RLG00000011229

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0015236
Physical Location & Seq
Forward (+)
7814583 .. 7815953
1371 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000011229

Sequence Viewer

Length: 891 bp
ATGGCACGCTTCAAAGTAACTTGTTTAGCTCTTGTGGCGATGACATTGGTCTATTCGACCACACTCTGCGTAGCTCACCCGGTCGGTTTCAACTTTGGCTGGGGATGGGGTAGTCCTGGTGGAAATGGCGGTCACGGTGGAAACAGTGGCAATGGTGGAGGACAGTACCCTCGTCTTTTTCCGGAATACTATCAGTTCTCATGCCCTCAAGCTAATGATATTGTCATGTCTGTGTTGCACAAGGCCATTGCAAACAATCCAAGAGTGGCTGCCTCTTTGCTTAGGCTTCACTTCCATGACTGCTTTGTTCAGAGTGGTGGACCAAATTGGGTGTTACCACTAGGAAGAAGGGACTCGACGACTGCAAGTTTAACTGGCTCAAACAGAAACATTCCTGCACCAAATTCCAGTCTCCCAACCCTCTTAAACTTCTTCCAGCGTCAAGGCCTCGATGAAGTAGACCTTGTTGCACTATCAGGAGGGCATACTATTGGGATTGCAAGGTGCGTGACATTCAAGCAGAGGCTGTACAACCAAAATGGGAACAACCAACCCGACTCAACTCTTGAAAGATCCTACTACTTTGGTTTGAAATCGGTTTGCCCTAGTTCAGGTGGTGACAACAACATAAGCCCCTTGGACTTCTCTTCCCCTGCAAGATTTGACAATACCTACTTCAAGCTCATACTTTTGGGAAAAGGACTTCTTACTTCGGACCAAGTGCTTCTCACCGGAAATGTGGGGAAGACAATGGAGCTGGTCAAGAGCTTTTCGGATGATGAGGGCCTCTTCTTCCAGCACTTTGCTACGTCCATGGTTAAGATGGGGAACATTAGGCCTCTCACTGGACTTAAGGGTCAAGTTAGGAAGAATTGTCGCCGAGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

297

Amino Acids

32.18

Weight (kDa)

9.41

Isoelectric Point (pI)

