTTTTAGTGCTGGGTCAGAAGAAGTCCTCTTCCCTCATCAGCTGCTTATTTGGAAGCAGCGGCACTGAGGACTTTGTGGAGCATTGCATCAACAATGCAGAGTGCTTGACAATTGGAGTGAGGAAGCAGAGCAAGGGTGTGGGTGGCTACCTTATCAACACCAGATGGCAGAAGGATTTCTGGCTCTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

221

Amino Acids

23.72

Weight (kDa)

9.39

Isoelectric Point (pI)

52.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44760 AT1G44760
fragaria_vesca FvH4_2g26790
malus_domestica MD08G1165100.v1.1 MD15G1350900.v1.1
prunus_persica Prupe.1G499800_v2.0.a1
pyrus_communis pycom15g31340
rosa_chinensis RchiOBHm_Chr6g0295651
rosa_laevigata RLG00000011779
rosa_multiflora Rmu_sc0006802.1_g000009 Rmu_sc0015254.1_g000001
rosa_roxburghii Rroxscaffold_7G00172270
rosa_rugosa Rorug06G0253200 Rorug06G0253200
rosa_samantha Rh6AG366200 Rh6BG374400 Rh6CG380600 Rh6DG367500
rosa_wichuraiana Rw6G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 528
AclWI GGATC 1 cut(s) 406
AfiI CCNNNNNNNGG 2 cut(s) 373, 428
AflIII ACRYGT 1 cut(s) 156
AgsI TTSAA 1 cut(s) 136
AjnI CCWGG 1 cut(s) 444
AjuI GAANNNNNNNTTGG 3 cut(s) 30, 31, 63
AluBI AGCT 3 cut(s) 132, 457, 510
AluI AGCT 3 cut(s) 132, 457, 510
AlwI GGATC 1 cut(s) 406
AoxI GGCC 1 cut(s) 375
ApeKI GCWGC 2 cut(s) 510, 525
Asp700I GAANNNNTTC 1 cut(s) 644
AspLEI GCGC 1 cut(s) 120
AspS9I GGNCC 1 cut(s) 419
AsuHPI GGTGA 3 cut(s) 253, 293, 460
AvaII GGWCC 1 cut(s) 419
AxyI CCTNAGG 1 cut(s) 387
BaeGI GKGCMC 1 cut(s) 434
BanII GRGCYC 1 cut(s) 259
BbvI GCAGC 2 cut(s) 497, 537
BccI CCATC 2 cut(s) 202, 627
BciT130I CCWGG 1 cut(s) 446
BfaI CTAG 1 cut(s) 458
BfoI RGCGCY 1 cut(s) 121
BisI GCNGC 3 cut(s) 511, 526, 529
BlsI GCNGC 3 cut(s) 512, 527, 530
Bme1390I CCNGG 1 cut(s) 446
Bme18I GGWCC 1 cut(s) 419
BmgT120I GGNCC 1 cut(s) 419
BmiI GGNNCC 1 cut(s) 364
BmrFI CCNGG 1 cut(s) 446
BmrI ACTGGG 1 cut(s) 437
BmsI GCATC 1 cut(s) 564
BmuI ACTGGG 1 cut(s) 437
BsaJI CCNNGG 1 cut(s) 415
Bsc4I CCNNNNNNNGG 2 cut(s) 373, 428
Bse1I ACTGG 1 cut(s) 432
Bse21I CCTNAGG 1 cut(s) 387
Bse3DI GCAATG 2 cut(s) 198, 550
BseBI CCWGG 1 cut(s) 446
BseDI CCNNGG 1 cut(s) 415
BseGI GGATG 2 cut(s) 226, 306
BseLI CCNNNNNNNGG 2 cut(s) 373, 428
BseMI GCAATG 2 cut(s) 198, 550
BseMII CTCAG 3 cut(s) 114, 378, 525
BseNI ACTGG 1 cut(s) 432
BseSI GKGCMC 1 cut(s) 434
BseXI GCAGC 2 cut(s) 497, 537
BseYI CCCAGC 1 cut(s) 478
BshFI GGCC 1 cut(s) 377
BslI CCNNNNNNNGG 2 cut(s) 373, 428
BsnI GGCC 1 cut(s) 377
