AT1G44970

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0015236
Physical Location & Seq
Forward (+)
17002089 .. 17003867
1779 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G44970.1

Sequence Viewer

Length: 1041 bp
ATGGCTATCTCAAAGCTTATTCCTACTCTTGTGCTCTTTGTTTTGTTCTCTTTTGATGTTAGTGTTGCTCATCCAGGTCTAGGATTTGGATGGGGAAGTAATAGTCCCATTGGAGGATCTTTTTACTCAAATCTTTACCCACAATTTTACCAGTTCTCTTGTCCACAAGCTGATGAGATTGTTATGACGGTGCTCGAAAAAGCCATAGCTAAAGAACCAAGAATGGCAGCATCTTTACTCAGACTTCACTTCCACGACTGCTTCGTTCAGGGCTGTGATGCATCAATCTTGTTGGATGATAGTGCAACCATAAGAAGTGAAAAGAATGCTGGACCAAACAAGAACTCCGTTAGAGGGTTTCAAGTAATCGACGAGATCAAAGCCAAACTTGAGCAAGCTTGTCCTCAAACTGTCTCCTGCGCCGACATTCTAGCTCTAGCTGCTCGTGGCTCAACTATACTGAGTGGTGGACCATCATGGGAGCTTCCACTAGGGAGGAGAGACTCGAGGACCGCTAGCCTTAATGGCGCAAACACGAACATTCCTGCACCTAACTCAACTATTCAAAATCTCTTAACCATGTTCCAACGTAAAGGTTTGAACGAAGAAGACCTTGTTTCCCTATCAGGAGGACATACGATTGGAGTAGCGAGGTGCACAACGTTTAAACAAAGACTATACAATCAAAACGGTAATAACCAACCAGACGAGACGCTAGAGAGGTCTTACTACTATGGTCTCAGGTCAATTTGTCCACCAACAGGCGGTGACAACAATATTTCACCTCTAGACTTAGCCTCTCCTGCAAGATTCGACAACACATACTTCAAGCTCCTTCTATGGGGCAAAGGCTTATTGACATCAGATGAAGTGCTTCTCACTGGCAATGTAGGCAAGACTGGTGCATTAGTGAAAGCTTATGCCGAAGACGAGAGACTTTTCTTCCAACAATTCGCAAAGTCGATGGTTAACATGGGAAACATTCAGCCTCTTACTGGTTTTAATGGTGAGATCAGGAAGAGTTGTCATGTGATTAACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

346

Amino Acids

37.74

Weight (kDa)

6.94

Isoelectric Point (pI)

