Rh6CG434100

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0015236
Physical Location & Seq
Reverse (-)
61415979 .. 61417350
1372 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG434100.1

Sequence Viewer

Length: 1083 bp
ATGGCACGCTTCAAAGTAACTTGTTTAGCTCTTGTGGCAATGACATTGGTCTATTCGACCACACTCTGCGTAGCTCACCCGGTCGGTTTCAACTTTGGCTGGGGATGGGGTAGTCCCGGTGGAAATGGCGGTCACGGTGGAAACAGTGGCAATGGTGGAGGAGGGTACCCTGGTCTTTTTCCGGAATACTATCAGTTCTCATGCCCTCAAGCTAATGATATTGTCATGTCTGTGTTGCACAAGGCCATTGCAAACAATCCAAGAGTGGCTGCCTCTTTGCTTAGGCTTCACTTCCATGACTGCTTTGTTCAGGGTTGTGATGCATCTGTGCTACTGGACGACAGCGCGACAATTTCGAGTGAAAAGAATTCTGGTCCAAACAAGAACTCACTTAGAGGGTTTGAAGTGATAGATGAGATCAAGGCCAAGTTAGAAGAAGCTTGCCCTCAGACTGTTTCTTGTGCTGACATTCTTGCTCTTTCTGCTAGAGGCTCCACTGTACTAAGTGGTGGACCAAATTGGGTGTTACCACTAGGAAGAAGGGACTCGACGACTGCAAGTTTAACTGGCTCAAACAGAAACATTCCTGCACCAAATTCCAGTCTCCCAACCCTCTTAAACTTCTTCCAGCGTCAAGGCCTCGATGAAGAAGACCTTGTTACACTATCAGGAGGGCATACTATTGGGGTTGCAAGGTGCGTGACATTCAAGCAGAGGCTGTACAACCAAAATGGGAACAACCAACCCGACTCGACTCTTGAAAGATCCTACTACTTTGGTTTGAAATCGGTTTGCCCTAGTTCAGGTGGTGACAACAACATAAGCCCCTTGGACTTCTCTTCCCCTGCAAGATTTGACAATACCTACTTCAAGCTCATACTTTTGGGAAAAGGACTTCTTACTTCGGATCAAGCGCTTCTCACCGGAAATGTGGGGAAGACACTGGAGCTGGTCAAGAGCTTTTCGGATGATGAGGGCCTCTTCTTCCAGCACTTTGCTAAGTCCATGGTTAAGATGGGGAACATTAGGCCCCTCACTGGACTTAAGGGTCAAGTTAGGAAGAATTGTCGCCGAGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

360

Amino Acids

38.65

Weight (kDa)

8.64

Isoelectric Point (pI)