Bsp1286I GDGCHC 2 cut(s) 259, 434
Bsp143I GATC 1 cut(s) 411
BspACI CCGC 1 cut(s) 528
BspANI GGCC 1 cut(s) 377
BspCNI CTCAG 3 cut(s) 115, 379, 526
BspLI GGNNCC 1 cut(s) 364
BspPI GGATC 1 cut(s) 406
BsrDI GCAATG 2 cut(s) 198, 550
BsrI ACTGG 1 cut(s) 432
BssECI CCNNGG 1 cut(s) 415
BssMI GATC 1 cut(s) 411
BssT1I CCWWGG 1 cut(s) 415
Bst2UI CCWGG 1 cut(s) 446
Bst4CI ACNGT 1 cut(s) 436
Bst6I CTCTTC 3 cut(s) 194, 331, 502
BstAPI GCANNNNNTGC 1 cut(s) 378
BstC8I GCNNGC 3 cut(s) 243, 379, 383
BstDEI CTNAG 4 cut(s) 123, 387, 534, 660
BstENI CCTNNNNNAGG 1 cut(s) 371
BstF5I GGATG 2 cut(s) 226, 306
BstH2I RGCGCY 1 cut(s) 121
BstHHI GCGC 1 cut(s) 120
BstKTI GATC 1 cut(s) 414
BstMBI GATC 1 cut(s) 411
BstMWI GCNNNNNNNGC 2 cut(s) 369, 378
BstNI CCWGG 1 cut(s) 446
BstNSI RCATGY 2 cut(s) 160, 245
BstSCI CCNGG 1 cut(s) 444
BstSLI GKGCMC 1 cut(s) 434
BstV1I GCAGC 2 cut(s) 497, 537
Bsu36I CCTNAGG 1 cut(s) 387
BsuRI GGCC 1 cut(s) 377
BtsCI GGATG 2 cut(s) 226, 306
BtsI GCAGTG 1 cut(s) 172
BtsIMutI CAGTG 3 cut(s) 172, 441, 531
Cac8I GCNNGC 3 cut(s) 243, 379, 383
CfoI GCGC 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 419
CspCI CAANNNNNGTGG 2 cut(s) 76, 111
CviAII CATG 3 cut(s) 157, 242, 266
DdeI CTNAG 4 cut(s) 123, 387, 534, 660
DpnI GATC 1 cut(s) 413
DpnII GATC 1 cut(s) 411
Eam1104I CTCTTC 3 cut(s) 194, 331, 502
EarI CTCTTC 3 cut(s) 194, 331, 502
Eco130I CCWWGG 1 cut(s) 415
Eco147I AGGCCT 1 cut(s) 377
Eco24I GRGCYC 1 cut(s) 259
Eco47I GGWCC 1 cut(s) 419
Eco81I CCTNAGG 1 cut(s) 387
EcoNI CCTNNNNNAGG 1 cut(s) 371
EcoRII CCWGG 1 cut(s) 444
EcoT14I CCWWGG 1 cut(s) 415
EcoT38I GRGCYC 1 cut(s) 259
ErhI CCWWGG 1 cut(s) 415
FaeI CATG 3 cut(s) 160, 245, 269
FaiI YATR 5 cut(s) 158, 162, 243, 248, 267
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FatI CATG 3 cut(s) 156, 241, 265
Fnu4HI GCNGC 3 cut(s) 511, 526, 529
FokI GGATG 2 cut(s) 233, 293
FriOI GRGCYC 1 cut(s) 259
Fsp4HI GCNGC 3 cut(s) 511, 526, 529
FspBI CTAG 1 cut(s) 458
GlaI GCGC 1 cut(s) 119
GluI GCNGC 3 cut(s) 511, 526, 529
GsaI CCCAGC 1 cut(s) 482
HaeII RGCGCY 1 cut(s) 121
HaeIII GGCC 1 cut(s) 377
HhaI GCGC 1 cut(s) 120
Hin1II CATG 3 cut(s) 160, 245, 269
Hin6I GCGC 1 cut(s) 118
HinP1I GCGC 1 cut(s) 118
HindIII AAGCTT 1 cut(s) 130
HinfI GANTC 2 cut(s) 224, 323
HphI GGTGA 3 cut(s) 253, 293, 460
Hpy188I TCNGA 2 cut(s) 124, 486
HpyAV CCTTC 4 cut(s) 33, 140, 308, 634
HpyCH4III ACNGT 1 cut(s) 436
