pycom04g18780

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr4
OG0015236
Physical Location & Seq
Forward (+)
20682498 .. 20683090
593 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom04g18780.1

Sequence Viewer

Length: 468 bp
ATGAATTTGACGATTATTAGGCACAAATTCAAGACTAAAGAGACTCAAAGATGTGACACTATTGTTAGTAGGTTGAATATTTTATGGATTTTTTTTTATATATACAATATCAATGCAGGAGGGCATACAATTGGGTTCACAAAATGTTTGTTCGTCAGGCAGACCCGGAAATCAGTTTGCCCTAGAAGAGATGGCGACAACACACCTGCTCCCTTGGACTTTGTTTCCCCTACAAGGTTCGACAACAGCTACTTCAAGCTTGTACTTGGGGGACATGGACTTCTCCCTTCAGACCAAGTGCTTCTGACTGGGAATGGAAGGCAGGCAGCTGAGCTGGTGAAAACCTATGCAGCTAATGAGAGCTTATTCTTTCAGCAGTTCGCCAAGTCCATGGTTAAGATGGGGAACATTAATCCTCTCACTGGATTAAAGGGACAAGTCCGGAAGAATTGCCGCCACGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

156

Amino Acids

17.6

Weight (kDa)

10.08

Isoelectric Point (pI)

