Rh6CG380600

Universal stress protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0012132
Physical Location & Seq
Forward (+)
56688263 .. 56689763
1501 bp
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UTR
Exon/CDS
Intron
Rh6CG380600.1

Sequence Viewer

Length: 687 bp
ATGCCAGCTTCAAGTTCATTTCTGGGGCAGATGAGTGTTAGGGAGGCTTGGAAATCAACTTCAAGAAGGTGGGGAGGTGGGAATAGCAACCCTTGTGGTGGCAACAGCGGTGGTGCAACTCCACACTCTGAGGGAAGCTTCAAGAAGCAAATGGAAGGGTTTAGCAACATGTATGGTAGCGGTGGTTATGGTTATGGTGAGAATGCAACAGTGAGGAAGAGAGTCATGGTGGTGGTGGATGACTCATCTCATTCCAAACATGCAATGATGTGGGCTCTCACTCATGTTGCCAACAAGGGTGATTTGCTTACTCTTCTTCACATCATGCCTTCTAGTTCACATAGGGACTCTTCTGCTGGTTCTCCATACCTTGCAAACTCTCTTGGGTCTCTTTGCAAGGCTTGCAAGCCTGAGGTTGAAGTGGAAGCACTTGTGATCCAAGGACCTAGACTAGCCACAGTGATAAGCCAAGTGAAGAAGCTAGAGGTCTCAGTCCTAGTTCTGGGTCAGAAGAAAGCTTCTTCCCTCATTAGCTGCTTATATGGAACAAGCAGAACTGAGGAGTTTGTGGAACATTGCATCAACAATGCAGATTGCTTGACTATTGGAGTGAGGAAGCAAAGCAAAGGTGTGGGCGGCTATCTCATCAACACTAGATGGCAGAAAGATTTCTGGCTCCTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

228

Amino Acids

24.56

Weight (kDa)

9.25

Isoelectric Point (pI)