HpyCH4V TGCA 4 cut(s) 372, 381, 555, 566
HpyF10VI GCNNNNNNNGC 2 cut(s) 369, 378
HpyF3I CTNAG 4 cut(s) 123, 387, 534, 660
Hsp92II CATG 3 cut(s) 160, 245, 269
HspAI GCGC 1 cut(s) 118
Kzo9I GATC 1 cut(s) 411
LmnI GCTCC 2 cut(s) 368, 547
LpnPI CCDG 9 cut(s) 324, 391, 399, 413, 431, 458, 464, 634, 643
Lsp1109I GCAGC 2 cut(s) 497, 537
LweI GCATC 1 cut(s) 564
MaeI CTAG 1 cut(s) 458
MaeIII GTNAC 1 cut(s) 167
MalI GATC 1 cut(s) 413
MboI GATC 1 cut(s) 411
MboII GAAGA 6 cut(s) 211, 318, 321, 463, 489, 499
MfeI CAATTG 2 cut(s) 29, 579
MhlI GDGCHC 2 cut(s) 259, 434
MluCI AATT 2 cut(s) 29, 579
MlyI GAGTC 2 cut(s) 218, 317
MroXI GAANNNNTTC 1 cut(s) 644
MseI TTAA 2 cut(s) 23, 153
MspA1I CMGCKG 2 cut(s) 510, 528
MspR9I CCNGG 1 cut(s) 446
MunI CAATTG 2 cut(s) 29, 579
MvaI CCWGG 1 cut(s) 446
MwoI GCNNNNNNNGC 2 cut(s) 369, 378
NdeII GATC 1 cut(s) 411
NlaIII CATG 3 cut(s) 160, 245, 269
NlaIV GGNNCC 1 cut(s) 364
NmuCI GTSAC 1 cut(s) 167
NspI RCATGY 2 cut(s) 160, 245
PaeI GCATGC 1 cut(s) 245
PceI AGGCCT 1 cut(s) 377
PciI ACATGT 1 cut(s) 156
PdmI GAANNNNTTC 1 cut(s) 644
PkrI GCNGC 3 cut(s) 512, 527, 530
PleI GAGTC 2 cut(s) 218, 317
PpsI GAGTC 2 cut(s) 218, 317
PscI ACATGT 1 cut(s) 156
Psp6I CCWGG 1 cut(s) 444
PspFI CCCAGC 1 cut(s) 478
PspGI CCWGG 1 cut(s) 444
PspN4I GGNNCC 1 cut(s) 364
PspPI GGNCC 1 cut(s) 419
PvuII CAGCTG 1 cut(s) 510
SaqAI TTAA 2 cut(s) 23, 153
SatI GCNGC 3 cut(s) 511, 526, 529
Sau3AI GATC 1 cut(s) 411
Sau96I GGNCC 1 cut(s) 419
SchI GAGTC 2 cut(s) 218, 317
ScrFI CCNGG 1 cut(s) 446
SduI GDGCHC 2 cut(s) 259, 434
SetI ASST 9 cut(s) 71, 134, 348, 393, 450, 459, 465, 512, 621
SfaNI GCATC 1 cut(s) 564
SinI GGWCC 1 cut(s) 419
SphI GCATGC 1 cut(s) 245
Sse9I AATT 2 cut(s) 29, 579
SseBI AGGCCT 1 cut(s) 377
SsiI CCGC 1 cut(s) 528
SspMI CTAG 1 cut(s) 458
StuI AGGCCT 1 cut(s) 377
StyD4I CCNGG 1 cut(s) 444
StyI CCWWGG 1 cut(s) 415
TaaI ACNGT 1 cut(s) 436
TasI AATT 2 cut(s) 29, 579
TauI GCSGC 1 cut(s) 531
Tru1I TTAA 2 cut(s) 23, 153
Tru9I TTAA 2 cut(s) 23, 153
TscAI CASTG 3 cut(s) 172, 441, 538
TseFI GTSAC 1 cut(s) 167
TseI GCWGC 2 cut(s) 510, 525
Tsp45I GTSAC 1 cut(s) 167
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 3 cut(s) 172, 441, 538
VpaK11BI GGWCC 1 cut(s) 419
XagI CCTNNNNNAGG 1 cut(s) 371
XceI RCATGY 2 cut(s) 160, 245
XmnI GAANNNNTTC 1 cut(s) 644
XspI CTAG 1 cut(s) 458
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.