41.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 39 - 119 6.2e-13 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 214
Acc36I ACCTGC 1 cut(s) 214
AccIII TCCGGA 1 cut(s) 441
AciI CCGC 1 cut(s) 454
AcsI RAATTY 2 cut(s) 4, 26
AcuI CTGAAG 1 cut(s) 273
AfaI GTAC 1 cut(s) 264
AfiI CCNNNNNNNGG 2 cut(s) 234, 422
AgsI TTSAA 3 cut(s) 31, 76, 256
AluBI AGCT 6 cut(s) 249, 259, 329, 334, 353, 363
AluI AGCT 6 cut(s) 249, 259, 329, 334, 353, 363
Alw26I GTCTC 1 cut(s) 35
Aor13HI TCCGGA 1 cut(s) 441
ApeKI GCWGC 2 cut(s) 326, 350
ApoI RAATTY 2 cut(s) 4, 26
AseI ATTAAT 1 cut(s) 411
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 1 cut(s) 349
BbvI GCAGC 2 cut(s) 338, 362
BccI CCATC 2 cut(s) 185, 394
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 1 cut(s) 183
BfuAI ACCTGC 1 cut(s) 214
BisI GCNGC 3 cut(s) 327, 351, 454
BlpI GCTNAGC 1 cut(s) 330
BlsI GCNGC 3 cut(s) 328, 352, 455
Bme1390I CCNGG 1 cut(s) 166
BmrFI CCNGG 1 cut(s) 166
BmrI ACTGGG 1 cut(s) 318
BmuI ACTGGG 1 cut(s) 318
Bpu1102I GCTNAGC 1 cut(s) 330
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 213, 390
BsaWI WCCGGW 1 cut(s) 441
BsaXI ACNNNNNCTCC 2 cut(s) 193, 223
Bsc4I CCNNNNNNNGG 2 cut(s) 234, 422
Bse1I ACTGG 2 cut(s) 313, 427
BseAI TCCGGA 1 cut(s) 441
BseDI CCNNGG 2 cut(s) 213, 390
BseLI CCNNNNNNNGG 2 cut(s) 234, 422
BseMII CTCAG 1 cut(s) 321
BseNI ACTGG 2 cut(s) 313, 427
BseXI GCAGC 2 cut(s) 338, 362
BsiSI CCGG 2 cut(s) 166, 442
BslFI GGGAC 2 cut(s) 285, 447
BslI CCNNNNNNNGG 2 cut(s) 234, 422
BsmAI GTCTC 1 cut(s) 35
BsmFI GGGAC 2 cut(s) 285, 447
Bsp13I TCCGGA 1 cut(s) 441
Bsp1720I GCTNAGC 1 cut(s) 330
Bsp19I CCATGG 1 cut(s) 390
BspACI CCGC 1 cut(s) 454
BspCNI CTCAG 1 cut(s) 322
BspEI TCCGGA 1 cut(s) 441
BspMI ACCTGC 1 cut(s) 214
BsrI ACTGG 2 cut(s) 313, 427
BssECI CCNNGG 2 cut(s) 213, 390
BssT1I CCWWGG 2 cut(s) 213, 390
Bst6I CTCTTC 1 cut(s) 181
BstC8I GCNNGC 1 cut(s) 324
BstDEI CTNAG 1 cut(s) 330
BstDSI CCRYGG 1 cut(s) 390
BstMAI GTCTC 1 cut(s) 35
BstSCI CCNGG 1 cut(s) 164
BstV1I GCAGC 2 cut(s) 338, 362
BstXI CCANNNNNNTGG 1 cut(s) 391
BtgI CCRYGG 1 cut(s) 390
BtsIMutI CAGTG 1 cut(s) 420
BveI ACCTGC 1 cut(s) 214
Cac8I GCNNGC 1 cut(s) 324
Csp6I GTAC 1 cut(s) 263
CviAII CATG 2 cut(s) 275, 391
CviJI RGCY 6 cut(s) 249, 259, 329, 334, 353, 363
CviKI_1 RGCY 6 cut(s) 249, 259, 329, 334, 353, 363
CviQI GTAC 1 cut(s) 263
DdeI CTNAG 1 cut(s) 330
Eam1104I CTCTTC 1 cut(s) 181
EarI CTCTTC 1 cut(s) 181
Eco130I CCWWGG 2 cut(s) 213, 390
Eco57I CTGAAG 1 cut(s) 273
EcoT14I CCWWGG 2 cut(s) 213, 390
ErhI CCWWGG 2 cut(s) 213, 390
FaeI CATG 2 cut(s) 278, 394
FaiI YATR 8 cut(s) 85, 99, 101, 103, 126, 276, 348, 392
FaqI GGGAC 2 cut(s) 285, 447
FatI CATG 2 cut(s) 274, 390
Fnu4HI GCNGC 3 cut(s) 327, 351, 454
Fsp4HI GCNGC 3 cut(s) 327, 351, 454
FspBI CTAG 1 cut(s) 183
GluI GCNGC 3 cut(s) 327, 351, 454
HapII CCGG 2 cut(s) 166, 442
Hin1II CATG 2 cut(s) 278, 394
HindIII AAGCTT 1 cut(s) 257
HinfI GANTC 1 cut(s) 43
HpaII CCGG 2 cut(s) 166, 442
HphI GGTGA 1 cut(s) 349
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 2 cut(s) 292, 306
Hpy188III TCNNGA 2 cut(s) 31, 442
Hpy8I GTNNAC 1 cut(s) 138
HpyAV CCTTC 2 cut(s) 297, 312
HpyCH4IV ACGT 1 cut(s) 459
HpyCH4V TGCA 2 cut(s) 116, 350
HpyF3I CTNAG 1 cut(s) 330
HpySE526I ACGT 1 cut(s) 459
Hsp92II CATG 2 cut(s) 278, 394
Kpn2I TCCGGA 1 cut(s) 441
LmnI GCTCC 1 cut(s) 214
LpnPI CCDG 9 cut(s) 102, 142, 179, 219, 294, 308, 320, 408, 455
Lsp1109I GCAGC 2 cut(s) 338, 362
MaeI CTAG 1 cut(s) 183
MaeII ACGT 1 cut(s) 459
MaeIII GTNAC 1 cut(s) 53
MboII GAAGA 2 cut(s) 198, 457
MfeI CAATTG 1 cut(s) 129
MluCI AATT 5 cut(s) 4, 26, 129, 448, 463
MlyI GAGTC 1 cut(s) 37
MnlI CCTC 2 cut(s) 113, 426
MroI TCCGGA 1 cut(s) 441
MseI TTAA 5 cut(s) 396, 411, 428, 462, 466
MspA1I CMGCKG 1 cut(s) 329
MspI CCGG 2 cut(s) 166, 442
MspR9I CCNGG 1 cut(s) 166
MunI CAATTG 1 cut(s) 129
NciI CCSGG 1 cut(s) 166
NcoI CCATGG 1 cut(s) 390
NlaIII CATG 2 cut(s) 278, 394
NmuCI GTSAC 1 cut(s) 53
PacI TTAATTAA 1 cut(s) 466
PaqCI CACCTGC 1 cut(s) 214
PkrI GCNGC 3 cut(s) 328, 352, 455
PleI GAGTC 1 cut(s) 37
PpsI GAGTC 1 cut(s) 37
PshBI ATTAAT 1 cut(s) 411
PvuII CAGCTG 1 cut(s) 329
RsaI GTAC 1 cut(s) 264
RsaNI GTAC 1 cut(s) 263
SaqAI TTAA 5 cut(s) 396, 411, 428, 462, 466
SatI GCNGC 3 cut(s) 327, 351, 454
SchI GAGTC 1 cut(s) 37
ScrFI CCNGG 1 cut(s) 166
Sse9I AATT 5 cut(s) 4, 26, 129, 448, 463
SsiI CCGC 1 cut(s) 454
SspI AATATT 1 cut(s) 79
SspMI CTAG 1 cut(s) 183
StyD4I CCNGG 1 cut(s) 164
StyI CCWWGG 2 cut(s) 213, 390
TaiI ACGT 1 cut(s) 462
TaqI TCGA 1 cut(s) 240
TasI AATT 5 cut(s) 4, 26, 129, 448, 463
TatI WGTACW 1 cut(s) 262
TauI GCSGC 1 cut(s) 456
Tru1I TTAA 5 cut(s) 396, 411, 428, 462, 466
Tru9I TTAA 5 cut(s) 396, 411, 428, 462, 466
TscAI CASTG 1 cut(s) 427
TseFI GTSAC 1 cut(s) 53
TseI GCWGC 2 cut(s) 326, 350
Tsp45I GTSAC 1 cut(s) 53
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 427
VspI ATTAAT 1 cut(s) 411
XapI RAATTY 2 cut(s) 4, 26
XcmI CCANNNNNNNNNTGG 1 cut(s) 397
XspI CTAG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.