MD08G1165100.v1.1

Universal stress protein family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0012132
Physical Location & Seq
Reverse (-)
19381260 .. 19383176
1917 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1165100.v1.1.491

Sequence Viewer

Length: 696 bp
ATGCCAAAACCAAGCGCATGTTTGAGGGAGTTAAGTGGAAGGGAGGCTTGGAAATCAAAATCAAGGAGGTGGGGTGGGGGTGGGGGTGGGGGTGGTGGTGGAAATAACAAGTCTTTCAGTGGCGGAGTTGGGCGGTCTGAGGGAAAAGGAGGAAGCTTTCAGCATATGGAAGGGCTTCAAAGCATGTATGGCAACAACAATGGTGGTGGCGGTGGTGGATTTGAAACGAGGAAGAGAGTGATGGTGGTGGTGGATGACTCATCACATTCCAAGCATGCCATGATGTGGGCCCTCACTCATGTTGCCAACACGGGTGATTTGCTTACTCTCCTCCACATCATCCCTTCTTGCCATGACTTTTCCTCCTCACCATGCCTTGCCAACTCCCTTAGCTCCCTCTGCAAGGCTTGCAAGCCTGAGGTGGAAGTGGAAGCTCTTGTGATCCAAGGTCCAAGACTGGCCACAGTTATAAGCCAGGTCAAGAAGCTTGAGGTTTCAGTGCTAGTGCTTGGTCAGAAGAAGCCATCTCCCCTCATCAGCTGCATATTTGGAAGCAGCAGCAGCAAAGAGTTGTTCGTGGAGCATTGCATAAACAATGCAGAGTGTTTGACAATTGGAGTGAGGAAGCAGAGCAAAGGAGTGAGTGGTTACCTTATCAACACCAGATGGCAGAAGGATTTCTGGCTCTTGGCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

232

Amino Acids

24.59

Weight (kDa)

9.35

Isoelectric Point (pI)

61.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 77 - 189 1e-09 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012132)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44760 AT1G44760
fragaria_vesca FvH4_2g26790
malus_domestica MD08G1165100.v1.1 MD15G1350900.v1.1
prunus_persica Prupe.1G499800_v2.0.a1
pyrus_communis pycom15g31340
rosa_chinensis RchiOBHm_Chr6g0295651
rosa_laevigata RLG00000011779
rosa_multiflora Rmu_sc0006802.1_g000009 Rmu_sc0015254.1_g000001
rosa_roxburghii Rroxscaffold_7G00172270
rosa_rugosa Rorug06G0253200 Rorug06G0253200
rosa_samantha Rh6AG366200 Rh6BG374400 Rh6CG380600 Rh6DG367500
rosa_wichuraiana Rw6G031960