44.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 63 - 310 1.2e-83 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 513, 765
AclI AACGTT 1 cut(s) 662
AclWI GGATC 1 cut(s) 124
AfiI CCNNNNNNNGG 7 cut(s) 80, 113, 354, 761, 764, 841, 995
AgsI TTSAA 4 cut(s) 362, 566, 601, 829
AjnI CCWGG 1 cut(s) 73
AluBI AGCT 9 cut(s) 16, 170, 209, 398, 434, 440, 484, 832, 917
AluI AGCT 9 cut(s) 16, 170, 209, 398, 434, 440, 484, 832, 917
Alw21I GWGCWC 3 cut(s) 36, 195, 659
Alw26I GTCTC 5 cut(s) 418, 495, 704, 743, 928
Alw44I GTGCAC 1 cut(s) 655
AlwI GGATC 1 cut(s) 124
Ama87I CYCGRG 1 cut(s) 505
ApaLI GTGCAC 1 cut(s) 655
ApeKI GCWGC 2 cut(s) 227, 440
Asp700I GAANNNNTTC 1 cut(s) 873
AspLEI GCGC 2 cut(s) 422, 530
AspS9I GGNCC 3 cut(s) 332, 470, 510
AsuHPI GGTGA 3 cut(s) 774, 779, 1019
AsuNHI GCTAGC 1 cut(s) 515
AvaI CYCGRG 1 cut(s) 505
AvaII GGWCC 3 cut(s) 332, 470, 510
BaeGI GKGCMC 1 cut(s) 659
BauI CACGAG 1 cut(s) 444
BbsI GAAGAC 2 cut(s) 615, 933
Bbv12I GWGCWC 3 cut(s) 36, 195, 659
BbvI GCAGC 2 cut(s) 239, 427
BccI CCATC 3 cut(s) 84, 481, 958
BciT130I CCWGG 1 cut(s) 75
BcoDI GTCTC 5 cut(s) 418, 495, 704, 743, 928
BfaI CTAG 7 cut(s) 80, 431, 437, 491, 516, 716, 788
BglI GCCNNNNNGGC 1 cut(s) 525
BisI GCNGC 2 cut(s) 228, 441
BlsI GCNGC 2 cut(s) 229, 442
Bme1390I CCNGG 1 cut(s) 75
Bme18I GGWCC 3 cut(s) 332, 470, 510
BmeT110I CYCGRG 1 cut(s) 505
BmgT120I GGNCC 3 cut(s) 332, 470, 510
BmrFI CCNGG 1 cut(s) 75
BmsI GCATC 3 cut(s) 239, 268, 290
BmtI GCTAGC 1 cut(s) 519
BpiI GAAGAC 2 cut(s) 615, 933
BpuEI CTTGAG 1 cut(s) 410
BsaI GGTCTC 1 cut(s) 743
BsaXI ACNNNNNCTCC 2 cut(s) 329, 359
Bsc4I CCNNNNNNNGG 7 cut(s) 80, 113, 354, 761, 764, 841, 995
Bse1I ACTGG 4 cut(s) 151, 886, 904, 1000
Bse3DI GCAATG 1 cut(s) 892
BseBI CCWGG 1 cut(s) 75
BseGI GGATG 3 cut(s) 70, 95, 301
BseLI CCNNNNNNNGG 7 cut(s) 80, 113, 354, 761, 764, 841, 995
BseMI GCAATG 1 cut(s) 892
BseMII CTCAG 3 cut(s) 253, 452, 754
BseNI ACTGG 4 cut(s) 151, 886, 904, 1000
BseRI GAGGAG 1 cut(s) 511
BseSI GKGCMC 1 cut(s) 659
BseXI GCAGC 2 cut(s) 239, 427
BsgI GTGCAG 1 cut(s) 531
BsiHKAI GWGCWC 3 cut(s) 36, 195, 659
BsiHKCI CYCGRG 1 cut(s) 505
BslFI GGGAC 1 cut(s) 90
BslI CCNNNNNNNGG 7 cut(s) 80, 113, 354, 761, 764, 841, 995
BsmAI GTCTC 5 cut(s) 418, 495, 704, 743, 928
BsmBI CGTCTC 1 cut(s) 704
BsmFI GGGAC 1 cut(s) 90
BsmI GAATGC 1 cut(s) 331
Bso31I GGTCTC 1 cut(s) 743
BsoBI CYCGRG 1 cut(s) 505
Bsp1286I GDGCHC 3 cut(s) 36, 195, 659
Bsp143I GATC 3 cut(s) 116, 375, 1011
BspACI CCGC 2 cut(s) 513, 765
BspCNI CTCAG 3 cut(s) 252, 453, 753
BspOI GCTAGC 1 cut(s) 519
BspPI GGATC 1 cut(s) 124
BspTNI GGTCTC 1 cut(s) 743