34.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 104 - 259 1.3e-39 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 855
AccI GTMKAC 1 cut(s) 459
AccIII TCCGGA 1 cut(s) 181
AciI CCGC 1 cut(s) 129
AclWI GGATC 1 cut(s) 567
AcsI RAATTY 1 cut(s) 403
AfaI GTAC 2 cut(s) 167, 530
AfiI CCNNNNNNNGG 2 cut(s) 611, 845
AflII CTTAAG 1 cut(s) 851
AgsI TTSAA 6 cut(s) 13, 91, 517, 569, 592, 679
AjnI CCWGG 1 cut(s) 115
AluBI AGCT 6 cut(s) 29, 74, 212, 682, 757, 768
AluI AGCT 6 cut(s) 29, 74, 212, 682, 757, 768
Alw26I GTCTC 1 cut(s) 416
AlwI GGATC 1 cut(s) 567
AlwNI CAGNNNCTG 1 cut(s) 526
Aor13HI TCCGGA 1 cut(s) 181
AoxI GGCC 4 cut(s) 243, 445, 784, 836
ApeKI GCWGC 1 cut(s) 269
ApoI RAATTY 1 cut(s) 403
AspS9I GGNCC 3 cut(s) 320, 715, 784
AsuC2I CCSGG 1 cut(s) 80
AsuHPI GGTGA 3 cut(s) 68, 629, 721
AvaII GGWCC 2 cut(s) 320, 715
BbsI GAAGAC 1 cut(s) 752
BbvI GCAGC 1 cut(s) 256
BccI CCATC 2 cut(s) 99, 817
BciT130I CCWGG 1 cut(s) 117
BcnI CCSGG 1 cut(s) 80
BcoDI GTCTC 1 cut(s) 416
BfaI CTAG 2 cut(s) 341, 606
BfrI CTTAAG 1 cut(s) 851
BisI GCNGC 1 cut(s) 270
BlsI GCNGC 1 cut(s) 271
Bme1390I CCNGG 2 cut(s) 80, 117
Bme18I GGWCC 2 cut(s) 320, 715
BmgT120I GGNCC 3 cut(s) 320, 715, 784
BmrFI CCNGG 2 cut(s) 80, 117
BoxI GACNNNNGTC 1 cut(s) 47
BpiI GAAGAC 1 cut(s) 752
Bpu10I CCTNAGC 1 cut(s) 281
BpuEI CTTGAG 1 cut(s) 192
BpuMI CCSGG 1 cut(s) 80
BsaJI CCNNGG 2 cut(s) 636, 813
BsaWI WCCGGW 2 cut(s) 181, 731
Bsc4I CCNNNNNNNGG 2 cut(s) 611, 845
Bse1I ACTGG 3 cut(s) 379, 408, 850
Bse3DI GCAATG 2 cut(s) 157, 246
BseAI TCCGGA 1 cut(s) 181
BseBI CCWGG 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 636, 813
BseGI GGATG 2 cut(s) 110, 781
BseLI CCNNNNNNNGG 2 cut(s) 611, 845
BseMI GCAATG 2 cut(s) 157, 246
BseNI ACTGG 3 cut(s) 379, 408, 850
BseXI GCAGC 1 cut(s) 256
BseYI CCCAGC 1 cut(s) 99
BsgI GTGCAG 1 cut(s) 381
Bsh1285I CGRYCG 1 cut(s) 84
BshFI GGCC 4 cut(s) 245, 447, 786, 838
BsiEI CGRYCG 1 cut(s) 84
BsiSI CCGG 3 cut(s) 80, 182, 732
BslFI GGGAC 1 cut(s) 365
BslI CCNNNNNNNGG 2 cut(s) 611, 845
BsmAI GTCTC 1 cut(s) 416
BsmFI GGGAC 1 cut(s) 365
BsnI GGCC 4 cut(s) 245, 447, 786, 838
Bsp13I TCCGGA 1 cut(s) 181
Bsp1407I TGTACA 1 cut(s) 528
Bsp143I GATC 1 cut(s) 572
Bsp19I CCATGG 1 cut(s) 813
BspACI CCGC 1 cut(s) 129
BspANI GGCC 4 cut(s) 245, 447, 786, 838
BspEI TCCGGA 1 cut(s) 181
BspPI GGATC 1 cut(s) 567
BspTI CTTAAG 1 cut(s) 851
BsrDI GCAATG 2 cut(s) 157, 246
BsrGI TGTACA 1 cut(s) 528
BsrI ACTGG 3 cut(s) 379, 408, 850
BssECI CCNNGG 2 cut(s) 636, 813
BssMI GATC 1 cut(s) 572
BssT1I CCWWGG 2 cut(s) 636, 813
Bst2UI CCWGG 1 cut(s) 117
Bst4CI ACNGT 3 cut(s) 137, 146, 165
Bst6I CTCTTC 2 cut(s) 652, 794
BstAFI CTTAAG 1 cut(s) 851
BstAUI TGTACA 1 cut(s) 528
BstC8I GCNNGC 1 cut(s) 7
BstDEI CTNAG 1 cut(s) 281
BstDSI CCRYGG 1 cut(s) 813
BstENI CCTNNNNNAGG 1 cut(s) 609
BstF5I GGATG 2 cut(s) 110, 781
BstKTI GATC 1 cut(s) 575
BstMAI GTCTC 1 cut(s) 416
BstMBI GATC 1 cut(s) 572
BstMCI CGRYCG 1 cut(s) 84
BstMWI GCNNNNNNNGC 1 cut(s) 35
BstNI CCWGG 1 cut(s) 117
BstPAI GACNNNNGTC 1 cut(s) 47
BstSCI CCNGG 2 cut(s) 78, 115
BstV1I GCAGC 1 cut(s) 256