38.93

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 76 - 323 1.6e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1047
Acc65I GGTACC 1 cut(s) 165
AccB1I GGYRCC 1 cut(s) 165
AccII CGCG 1 cut(s) 347
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 1 cut(s) 129
AclWI GGATC 2 cut(s) 759, 915
AcsI RAATTY 2 cut(s) 367, 595
AfaI GTAC 3 cut(s) 167, 501, 722
AfeI AGCGCT 1 cut(s) 915
AfiI CCNNNNNNNGG 2 cut(s) 803, 1037
AflII CTTAAG 1 cut(s) 1043
AgsI TTSAA 7 cut(s) 13, 91, 404, 709, 761, 784, 871
AjnI CCWGG 1 cut(s) 169
AluBI AGCT 7 cut(s) 29, 74, 212, 440, 874, 949, 960
AluI AGCT 7 cut(s) 29, 74, 212, 440, 874, 949, 960
Alw26I GTCTC 1 cut(s) 608
AlwI GGATC 2 cut(s) 759, 915
AlwNI CAGNNNCTG 1 cut(s) 718
Aor13HI TCCGGA 1 cut(s) 181
Aor51HI AGCGCT 1 cut(s) 915
AoxI GGCC 5 cut(s) 243, 423, 637, 976, 1028
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 2 cut(s) 367, 595
Asp718I GGTACC 1 cut(s) 165
AspLEI GCGC 2 cut(s) 347, 916
AspS9I GGNCC 4 cut(s) 374, 512, 976, 1029
AsuC2I CCSGG 2 cut(s) 80, 117
AsuHPI GGTGA 3 cut(s) 68, 821, 913
AvaII GGWCC 2 cut(s) 374, 512
BaeI ACNNNNGTAYC 2 cut(s) 157, 190
BanI GGYRCC 1 cut(s) 165
BbsI GAAGAC 2 cut(s) 657, 944
BbvI GCAGC 1 cut(s) 256
BccI CCATC 2 cut(s) 99, 1009
BciT130I CCWGG 1 cut(s) 171
BcnI CCSGG 2 cut(s) 80, 117
BcoDI GTCTC 1 cut(s) 608
BfaI CTAG 3 cut(s) 486, 533, 798
BfoI RGCGCY 1 cut(s) 917
BfrI CTTAAG 1 cut(s) 1043
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 3 cut(s) 80, 117, 171
Bme18I GGWCC 2 cut(s) 374, 512
BmgT120I GGNCC 4 cut(s) 374, 512, 976, 1029
BmiI GGNNCC 3 cut(s) 167, 493, 1031
BmrFI CCNGG 3 cut(s) 80, 117, 171
BmsI GCATC 2 cut(s) 310, 332
BoxI GACNNNNGTC 1 cut(s) 47
BpiI GAAGAC 2 cut(s) 657, 944
BpmI CTGGAG 1 cut(s) 965
Bpu10I CCTNAGC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 192
BpuMI CCSGG 2 cut(s) 80, 117
BsaJI CCNNGG 3 cut(s) 169, 828, 1005
BsaWI WCCGGW 2 cut(s) 181, 923
Bsc4I CCNNNNNNNGG 2 cut(s) 803, 1037
Bse1I ACTGG 5 cut(s) 339, 571, 600, 948, 1042
Bse3DI GCAATG 3 cut(s) 45, 157, 246
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 171
BseDI CCNNGG 3 cut(s) 169, 828, 1005
BseGI GGATG 2 cut(s) 110, 973
BseLI CCNNNNNNNGG 2 cut(s) 803, 1037
BseMI GCAATG 3 cut(s) 45, 157, 246
BseMII CTCAG 1 cut(s) 461
BseNI ACTGG 5 cut(s) 339, 571, 600, 948, 1042
BseRI GAGGAG 1 cut(s) 174
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 573
Bsh1236I CGCG 1 cut(s) 347
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 5 cut(s) 245, 425, 639, 978, 1030
BshNI GGYRCC 1 cut(s) 165
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 4 cut(s) 80, 117, 182, 924
BslFI GGGAC 2 cut(s) 99, 557
BslI CCNNNNNNNGG 2 cut(s) 803, 1037
BsmAI GTCTC 1 cut(s) 608
BsmFI GGGAC 2 cut(s) 99, 557
BsnI GGCC 5 cut(s) 245, 425, 639, 978, 1030
Bsp13I TCCGGA 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 720
Bsp143I GATC 3 cut(s) 417, 764, 907
Bsp19I CCATGG 1 cut(s) 1005
BspACI CCGC 1 cut(s) 129
BspANI GGCC 5 cut(s) 245, 425, 639, 978, 1030
BspCNI CTCAG 1 cut(s) 460
BspEI TCCGGA 1 cut(s) 181
BspFNI CGCG 1 cut(s) 347
BspLI GGNNCC 3 cut(s) 167, 493, 1031
BspPI GGATC 2 cut(s) 759, 915