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 470
AccB7I CCANNNNNTGG 1 cut(s) 285
AciI CCGC 3 cut(s) 123, 133, 210
AclWI GGATC 1 cut(s) 436
AcoI YGGCCR 1 cut(s) 459
AfiI CCNNNNNNNGG 2 cut(s) 285, 403
AgsI TTSAA 2 cut(s) 179, 224
AjnI CCWGG 1 cut(s) 474
AjuI GAANNNNNNNTTGG 2 cut(s) 31, 63
AluBI AGCT 5 cut(s) 156, 393, 434, 487, 540
AluI AGCT 5 cut(s) 156, 393, 434, 487, 540
AlwI GGATC 1 cut(s) 436
AoxI GGCC 2 cut(s) 288, 459
ApaI GGGCCC 1 cut(s) 292
ApeKI GCWGC 4 cut(s) 540, 555, 558, 561
Asp700I GAANNNNTTC 2 cut(s) 174, 677
AspLEI GCGC 1 cut(s) 17
AspS9I GGNCC 3 cut(s) 288, 289, 449
AsuHPI GGTGA 2 cut(s) 326, 360
AvaII GGWCC 1 cut(s) 449
AxyI CCTNAGG 1 cut(s) 417
BaeGI GKGCMC 1 cut(s) 292
BalI TGGCCA 1 cut(s) 461
BanII GRGCYC 1 cut(s) 292
BbvI GCAGC 4 cut(s) 527, 567, 570, 573
BccI CCATC 3 cut(s) 235, 532, 660
BciT130I CCWGG 1 cut(s) 476
BfaI CTAG 1 cut(s) 503
BisI GCNGC 4 cut(s) 541, 556, 559, 562
BlsI GCNGC 4 cut(s) 542, 557, 560, 563
Bme1390I CCNGG 1 cut(s) 476
Bme18I GGWCC 1 cut(s) 449
BmgT120I GGNCC 3 cut(s) 288, 289, 449
BmiI GGNNCC 1 cut(s) 290
BmrFI CCNGG 1 cut(s) 476
Bpu10I CCTNAGC 1 cut(s) 389
BpuEI CTTGAG 1 cut(s) 509
BsaJI CCNNGG 1 cut(s) 445
BsaXI ACNNNNNCTCC 4 cut(s) 58, 88, 347, 377
Bsc4I CCNNNNNNNGG 2 cut(s) 285, 403
Bse1I ACTGG 1 cut(s) 462
Bse21I CCTNAGG 1 cut(s) 417
Bse3DI GCAATG 1 cut(s) 583
BseBI CCWGG 1 cut(s) 476
BseDI CCNNGG 1 cut(s) 445
BseGI GGATG 2 cut(s) 259, 339
BseLI CCNNNNNNNGG 2 cut(s) 285, 403
BseMI GCAATG 1 cut(s) 583
BseMII CTCAG 2 cut(s) 129, 408
BseNI ACTGG 1 cut(s) 462
BseRI GAGGAG 2 cut(s) 320, 355
BseSI GKGCMC 1 cut(s) 292
BseXI GCAGC 4 cut(s) 527, 567, 570, 573
BshFI GGCC 2 cut(s) 290, 461
BslI CCNNNNNNNGG 2 cut(s) 285, 403
BsnI GGCC 2 cut(s) 290, 461
Bsp120I GGGCCC 1 cut(s) 288
Bsp1286I GDGCHC 1 cut(s) 292
Bsp143I GATC 1 cut(s) 441
BspACI CCGC 3 cut(s) 123, 133, 210
BspANI GGCC 2 cut(s) 290, 461
BspCNI CTCAG 2 cut(s) 130, 409
BspLI GGNNCC 1 cut(s) 290
BspPI GGATC 1 cut(s) 436
BsrDI GCAATG 1 cut(s) 583
BsrI ACTGG 1 cut(s) 462
BssECI CCNNGG 1 cut(s) 445
BssMI GATC 1 cut(s) 441
BssT1I CCWWGG 1 cut(s) 445
Bst2UI CCWGG 1 cut(s) 476
Bst4CI ACNGT 1 cut(s) 466
Bst6I CTCTTC 1 cut(s) 227
BstAPI GCANNNNNTGC 1 cut(s) 408
