FvH4_2g26790

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0012132
Physical Location & Seq
Forward (+)
21450233 .. 21452367
2135 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g26790.t1

Sequence Viewer

Length: 690 bp
ATGCCAGCTGCAAGTTCATTTCTGAGGCAGATGAGTGTTAGGGAGGCTTGGAAATCAACTTCAAGGAGATGGGGAGGTGGGAACAGCAATAATCCTTGTGGTGGCAACAGTGGTGGTGCAACTCCACACTCTGAGGGAAGCTTCAAGAAGCAAATGGAAGGGTTTAGCAACATGTATGGTGGTGGTGGTTATGGTTATGGTGAGAATGCAACAGTGAGGAAGAGAGTGATGGTGGTGGTGGATGACACTTCTCATTCCAAACATGCAATGATGTGGGCTCTCACTCATATTGCCAACAAGGGTGATTTGCTCACTCTTCTTCACATCATGCCTTCTACTTCACATGGGGACTCTTCTGCTGGTTCTCCATACCTTGCAAACTCTCTTGGTTCTCTTTGCAAGGCTTGCAAGCCTGAGGTTGAAGTTGAAGCACTTGTAATCCAAGGACCTAGACTAGCCACAGTGATGAGCCAAGTGAAGAAGCTAGAGGTCTCAGTCCTAGTTCTGGGTCAGAAGAAGGCCTCTCCCCTCATTAGCTGCTTGTATGGAACAAGCAGAACTGAGGAGTTTGTGGAACATTGCATCAACAATGCAGATTGCTTGACTATTGGAGTGAGGAAGCAAAGCAAAGGTGTGGGTGGCTATCTCATCAACACTAGATGGCAGAAGGATTTCTGGCTCTTGGCTTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

230

Amino Acids

24.7

Weight (kDa)

9.25

Isoelectric Point (pI)

