Rroxscaffold_7G00172270

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0012132
Physical Location & Seq
Reverse (-)
12533713 .. 12535131
1419 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00172270.1

Sequence Viewer

Length: 465 bp
ATGCCAGCTTCAAGTTCATTTCTGGGGCAGATGAGTGTTAGGGAGGCTTGGAAATCAACTTCAAGGAGGTGGGGAGGTGGGAATAGCAATCCTTGTGGTGGCAACAGTGGTGGTGCAACTCCACACTCTGAGGGAAGCTTCAAGAAGCAAATGGAAGGGTTTAGCAACATGTATGGTAGCGGTGGTTATGGTTATGGTGAGAATGCAACAGTGAGGAAGAGAGTCATGGTGGTGGTGGATGACTCATCTCATTCCAAACATGCAATGATGTGGGCTCTCACTCATGTTGCCAACAAGGGTGATTTGCTTACTCTTCTTCACATCATGCCTTCTAGTTCACATAGGGACTCTTCTGCTGGTTCTCCATACCTTGCAAACTCTCTTGGGTCTCTTTGCAAGGCTTGCAAGCCTGAGGTTGAAGTGGAAGCACTTGTGATCCAAGGACCTAGACTAGCCACACAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

154

Amino Acids

16.34

Weight (kDa)

9.1

Isoelectric Point (pI)

49.98

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 73 - 124 5.9e-07 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44760 AT1G44760
fragaria_vesca FvH4_2g26790
malus_domestica MD08G1165100.v1.1 MD15G1350900.v1.1
prunus_persica Prupe.1G499800_v2.0.a1
pyrus_communis pycom15g31340
rosa_chinensis RchiOBHm_Chr6g0295651
rosa_laevigata RLG00000011779
rosa_multiflora Rmu_sc0006802.1_g000009 Rmu_sc0015254.1_g000001
rosa_roxburghii Rroxscaffold_7G00172270
rosa_rugosa Rorug06G0253200 Rorug06G0253200
rosa_samantha Rh6AG366200 Rh6BG374400 Rh6CG380600 Rh6DG367500
rosa_wichuraiana Rw6G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 430
AdeI CACNNNGTG 1 cut(s) 462
AfiI CCNNNNNNNGG 1 cut(s) 98
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 4 cut(s) 12, 63, 142, 419
AluBI AGCT 2 cut(s) 8, 138
AluI AGCT 2 cut(s) 8, 138
Alw26I GTCTC 1 cut(s) 393
AlwI GGATC 1 cut(s) 430
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 209, 311
AvaII GGWCC 1 cut(s) 443
AxyI CCTNAGG 1 cut(s) 411
BanII GRGCYC 1 cut(s) 277
BcoDI GTCTC 1 cut(s) 393
BfaI CTAG 3 cut(s) 333, 447, 452
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BsaI GGTCTC 1 cut(s) 393
BsaJI CCNNGG 1 cut(s) 439
Bsc4I CCNNNNNNNGG 1 cut(s) 98
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 1 cut(s) 270
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 1 cut(s) 98
BseMI GCAATG 1 cut(s) 270
BseMII CTCAG 2 cut(s) 120, 402
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 1 cut(s) 98
BsmAI GTCTC 1 cut(s) 393
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 208
Bso31I GGTCTC 1 cut(s) 393
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 1 cut(s) 180
BspCNI CTCAG 2 cut(s) 121, 403
BspPI GGATC 1 cut(s) 430
BspTNI GGTCTC 1 cut(s) 393
BsrDI GCAATG 1 cut(s) 270
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 439
Bst4CI ACNGT 3 cut(s) 107, 211, 462
Bst6I CTCTTC 3 cut(s) 212, 318, 355
BstAPI GCANNNNNTGC 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 6, 403, 407
BstDEI CTNAG 2 cut(s) 129, 411
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 1 cut(s) 393
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 172, 263
Bsu36I CCTNAGG 1 cut(s) 411
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 112, 216
Cac8I GCNNGC 3 cut(s) 6, 403, 407
Cfr13I GGNCC 1 cut(s) 443
CspCI CAANNNNNGTGG 4 cut(s) 76, 91, 111, 126
CviAII CATG 5 cut(s) 169, 226, 260, 284, 325
CviJI RGCY 7 cut(s) 8, 47, 138, 275, 401, 409, 455
CviKI_1 RGCY 7 cut(s) 8, 47, 138, 275, 401, 409, 455
DdeI CTNAG 2 cut(s) 129, 411
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
DraIII CACNNNGTG 1 cut(s) 462
Eam1104I CTCTTC 3 cut(s) 212, 318, 355
EarI CTCTTC 3 cut(s) 212, 318, 355
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 1 cut(s) 393
Eco47I GGWCC 1 cut(s) 443
Eco81I CCTNAGG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 5 cut(s) 172, 229, 263, 287, 328
FaqI GGGAC 1 cut(s) 359
FatI CATG 5 cut(s) 168, 225, 259, 283, 324
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 277
FspBI CTAG 3 cut(s) 333, 447, 452
Hin1II CATG 5 cut(s) 172, 229, 263, 287, 328
HindIII AAGCTT 1 cut(s) 136
HinfI GANTC 3 cut(s) 222, 242, 347
HphI GGTGA 2 cut(s) 209, 311
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 1 cut(s) 130
Hpy188III TCNNGA 1 cut(s) 142
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 2 cut(s) 149, 339
HpyCH4III ACNGT 3 cut(s) 107, 211, 462
HpyCH4V TGCA 6 cut(s) 116, 206, 263, 374, 396, 405
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 2 cut(s) 129, 411
Hsp92II CATG 5 cut(s) 172, 229, 263, 287, 328
Kzo9I GATC 1 cut(s) 435
LpnPI CCDG 4 cut(s) 8, 18, 342, 423
MaeI CTAG 3 cut(s) 333, 447, 452
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 4 cut(s) 229, 305, 308, 342
MhlI GDGCHC 1 cut(s) 277
MlyI GAGTC 3 cut(s) 231, 236, 341
MnlI CCTC 6 cut(s) 37, 60, 68, 124, 207, 406
MslI CAYNNNNRTG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 1 cut(s) 435
NlaIII CATG 5 cut(s) 172, 229, 263, 287, 328
NspI RCATGY 2 cut(s) 172, 263
PciI ACATGT 1 cut(s) 168
PctI GAATGC 1 cut(s) 208
PleI GAGTC 3 cut(s) 230, 236, 341
PpsI GAGTC 3 cut(s) 230, 236, 341
PpuMI RGGWCCY 1 cut(s) 443
PscI ACATGT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 443
PspPI GGNCC 1 cut(s) 443
PspPPI RGGWCCY 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 230
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 3 cut(s) 231, 236, 341
SduI GDGCHC 1 cut(s) 277
SetI ASST 7 cut(s) 10, 71, 79, 140, 372, 417, 448
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 230
SsiI CCGC 1 cut(s) 180
SspMI CTAG 3 cut(s) 333, 447, 452
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 3 cut(s) 107, 211, 462
TscAI CASTG 2 cut(s) 112, 216
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 2 cut(s) 112, 216
VpaK11BI GGWCC 1 cut(s) 443
XceI RCATGY 2 cut(s) 172, 263
XspI CTAG 3 cut(s) 333, 447, 452
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.