BstC8I GCNNGC 3 cut(s) 276, 409, 413
BstDEI CTNAG 3 cut(s) 138, 389, 417
BstEII GGTNACC 1 cut(s) 647
BstENI CCTNNNNNAGG 1 cut(s) 401
BstF5I GGATG 2 cut(s) 259, 339
BstHHI GCGC 1 cut(s) 17
BstKTI GATC 1 cut(s) 444
BstMBI GATC 1 cut(s) 441
BstMWI GCNNNNNNNGC 4 cut(s) 189, 399, 408, 561
BstNI CCWGG 1 cut(s) 476
BstNSI RCATGY 3 cut(s) 21, 187, 278
BstPI GGTNACC 1 cut(s) 647
BstSCI CCNGG 1 cut(s) 474
BstSLI GKGCMC 1 cut(s) 292
BstV1I GCAGC 4 cut(s) 527, 567, 570, 573
Bsu36I CCTNAGG 1 cut(s) 417
BsuRI GGCC 2 cut(s) 290, 461
BtsCI GGATG 2 cut(s) 259, 339
BtsIMutI CAGTG 2 cut(s) 124, 504
Cac8I GCNNGC 3 cut(s) 276, 409, 413
CfoI GCGC 1 cut(s) 17
Cfr13I GGNCC 3 cut(s) 288, 289, 449
CspCI CAANNNNNGTGG 4 cut(s) 184, 187, 219, 222
CviAII CATG 7 cut(s) 18, 184, 275, 280, 299, 353, 372
DdeI CTNAG 3 cut(s) 138, 389, 417
DpnI GATC 1 cut(s) 443
DpnII GATC 1 cut(s) 441
EaeI YGGCCR 1 cut(s) 459
Eam1104I CTCTTC 1 cut(s) 227
EarI CTCTTC 1 cut(s) 227
EciI GGCGGA 1 cut(s) 138
Eco130I CCWWGG 1 cut(s) 445
Eco24I GRGCYC 1 cut(s) 292
Eco47I GGWCC 1 cut(s) 449
Eco81I CCTNAGG 1 cut(s) 417
Eco91I GGTNACC 1 cut(s) 647
EcoNI CCTNNNNNAGG 1 cut(s) 401
EcoO109I RGGNCCY 1 cut(s) 289
EcoO65I GGTNACC 1 cut(s) 647
EcoRII CCWGG 1 cut(s) 474
EcoT14I CCWWGG 1 cut(s) 445
EcoT38I GRGCYC 1 cut(s) 292
ErhI CCWWGG 1 cut(s) 445
FaeI CATG 7 cut(s) 21, 187, 278, 283, 302, 356, 375
FalI AAGNNNNNCTT 2 cut(s) 31, 63
FatI CATG 7 cut(s) 17, 183, 274, 279, 298, 352, 371
FauNDI CATATG 1 cut(s) 165
Fnu4HI GCNGC 4 cut(s) 541, 556, 559, 562
FokI GGATG 2 cut(s) 266, 326
FriOI GRGCYC 1 cut(s) 292
Fsp4HI GCNGC 4 cut(s) 541, 556, 559, 562
FspBI CTAG 1 cut(s) 503
GlaI GCGC 1 cut(s) 16
GluI GCNGC 4 cut(s) 541, 556, 559, 562
HaeIII GGCC 2 cut(s) 290, 461
HhaI GCGC 1 cut(s) 17
Hin1II CATG 7 cut(s) 21, 187, 278, 283, 302, 356, 375
Hin6I GCGC 1 cut(s) 15
HinP1I GCGC 1 cut(s) 15
HindIII AAGCTT 2 cut(s) 154, 485
HinfI GANTC 1 cut(s) 257
HphI GGTGA 2 cut(s) 326, 360
Hpy188I TCNGA 2 cut(s) 139, 516
Hpy188III TCNNGA 1 cut(s) 481
HpyAV CCTTC 4 cut(s) 33, 164, 354, 667
HpyCH4III ACNGT 1 cut(s) 466
HpyCH4V TGCA 5 cut(s) 402, 411, 543, 588, 599
HpyF10VI GCNNNNNNNGC 4 cut(s) 189, 399, 408, 561
HpyF3I CTNAG 3 cut(s) 138, 389, 417