BsrDI GCAATG 1 cut(s) 892
BsrI ACTGG 4 cut(s) 151, 886, 904, 1000
BssMI GATC 3 cut(s) 116, 375, 1011
BssSI CACGAG 1 cut(s) 444
Bst2BI CACGAG 1 cut(s) 444
Bst2UI CCWGG 1 cut(s) 75
Bst4CI ACNGT 3 cut(s) 190, 412, 692
Bst6I CTCTTC 1 cut(s) 1013
BstC8I GCNNGC 2 cut(s) 396, 517
BstDEI CTNAG 4 cut(s) 239, 461, 740, 793
BstF5I GGATG 3 cut(s) 70, 95, 301
BstHHI GCGC 2 cut(s) 422, 530
BstKTI GATC 3 cut(s) 119, 378, 1014
BstMAI GTCTC 5 cut(s) 418, 495, 704, 743, 928
BstMBI GATC 3 cut(s) 116, 375, 1011
BstMWI GCNNNNNNNGC 4 cut(s) 440, 525, 803, 891
BstNI CCWGG 1 cut(s) 75
BstSCI CCNGG 1 cut(s) 73
BstSLI GKGCMC 1 cut(s) 659
BstV1I GCAGC 2 cut(s) 239, 427
BstV2I GAAGAC 2 cut(s) 615, 933
BstX2I RGATCY 1 cut(s) 116
BstYI RGATCY 1 cut(s) 116
BtsCI GGATG 3 cut(s) 70, 95, 301
BtsIMutI CAGTG 1 cut(s) 879
Cac8I GCNNGC 2 cut(s) 396, 517
CfoI GCGC 2 cut(s) 422, 530
Cfr13I GGNCC 3 cut(s) 332, 470, 510
CseI GACGC 1 cut(s) 721
CviAII CATG 4 cut(s) 477, 580, 973, 1028
DdeI CTNAG 4 cut(s) 239, 461, 740, 793
DpnI GATC 3 cut(s) 118, 377, 1013
DpnII GATC 3 cut(s) 116, 375, 1011
DraI TTTAAA 1 cut(s) 667
Eam1104I CTCTTC 1 cut(s) 1013
EarI CTCTTC 1 cut(s) 1013
Eco31I GGTCTC 1 cut(s) 743
Eco47I GGWCC 3 cut(s) 332, 470, 510
Eco88I CYCGRG 1 cut(s) 505
EcoRII CCWGG 1 cut(s) 73
EcoT22I ATGCAT 1 cut(s) 283
Esp3I CGTCTC 1 cut(s) 704
FaeI CATG 4 cut(s) 480, 583, 976, 1031
FalI AAGNNNNNCTT 4 cut(s) 372, 404, 597, 629
FaqI GGGAC 1 cut(s) 90
FatI CATG 4 cut(s) 476, 579, 972, 1027
Fnu4HI GCNGC 2 cut(s) 228, 441
FokI GGATG 3 cut(s) 57, 102, 308
Fsp4HI GCNGC 2 cut(s) 228, 441
FspBI CTAG 7 cut(s) 80, 431, 437, 491, 516, 716, 788
GlaI GCGC 2 cut(s) 421, 529
GluI GCNGC 2 cut(s) 228, 441
HgaI GACGC 1 cut(s) 721
HhaI GCGC 2 cut(s) 422, 530
Hin1II CATG 4 cut(s) 480, 583, 976, 1031
Hin6I GCGC 2 cut(s) 420, 528
HinP1I GCGC 2 cut(s) 420, 528
HincII GTYRAC 1 cut(s) 970
HindII GTYRAC 1 cut(s) 970
HindIII AAGCTT 3 cut(s) 14, 396, 915
HinfI GANTC 2 cut(s) 503, 810
HpaI GTTAAC 1 cut(s) 970
HphI GGTGA 3 cut(s) 774, 779, 1019
Hpy166II GTNNAC 5 cut(s) 164, 470, 657, 755, 970
Hpy188I TCNGA 2 cut(s) 242, 865
Hpy188III TCNNGA 3 cut(s) 627, 788, 1015
Hpy8I GTNNAC 5 cut(s) 164, 470, 657, 755, 970
Hpy99I CGWCG 1 cut(s) 374
HpyAV CCTTC 1 cut(s) 845
HpyCH4III ACNGT 3 cut(s) 190, 412, 692
HpyCH4IV ACGT 2 cut(s) 589, 662
HpyCH4V TGCA 6 cut(s) 281, 305, 548, 657, 806, 905
HpyF10VI GCNNNNNNNGC 4 cut(s) 440, 525, 803, 891
HpyF3I CTNAG 4 cut(s) 239, 461, 740, 793
HpySE526I ACGT 2 cut(s) 589, 662
Hsp92II CATG 4 cut(s) 480, 583, 976, 1031
HspAI GCGC 2 cut(s) 420, 528
KspAI GTTAAC 1 cut(s) 970
Kzo9I GATC 3 cut(s) 116, 375, 1011