47.72

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 73 - 182 6.2e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44760 AT1G44760
fragaria_vesca FvH4_2g26790
malus_domestica MD08G1165100.v1.1 MD15G1350900.v1.1
prunus_persica Prupe.1G499800_v2.0.a1
pyrus_communis pycom15g31340
rosa_chinensis RchiOBHm_Chr6g0295651
rosa_laevigata RLG00000011779
rosa_multiflora Rmu_sc0006802.1_g000009 Rmu_sc0015254.1_g000001
rosa_roxburghii Rroxscaffold_7G00172270
rosa_rugosa Rorug06G0253200 Rorug06G0253200
rosa_samantha Rh6AG366200 Rh6BG374400 Rh6CG380600 Rh6DG367500
rosa_wichuraiana Rw6G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 108, 180, 636
AclWI GGATC 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 98, 502
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 4 cut(s) 12, 63, 142, 419
AjnI CCWGG 1 cut(s) 678
AluBI AGCT 5 cut(s) 8, 138, 481, 518, 534
AluI AGCT 5 cut(s) 8, 138, 481, 518, 534
Alw26I GTCTC 2 cut(s) 393, 493
AlwI GGATC 1 cut(s) 430
AoxI GGCC 1 cut(s) 681
ApeKI GCWGC 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 2 cut(s) 209, 311
AvaII GGWCC 1 cut(s) 443
AxyI CCTNAGG 1 cut(s) 411
BanII GRGCYC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 521
BccI CCATC 1 cut(s) 651
BciT130I CCWGG 1 cut(s) 680
BcoDI GTCTC 2 cut(s) 393, 493
BfaI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
BisI GCNGC 2 cut(s) 535, 637
BlsI GCNGC 2 cut(s) 536, 638
Bme1390I CCNGG 1 cut(s) 680
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmiI GGNNCC 1 cut(s) 677
BmrFI CCNGG 1 cut(s) 680
BmsI GCATC 1 cut(s) 588
BsaI GGTCTC 2 cut(s) 393, 493
BsaJI CCNNGG 1 cut(s) 439
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 502
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 2 cut(s) 270, 574
BseBI CCWGG 1 cut(s) 680
BseDI CCNNGG 1 cut(s) 439
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 98, 502
BseMI GCAATG 2 cut(s) 270, 574
BseMII CTCAG 4 cut(s) 120, 402, 504, 549
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 1 cut(s) 521
BshFI GGCC 1 cut(s) 683
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 98, 502
BsmAI GTCTC 2 cut(s) 393, 493
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 683
Bso31I GGTCTC 2 cut(s) 393, 493
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 3 cut(s) 108, 180, 636
BspANI GGCC 1 cut(s) 683
BspCNI CTCAG 4 cut(s) 121, 403, 503, 550
BspLI GGNNCC 1 cut(s) 677
BspPI GGATC 1 cut(s) 430
BspTNI GGTCTC 2 cut(s) 393, 493
BsrDI GCAATG 2 cut(s) 270, 574
BssECI CCNNGG 1 cut(s) 439
BssMI GATC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 439
Bst2UI CCWGG 1 cut(s) 680
Bst4CI ACNGT 2 cut(s) 211, 460
Bst6I CTCTTC 3 cut(s) 212, 318, 355
BstAPI GCANNNNNTGC 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 6, 403, 407
BstDEI CTNAG 4 cut(s) 129, 411, 490, 558
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 2 cut(s) 393, 493
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNI CCWGG 1 cut(s) 680
BstNSI RCATGY 2 cut(s) 172, 263
BstSCI CCNGG 1 cut(s) 678
BstV1I GCAGC 1 cut(s) 521
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 683
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 216, 465
Cac8I GCNNGC 3 cut(s) 6, 403, 407
Cfr13I GGNCC 1 cut(s) 443
CspCI CAANNNNNGTGG 4 cut(s) 76, 91, 111, 126
CviAII CATG 5 cut(s) 169, 226, 260, 284, 325
DdeI CTNAG 4 cut(s) 129, 411, 490, 558
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 212, 318, 355
EarI CTCTTC 3 cut(s) 212, 318, 355
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 2 cut(s) 393, 493
Eco47I GGWCC 1 cut(s) 443
Eco81I CCTNAGG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 678
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 5 cut(s) 172, 229, 263, 287, 328
FaqI GGGAC 1 cut(s) 359
FatI CATG 5 cut(s) 168, 225, 259, 283, 324
Fnu4HI GCNGC 2 cut(s) 535, 637
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 2 cut(s) 535, 637
FspBI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
GluI GCNGC 2 cut(s) 535, 637
HaeIII GGCC 1 cut(s) 683
Hin1II CATG 5 cut(s) 172, 229, 263, 287, 328
HindIII AAGCTT 2 cut(s) 136, 516
HinfI GANTC 3 cut(s) 222, 242, 347
HphI GGTGA 2 cut(s) 209, 311
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 130, 510
Hpy188III TCNNGA 2 cut(s) 63, 142
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 3 cut(s) 60, 149, 339
HpyCH4III ACNGT 2 cut(s) 211, 460
HpyCH4V TGCA 8 cut(s) 116, 206, 263, 374, 396, 405, 579, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 4 cut(s) 129, 411, 490, 558
Hsp92II CATG 5 cut(s) 172, 229, 263, 287, 328
Kzo9I GATC 1 cut(s) 435
LmnI GCTCC 1 cut(s) 681
LpnPI CCDG 7 cut(s) 8, 18, 342, 423, 488, 658, 665
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 1 cut(s) 588
MaeI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 7 cut(s) 229, 305, 308, 342, 487, 513, 523
MhlI GDGCHC 1 cut(s) 277
MlyI GAGTC 3 cut(s) 231, 236, 341
MnlI CCTC 9 cut(s) 37, 68, 124, 207, 406, 478, 536, 553, 606
MroXI GAANNNNTTC 1 cut(s) 668
MslI CAYNNNNRTG 1 cut(s) 230
MspA1I CMGCKG 1 cut(s) 108
MspR9I CCNGG 1 cut(s) 680
Mva1269I GAATGC 1 cut(s) 208
MvaI CCWGG 1 cut(s) 680
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 1 cut(s) 435
NlaIII CATG 5 cut(s) 172, 229, 263, 287, 328
NlaIV GGNNCC 1 cut(s) 677
NspI RCATGY 2 cut(s) 172, 263
PciI ACATGT 1 cut(s) 168
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 668
PkrI GCNGC 2 cut(s) 536, 638
PleI GAGTC 3 cut(s) 230, 236, 341
PpsI GAGTC 3 cut(s) 230, 236, 341
PpuMI RGGWCCY 1 cut(s) 443
PscI ACATGT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 443
Psp6I CCWGG 1 cut(s) 678
PspGI CCWGG 1 cut(s) 678
PspN4I GGNNCC 1 cut(s) 677
PspPI GGNCC 1 cut(s) 443
PspPPI RGGWCCY 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 230
SatI GCNGC 2 cut(s) 535, 637
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 3 cut(s) 231, 236, 341
ScrFI CCNGG 1 cut(s) 680
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 1 cut(s) 588
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 230
SsiI CCGC 3 cut(s) 108, 180, 636
SspMI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
StyD4I CCNGG 1 cut(s) 678
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 2 cut(s) 211, 460
TauI GCSGC 1 cut(s) 639
TscAI CASTG 2 cut(s) 216, 465
TseI GCWGC 1 cut(s) 534
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 2 cut(s) 216, 465
VpaK11BI GGWCC 1 cut(s) 443
XceI RCATGY 2 cut(s) 172, 263
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.