BspT107I GGYRCC 1 cut(s) 165
BspTI CTTAAG 1 cut(s) 1043
BsrDI GCAATG 3 cut(s) 45, 157, 246
BsrGI TGTACA 1 cut(s) 720
BsrI ACTGG 5 cut(s) 339, 571, 600, 948, 1042
BssECI CCNNGG 3 cut(s) 169, 828, 1005
BssMI GATC 3 cut(s) 417, 764, 907
BssT1I CCWWGG 2 cut(s) 828, 1005
Bst2UI CCWGG 1 cut(s) 171
Bst4CI ACNGT 4 cut(s) 137, 146, 454, 499
Bst6I CTCTTC 2 cut(s) 844, 986
BstAFI CTTAAG 1 cut(s) 1043
BstAUI TGTACA 1 cut(s) 720
BstC8I GCNNGC 2 cut(s) 7, 442
BstDEI CTNAG 5 cut(s) 281, 392, 447, 503, 999
BstDSI CCRYGG 1 cut(s) 1005
BstENI CCTNNNNNAGG 1 cut(s) 801
BstF5I GGATG 2 cut(s) 110, 973
BstFNI CGCG 1 cut(s) 347
BstH2I RGCGCY 1 cut(s) 917
BstHHI GCGC 2 cut(s) 347, 916
BstKTI GATC 3 cut(s) 420, 767, 910
BstMAI GTCTC 1 cut(s) 608
BstMBI GATC 3 cut(s) 417, 764, 907
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 2 cut(s) 35, 482
BstNI CCWGG 1 cut(s) 171
BstPAI GACNNNNGTC 1 cut(s) 47
BstSCI CCNGG 3 cut(s) 78, 115, 169
BstUI CGCG 1 cut(s) 347
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 2 cut(s) 657, 944
BstX2I RGATCY 1 cut(s) 764
BstYI RGATCY 1 cut(s) 764
BsuRI GGCC 5 cut(s) 245, 425, 639, 978, 1030
BtgI CCRYGG 1 cut(s) 1005
BtsCI GGATG 2 cut(s) 110, 973
BtsIMutI CAGTG 4 cut(s) 151, 495, 941, 1035
Cac8I GCNNGC 2 cut(s) 7, 442
CaiI CAGNNNCTG 1 cut(s) 718
CfoI GCGC 2 cut(s) 347, 916
Cfr13I GGNCC 4 cut(s) 374, 512, 976, 1029
CseI GACGC 1 cut(s) 620
Csp6I GTAC 3 cut(s) 166, 500, 721
CviAII CATG 4 cut(s) 201, 226, 296, 1006
CviQI GTAC 3 cut(s) 166, 500, 721
DdeI CTNAG 5 cut(s) 281, 392, 447, 503, 999
DpnI GATC 3 cut(s) 419, 766, 909
DpnII GATC 3 cut(s) 417, 764, 907
DrdI GACNNNNNNGTC 1 cut(s) 1047
DseDI GACNNNNNNGTC 1 cut(s) 1047
Eam1104I CTCTTC 2 cut(s) 844, 986
EarI CTCTTC 2 cut(s) 844, 986
Eco130I CCWWGG 2 cut(s) 828, 1005
Eco147I AGGCCT 1 cut(s) 639
Eco47I GGWCC 2 cut(s) 374, 512
Eco47III AGCGCT 1 cut(s) 915
EcoNI CCTNNNNNAGG 1 cut(s) 801
EcoO109I RGGNCCY 2 cut(s) 976, 1029
EcoRI GAATTC 1 cut(s) 367
EcoRII CCWGG 1 cut(s) 169
EcoT14I CCWWGG 2 cut(s) 828, 1005
EcoT22I ATGCAT 1 cut(s) 325
ErhI CCWWGG 2 cut(s) 828, 1005
FaeI CATG 4 cut(s) 204, 229, 299, 1009
FaiI YATR 7 cut(s) 202, 227, 297, 678, 821, 878, 1007
FalI AAGNNNNNCTT 4 cut(s) 639, 671, 882, 914
FaqI GGGAC 2 cut(s) 99, 557
FatI CATG 4 cut(s) 200, 225, 295, 1005
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 117, 980
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 3 cut(s) 486, 533, 798
GlaI GCGC 2 cut(s) 346, 915
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 103
GsuI CTGGAG 1 cut(s) 965
HaeII RGCGCY 1 cut(s) 917
HaeIII GGCC 5 cut(s) 245, 425, 639, 978, 1030
HapII CCGG 4 cut(s) 80, 117, 182, 924
HgaI GACGC 1 cut(s) 620
HhaI GCGC 2 cut(s) 347, 916
Hin1II CATG 4 cut(s) 204, 229, 299, 1009
Hin6I GCGC 2 cut(s) 345, 914
HinP1I GCGC 2 cut(s) 345, 914
HindIII AAGCTT 1 cut(s) 438
HinfI GANTC 3 cut(s) 545, 749, 754
HpaII CCGG 4 cut(s) 80, 117, 182, 924
HphI GGTGA 3 cut(s) 68, 821, 913
Hpy166II GTNNAC 1 cut(s) 512
Hpy188I TCNGA 3 cut(s) 450, 907, 967
Hpy188III TCNNGA 4 cut(s) 182, 669, 758, 955
Hpy8I GTNNAC 1 cut(s) 512
Hpy99I CGWCG 1 cut(s) 553
HpyAV CCTTC 1 cut(s) 534
HpyCH4III ACNGT 4 cut(s) 137, 146, 454, 499