LmnI GCTCC 2 cut(s) 481, 837
Lsp1109I GCAGC 2 cut(s) 239, 427
LweI GCATC 3 cut(s) 239, 268, 290
MaeI CTAG 7 cut(s) 80, 431, 437, 491, 516, 716, 788
MaeII ACGT 2 cut(s) 589, 662
MaeIII GTNAC 1 cut(s) 767
MalI GATC 3 cut(s) 118, 377, 1013
MboI GATC 3 cut(s) 116, 375, 1011
MboII GAAGA 5 cut(s) 617, 620, 934, 938, 1030
MflI RGATCY 1 cut(s) 116
MhlI GDGCHC 3 cut(s) 36, 195, 659
MluCI AATT 3 cut(s) 143, 747, 950
MlyI GAGTC 1 cut(s) 497
MmeI TCCRAC 3 cut(s) 273, 610, 970
Mph1103I ATGCAT 1 cut(s) 283
MroXI GAANNNNTTC 1 cut(s) 873
MseI TTAA 6 cut(s) 522, 575, 666, 969, 1002, 1035
MspR9I CCNGG 1 cut(s) 75
MssI GTTTAAAC 1 cut(s) 667
Mva1269I GAATGC 1 cut(s) 331
MvaI CCWGG 1 cut(s) 75
MwoI GCNNNNNNNGC 4 cut(s) 440, 525, 803, 891
NdeII GATC 3 cut(s) 116, 375, 1011
NheI GCTAGC 1 cut(s) 515
NlaIII CATG 4 cut(s) 480, 583, 976, 1031
NmuCI GTSAC 1 cut(s) 767
NsiI ATGCAT 1 cut(s) 283
PaeR7I CTCGAG 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 261
PctI GAATGC 1 cut(s) 331
PdmI GAANNNNTTC 1 cut(s) 873
PfeI GAWTC 1 cut(s) 810
PkrI GCNGC 2 cut(s) 229, 442
PleI GAGTC 1 cut(s) 497
PmeI GTTTAAAC 1 cut(s) 667
PpsI GAGTC 1 cut(s) 497
Psp1406I AACGTT 1 cut(s) 662
Psp6I CCWGG 1 cut(s) 73
PspGI CCWGG 1 cut(s) 73
PspPI GGNCC 3 cut(s) 332, 470, 510
PspXI VCTCGAGB 1 cut(s) 505
PsuI RGATCY 1 cut(s) 116
SaqAI TTAA 6 cut(s) 522, 575, 666, 969, 1002, 1035
SatI GCNGC 2 cut(s) 228, 441
Sau3AI GATC 3 cut(s) 116, 375, 1011
Sau96I GGNCC 3 cut(s) 332, 470, 510
SchI GAGTC 1 cut(s) 497
ScrFI CCNGG 1 cut(s) 75
SduI GDGCHC 3 cut(s) 36, 195, 659
SfaNI GCATC 3 cut(s) 239, 268, 290
Sfr274I CTCGAG 1 cut(s) 505
SinI GGWCC 3 cut(s) 332, 470, 510
SlaI CTCGAG 1 cut(s) 505
SmlI CTYRAG 2 cut(s) 389, 505
SmoI CTYRAG 2 cut(s) 389, 505
Sse9I AATT 3 cut(s) 143, 747, 950
SsiI CCGC 2 cut(s) 513, 765
SspI AATATT 1 cut(s) 778
SspMI CTAG 7 cut(s) 80, 431, 437, 491, 516, 716, 788
StyD4I CCNGG 1 cut(s) 73
TaaI ACNGT 3 cut(s) 190, 412, 692
TaiI ACGT 2 cut(s) 592, 665
TaqI TCGA 5 cut(s) 195, 369, 506, 813, 962
TasI AATT 3 cut(s) 143, 747, 950
TfiI GAWTC 1 cut(s) 810
Tru1I TTAA 6 cut(s) 522, 575, 666, 969, 1002, 1035
Tru9I TTAA 6 cut(s) 522, 575, 666, 969, 1002, 1035
TscAI CASTG 1 cut(s) 886
TseFI GTSAC 1 cut(s) 767
TseI GCWGC 2 cut(s) 227, 440
Tsp45I GTSAC 1 cut(s) 767
TspDTI ATGAA 1 cut(s) 882
TspGWI ACGGA 1 cut(s) 337
TspRI CASTG 1 cut(s) 886
VneI GTGCAC 1 cut(s) 655
VpaK11BI GGWCC 3 cut(s) 332, 470, 510
XbaI TCTAGA 1 cut(s) 787
XhoI CTCGAG 1 cut(s) 505
XmnI GAANNNNTTC 1 cut(s) 873
XspI CTAG 7 cut(s) 80, 431, 437, 491, 516, 716, 788
Zsp2I ATGCAT 1 cut(s) 283
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.