Hsp92II CATG 7 cut(s) 21, 187, 278, 283, 302, 356, 375
HspAI GCGC 1 cut(s) 15
Kzo9I GATC 1 cut(s) 441
LmnI GCTCC 2 cut(s) 398, 580
LpnPI CCDG 6 cut(s) 429, 443, 461, 488, 667, 676
Lsp1109I GCAGC 4 cut(s) 527, 567, 570, 573
MaeI CTAG 1 cut(s) 503
MaeIII GTNAC 1 cut(s) 647
MalI GATC 1 cut(s) 443
MboI GATC 1 cut(s) 441
MboII GAAGA 2 cut(s) 244, 529
MfeI CAATTG 1 cut(s) 612
MhlI GDGCHC 1 cut(s) 292
MlsI TGGCCA 1 cut(s) 461
MluCI AATT 1 cut(s) 612
MluNI TGGCCA 1 cut(s) 461
MlyI GAGTC 1 cut(s) 251
Mox20I TGGCCA 1 cut(s) 461
MroXI GAANNNNTTC 2 cut(s) 174, 677
MscI TGGCCA 1 cut(s) 461
MseI TTAA 2 cut(s) 32, 694
Msp20I TGGCCA 1 cut(s) 461
MspA1I CMGCKG 1 cut(s) 540
MspR9I CCNGG 1 cut(s) 476
MunI CAATTG 1 cut(s) 612
MvaI CCWGG 1 cut(s) 476
MwoI GCNNNNNNNGC 4 cut(s) 189, 399, 408, 561
NdeI CATATG 1 cut(s) 165
NdeII GATC 1 cut(s) 441
NlaIII CATG 7 cut(s) 21, 187, 278, 283, 302, 356, 375
NlaIV GGNNCC 1 cut(s) 290
NspI RCATGY 3 cut(s) 21, 187, 278
PaeI GCATGC 1 cut(s) 278
PdmI GAANNNNTTC 2 cut(s) 174, 677
PflMI CCANNNNNTGG 1 cut(s) 285
PkrI GCNGC 4 cut(s) 542, 557, 560, 563
PleI GAGTC 1 cut(s) 251
PpsI GAGTC 1 cut(s) 251
PsiI TTATAA 1 cut(s) 470
Psp6I CCWGG 1 cut(s) 474
PspEI GGTNACC 1 cut(s) 647
PspGI CCWGG 1 cut(s) 474
PspN4I GGNNCC 1 cut(s) 290
PspOMI GGGCCC 1 cut(s) 288
PspPI GGNCC 3 cut(s) 288, 289, 449
PvuII CAGCTG 1 cut(s) 540
SaqAI TTAA 2 cut(s) 32, 694
SatI GCNGC 4 cut(s) 541, 556, 559, 562
Sau3AI GATC 1 cut(s) 441
Sau96I GGNCC 3 cut(s) 288, 289, 449
SchI GAGTC 1 cut(s) 251
ScrFI CCNGG 1 cut(s) 476
SduI GDGCHC 1 cut(s) 292
SinI GGWCC 1 cut(s) 449
SmlI CTYRAG 1 cut(s) 488
SmoI CTYRAG 1 cut(s) 488
SphI GCATGC 1 cut(s) 278
Sse9I AATT 1 cut(s) 612
SsiI CCGC 3 cut(s) 123, 133, 210
SspMI CTAG 1 cut(s) 503
StyD4I CCNGG 1 cut(s) 474
StyI CCWWGG 1 cut(s) 445
TaaI ACNGT 1 cut(s) 466
TasI AATT 1 cut(s) 612
Tru1I TTAA 2 cut(s) 32, 694
Tru9I TTAA 2 cut(s) 32, 694
TscAI CASTG 2 cut(s) 124, 504
TseI GCWGC 4 cut(s) 540, 555, 558, 561
TspRI CASTG 2 cut(s) 124, 504
Van91I CCANNNNNTGG 1 cut(s) 285
VpaK11BI GGWCC 1 cut(s) 449
XagI CCTNNNNNAGG 1 cut(s) 401
XceI RCATGY 3 cut(s) 21, 187, 278
XmnI GAANNNNTTC 2 cut(s) 174, 677
XspI CTAG 1 cut(s) 503
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.