49.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 74 - 183 6.3e-09 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44760 AT1G44760
fragaria_vesca FvH4_2g26790
malus_domestica MD08G1165100.v1.1 MD15G1350900.v1.1
prunus_persica Prupe.1G499800_v2.0.a1
pyrus_communis pycom15g31340
rosa_chinensis RchiOBHm_Chr6g0295651
rosa_laevigata RLG00000011779
rosa_multiflora Rmu_sc0006802.1_g000009 Rmu_sc0015254.1_g000001
rosa_roxburghii Rroxscaffold_7G00172270
rosa_rugosa Rorug06G0253200 Rorug06G0253200
rosa_samantha Rh6AG366200 Rh6BG374400 Rh6CG380600 Rh6DG367500
rosa_wichuraiana Rw6G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AfiI CCNNNNNNNGG 2 cut(s) 101, 505
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 4 cut(s) 63, 145, 422, 428
AluBI AGCT 4 cut(s) 8, 141, 484, 537
AluI AGCT 4 cut(s) 8, 141, 484, 537
Alw26I GTCTC 1 cut(s) 496
AoxI GGCC 1 cut(s) 519
ApeKI GCWGC 2 cut(s) 8, 537
Asp700I GAANNNNTTC 1 cut(s) 671
AspS9I GGNCC 1 cut(s) 446
AsuHPI GGTGA 2 cut(s) 212, 314
AvaII GGWCC 1 cut(s) 446
AxyI CCTNAGG 1 cut(s) 414
BanII GRGCYC 1 cut(s) 280
BbvI GCAGC 1 cut(s) 524
BccI CCATC 3 cut(s) 63, 223, 654
BcoDI GTCTC 1 cut(s) 496
BfaI CTAG 5 cut(s) 450, 455, 485, 500, 657
BisI GCNGC 2 cut(s) 9, 538
BlsI GCNGC 2 cut(s) 10, 539
Bme18I GGWCC 1 cut(s) 446
BmgT120I GGNCC 1 cut(s) 446
BmsI GCATC 1 cut(s) 591
BsaI GGTCTC 1 cut(s) 496
BsaJI CCNNGG 1 cut(s) 442
Bsc4I CCNNNNNNNGG 2 cut(s) 101, 505
Bse21I CCTNAGG 1 cut(s) 414
Bse3DI GCAATG 2 cut(s) 273, 577
BseDI CCNNGG 1 cut(s) 442
BseGI GGATG 1 cut(s) 247
BseLI CCNNNNNNNGG 2 cut(s) 101, 505
BseMI GCAATG 2 cut(s) 273, 577
BseMII CTCAG 5 cut(s) 14, 123, 405, 507, 552
BseRI GAGGAG 1 cut(s) 578
BseXI GCAGC 1 cut(s) 524
BshFI GGCC 1 cut(s) 521
BslFI GGGAC 1 cut(s) 362
BslI CCNNNNNNNGG 2 cut(s) 101, 505
BsmAI GTCTC 1 cut(s) 496
BsmFI GGGAC 1 cut(s) 362
BsmI GAATGC 1 cut(s) 211
BsnI GGCC 1 cut(s) 521
Bso31I GGTCTC 1 cut(s) 496
Bsp1286I GDGCHC 1 cut(s) 280
BspANI GGCC 1 cut(s) 521
BspCNI CTCAG 5 cut(s) 15, 124, 406, 506, 553
BspTNI GGTCTC 1 cut(s) 496
BsrDI GCAATG 2 cut(s) 273, 577
BssECI CCNNGG 1 cut(s) 442
BssT1I CCWWGG 1 cut(s) 442
Bst4CI ACNGT 3 cut(s) 110, 214, 463
Bst6I CTCTTC 3 cut(s) 215, 321, 358
BstAPI GCANNNNNTGC 1 cut(s) 405
BstC8I GCNNGC 3 cut(s) 6, 406, 410
BstDEI CTNAG 6 cut(s) 23, 132, 414, 493, 561, 687
BstF5I GGATG 1 cut(s) 247
BstMAI GTCTC 1 cut(s) 496
BstMWI GCNNNNNNNGC 1 cut(s) 405
BstNSI RCATGY 2 cut(s) 175, 266
BstV1I GCAGC 1 cut(s) 524
Bsu36I CCTNAGG 1 cut(s) 414
BsuRI GGCC 1 cut(s) 521
BtsCI GGATG 1 cut(s) 247
BtsIMutI CAGTG 3 cut(s) 115, 219, 468
Cac8I GCNNGC 3 cut(s) 6, 406, 410
Cfr13I GGNCC 1 cut(s) 446
CspCI CAANNNNNGTGG 2 cut(s) 94, 129
CviAII CATG 4 cut(s) 172, 263, 328, 344
DdeI CTNAG 6 cut(s) 23, 132, 414, 493, 561, 687
Eam1104I CTCTTC 3 cut(s) 215, 321, 358
EarI CTCTTC 3 cut(s) 215, 321, 358
Eco130I CCWWGG 1 cut(s) 442
Eco147I AGGCCT 1 cut(s) 521
Eco24I GRGCYC 1 cut(s) 280
Eco31I GGTCTC 1 cut(s) 496
Eco47I GGWCC 1 cut(s) 446
Eco81I CCTNAGG 1 cut(s) 414
EcoO109I RGGNCCY 1 cut(s) 446
EcoT14I CCWWGG 1 cut(s) 442
EcoT38I GRGCYC 1 cut(s) 280
ErhI CCWWGG 1 cut(s) 442
FaeI CATG 4 cut(s) 175, 266, 331, 347
FaqI GGGAC 1 cut(s) 362
FatI CATG 4 cut(s) 171, 262, 327, 343
Fnu4HI GCNGC 2 cut(s) 9, 538
FokI GGATG 1 cut(s) 254
FriOI GRGCYC 1 cut(s) 280
Fsp4HI GCNGC 2 cut(s) 9, 538
FspBI CTAG 5 cut(s) 450, 455, 485, 500, 657
GluI GCNGC 2 cut(s) 9, 538
HaeIII GGCC 1 cut(s) 521
Hin1II CATG 4 cut(s) 175, 266, 331, 347
HindIII AAGCTT 1 cut(s) 139
HinfI GANTC 1 cut(s) 350
HphI GGTGA 2 cut(s) 212, 314
Hpy188I TCNGA 3 cut(s) 24, 133, 513
Hpy188III TCNNGA 1 cut(s) 145
HpyAV CCTTC 4 cut(s) 152, 342, 511, 661
HpyCH4III ACNGT 3 cut(s) 110, 214, 463
HpyCH4V TGCA 9 cut(s) 11, 119, 209, 266, 377, 399, 408, 582, 593
HpyF10VI GCNNNNNNNGC 1 cut(s) 405
HpyF3I CTNAG 6 cut(s) 23, 132, 414, 493, 561, 687
Hsp92II CATG 4 cut(s) 175, 266, 331, 347
LpnPI CCDG 5 cut(s) 18, 345, 426, 491, 661
Lsp1109I GCAGC 1 cut(s) 524
LweI GCATC 1 cut(s) 591
MaeI CTAG 5 cut(s) 450, 455, 485, 500, 657
MboII GAAGA 6 cut(s) 232, 308, 311, 345, 490, 526
MhlI GDGCHC 1 cut(s) 280
MlyI GAGTC 1 cut(s) 344
MroXI GAANNNNTTC 1 cut(s) 671
MslI CAYNNNNRTG 1 cut(s) 464
MspA1I CMGCKG 1 cut(s) 8
Mva1269I GAATGC 1 cut(s) 211
MwoI GCNNNNNNNGC 1 cut(s) 405
NlaIII CATG 4 cut(s) 175, 266, 331, 347
NspI RCATGY 2 cut(s) 175, 266
PceI AGGCCT 1 cut(s) 521
PciI ACATGT 1 cut(s) 171
PctI GAATGC 1 cut(s) 211
PdmI GAANNNNTTC 1 cut(s) 671
PkrI GCNGC 2 cut(s) 10, 539
PleI GAGTC 1 cut(s) 344
PpsI GAGTC 1 cut(s) 344
PpuMI RGGWCCY 1 cut(s) 446
PscI ACATGT 1 cut(s) 171
Psp5II RGGWCCY 1 cut(s) 446
PspPI GGNCC 1 cut(s) 446
PspPPI RGGWCCY 1 cut(s) 446
PvuII CAGCTG 1 cut(s) 8
RseI CAYNNNNRTG 1 cut(s) 464
SatI GCNGC 2 cut(s) 9, 538
Sau96I GGNCC 1 cut(s) 446
SchI GAGTC 1 cut(s) 344
SduI GDGCHC 1 cut(s) 280
SfaNI GCATC 1 cut(s) 591
SinI GGWCC 1 cut(s) 446
SmiMI CAYNNNNRTG 1 cut(s) 464
SseBI AGGCCT 1 cut(s) 521
SspMI CTAG 5 cut(s) 450, 455, 485, 500, 657
StuI AGGCCT 1 cut(s) 521
StyI CCWWGG 1 cut(s) 442
TaaI ACNGT 3 cut(s) 110, 214, 463
TscAI CASTG 3 cut(s) 115, 219, 468
TseI GCWGC 2 cut(s) 8, 537
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 3 cut(s) 115, 219, 468
VpaK11BI GGWCC 1 cut(s) 446
XceI RCATGY 2 cut(s) 175, 266
XmnI GAANNNNTTC 1 cut(s) 671
XspI CTAG 5 cut(s) 450, 455, 485, 500, 657
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.