HpyCH4V TGCA 7 cut(s) 238, 251, 323, 557, 590, 692, 848
HpyF10VI GCNNNNNNNGC 2 cut(s) 35, 482
HpyF3I CTNAG 5 cut(s) 281, 392, 447, 503, 999
Hsp92II CATG 4 cut(s) 204, 229, 299, 1009
HspAI GCGC 2 cut(s) 345, 914
Kpn2I TCCGGA 1 cut(s) 181
KpnI GGTACC 1 cut(s) 169
Kzo9I GATC 3 cut(s) 417, 764, 907
LmnI GCTCC 2 cut(s) 497, 946
Lsp1109I GCAGC 1 cut(s) 256
LweI GCATC 2 cut(s) 310, 332
MaeI CTAG 3 cut(s) 486, 533, 798
MaeIII GTNAC 6 cut(s) 16, 131, 525, 658, 700, 809
MalI GATC 3 cut(s) 419, 766, 909
MboI GATC 3 cut(s) 417, 764, 907
MflI RGATCY 1 cut(s) 764
MluCI AATT 6 cut(s) 351, 367, 517, 595, 1063, 1078
MlyI GAGTC 3 cut(s) 539, 743, 748
Mph1103I ATGCAT 1 cut(s) 325
MroI TCCGGA 1 cut(s) 181
MseI TTAA 6 cut(s) 563, 617, 1011, 1044, 1077, 1081
MslI CAYNNNNRTG 2 cut(s) 230, 294
MspCI CTTAAG 1 cut(s) 1043
MspI CCGG 4 cut(s) 80, 117, 182, 924
MspR9I CCNGG 3 cut(s) 80, 117, 171
MvaI CCWGG 1 cut(s) 171
MvnI CGCG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 35, 482
NciI CCSGG 2 cut(s) 80, 117
NcoI CCATGG 1 cut(s) 1005
NdeII GATC 3 cut(s) 417, 764, 907
NlaIII CATG 4 cut(s) 204, 229, 299, 1009
NlaIV GGNNCC 3 cut(s) 167, 493, 1031
NmuCI GTSAC 3 cut(s) 131, 700, 809
NsiI ATGCAT 1 cut(s) 325
PacI TTAATTAA 1 cut(s) 1081
PceI AGGCCT 1 cut(s) 639
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 3 cut(s) 539, 743, 748
PpsI GAGTC 3 cut(s) 539, 743, 748
PshAI GACNNNNGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 169
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 169
PspN4I GGNNCC 3 cut(s) 167, 493, 1031
PspPI GGNCC 4 cut(s) 374, 512, 976, 1029
PstNI CAGNNNCTG 1 cut(s) 718
PsuI RGATCY 1 cut(s) 764
RsaI GTAC 3 cut(s) 167, 501, 722
RsaNI GTAC 3 cut(s) 166, 500, 721
RseI CAYNNNNRTG 2 cut(s) 230, 294
SaqAI TTAA 6 cut(s) 563, 617, 1011, 1044, 1077, 1081
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 3 cut(s) 417, 764, 907
Sau96I GGNCC 4 cut(s) 374, 512, 976, 1029
SchI GAGTC 3 cut(s) 539, 743, 748
ScrFI CCNGG 3 cut(s) 80, 117, 171
SfaNI GCATC 2 cut(s) 310, 332
SinI GGWCC 2 cut(s) 374, 512
SmiMI CAYNNNNRTG 2 cut(s) 230, 294
SmlI CTYRAG 2 cut(s) 207, 1043
SmoI CTYRAG 2 cut(s) 207, 1043
Sse9I AATT 6 cut(s) 351, 367, 517, 595, 1063, 1078
SseBI AGGCCT 1 cut(s) 639
SsiI CCGC 1 cut(s) 129
SspMI CTAG 3 cut(s) 486, 533, 798
StuI AGGCCT 1 cut(s) 639
StyD4I CCNGG 3 cut(s) 78, 115, 169
StyI CCWWGG 2 cut(s) 828, 1005
TaaI ACNGT 4 cut(s) 137, 146, 454, 499
TaqI TCGA 5 cut(s) 56, 356, 548, 642, 752
TasI AATT 6 cut(s) 351, 367, 517, 595, 1063, 1078
TatI WGTACW 2 cut(s) 499, 720
Tru1I TTAA 6 cut(s) 563, 617, 1011, 1044, 1077, 1081
Tru9I TTAA 6 cut(s) 563, 617, 1011, 1044, 1077, 1081
TscAI CASTG 4 cut(s) 151, 502, 948, 1042
TseFI GTSAC 3 cut(s) 131, 700, 809
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 3 cut(s) 131, 700, 809
TspDTI ATGAA 1 cut(s) 660
TspRI CASTG 4 cut(s) 151, 502, 948, 1042
Vha464I CTTAAG 1 cut(s) 1043
VpaK11BI GGWCC 2 cut(s) 374, 512
XagI CCTNNNNNAGG 1 cut(s) 801
XapI RAATTY 2 cut(s) 367, 595
XcmI CCANNNNNNNNNTGG 1 cut(s) 1012
XspI CTAG 3 cut(s) 486, 533, 798
Zsp2I ATGCAT 1 cut(s) 325
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.