BstV2I GAAGAC 1 cut(s) 752
BstX2I RGATCY 1 cut(s) 572
BstYI RGATCY 1 cut(s) 572
BsuRI GGCC 4 cut(s) 245, 447, 786, 838
BtgI CCRYGG 1 cut(s) 813
BtgZI GCGATG 1 cut(s) 53
BtsCI GGATG 2 cut(s) 110, 781
BtsIMutI CAGTG 2 cut(s) 151, 843
Cac8I GCNNGC 1 cut(s) 7
CaiI CAGNNNCTG 1 cut(s) 526
Cfr13I GGNCC 3 cut(s) 320, 715, 784
CseI GACGC 1 cut(s) 428
Csp6I GTAC 2 cut(s) 166, 529
CviAII CATG 4 cut(s) 201, 226, 296, 814
CviQI GTAC 2 cut(s) 166, 529
DdeI CTNAG 1 cut(s) 281
DpnI GATC 1 cut(s) 574
DpnII GATC 1 cut(s) 572
DrdI GACNNNNNNGTC 1 cut(s) 855
DseDI GACNNNNNNGTC 1 cut(s) 855
Eam1104I CTCTTC 2 cut(s) 652, 794
EarI CTCTTC 2 cut(s) 652, 794
Eco130I CCWWGG 2 cut(s) 636, 813
Eco147I AGGCCT 2 cut(s) 447, 838
Eco47I GGWCC 2 cut(s) 320, 715
EcoNI CCTNNNNNAGG 1 cut(s) 609
EcoO109I RGGNCCY 1 cut(s) 784
EcoRII CCWGG 1 cut(s) 115
EcoT14I CCWWGG 2 cut(s) 636, 813
ErhI CCWWGG 2 cut(s) 636, 813
FaeI CATG 4 cut(s) 204, 229, 299, 817
FaiI YATR 7 cut(s) 202, 227, 297, 486, 629, 686, 815
FalI AAGNNNNNCTT 4 cut(s) 447, 479, 690, 722
FaqI GGGAC 1 cut(s) 365
FatI CATG 4 cut(s) 200, 225, 295, 813
FblI GTMKAC 1 cut(s) 459
Fnu4HI GCNGC 1 cut(s) 270
FokI GGATG 2 cut(s) 117, 788
Fsp4HI GCNGC 1 cut(s) 270
FspBI CTAG 2 cut(s) 341, 606
GluI GCNGC 1 cut(s) 270
GsaI CCCAGC 1 cut(s) 103
HaeIII GGCC 4 cut(s) 245, 447, 786, 838
HapII CCGG 3 cut(s) 80, 182, 732
HgaI GACGC 1 cut(s) 428
Hin1II CATG 4 cut(s) 204, 229, 299, 817
HinfI GANTC 2 cut(s) 353, 557
HpaII CCGG 3 cut(s) 80, 182, 732
HphI GGTGA 3 cut(s) 68, 629, 721
Hpy166II GTNNAC 2 cut(s) 320, 460
Hpy188I TCNGA 3 cut(s) 312, 715, 775
Hpy188III TCNNGA 4 cut(s) 182, 477, 566, 763
Hpy8I GTNNAC 2 cut(s) 320, 460
Hpy99I CGWCG 1 cut(s) 361
HpyAV CCTTC 1 cut(s) 342
HpyCH4III ACNGT 3 cut(s) 137, 146, 165
HpyCH4IV ACGT 1 cut(s) 809
HpyCH4V TGCA 7 cut(s) 238, 251, 365, 398, 470, 500, 656
HpyF10VI GCNNNNNNNGC 1 cut(s) 35
HpyF3I CTNAG 1 cut(s) 281
HpySE526I ACGT 1 cut(s) 809
Hsp92II CATG 4 cut(s) 204, 229, 299, 817
Kpn2I TCCGGA 1 cut(s) 181
Kzo9I GATC 1 cut(s) 572
LmnI GCTCC 1 cut(s) 754
Lsp1109I GCAGC 1 cut(s) 256
MaeI CTAG 2 cut(s) 341, 606
MaeII ACGT 1 cut(s) 809
MaeIII GTNAC 5 cut(s) 16, 131, 333, 508, 617
MalI GATC 1 cut(s) 574
MboI GATC 1 cut(s) 572
MboII GAAGA 7 cut(s) 357, 424, 639, 757, 781, 784, 880
MflI RGATCY 1 cut(s) 572
MluCI AATT 4 cut(s) 325, 403, 871, 886
MlyI GAGTC 2 cut(s) 347, 551
MroI TCCGGA 1 cut(s) 181
MseI TTAA 6 cut(s) 371, 425, 819, 852, 885, 889
MslI CAYNNNNRTG 2 cut(s) 230, 294
MspCI CTTAAG 1 cut(s) 851
MspI CCGG 3 cut(s) 80, 182, 732
MspR9I CCNGG 2 cut(s) 80, 117
MvaI CCWGG 1 cut(s) 117
MwoI GCNNNNNNNGC 1 cut(s) 35
NciI CCSGG 1 cut(s) 80
NcoI CCATGG 1 cut(s) 813
NdeII GATC 1 cut(s) 572
NlaIII CATG 4 cut(s) 204, 229, 299, 817
NmuCI GTSAC 3 cut(s) 131, 508, 617
PacI TTAATTAA 1 cut(s) 889
PceI AGGCCT 2 cut(s) 447, 838
PkrI GCNGC 1 cut(s) 271
PleI GAGTC 2 cut(s) 347, 551
PpsI GAGTC 2 cut(s) 347, 551
PshAI GACNNNNGTC 1 cut(s) 47
Psp6I CCWGG 1 cut(s) 115
PspFI CCCAGC 1 cut(s) 99
PspGI CCWGG 1 cut(s) 115
PspPI GGNCC 3 cut(s) 320, 715, 784
PstNI CAGNNNCTG 1 cut(s) 526
PsuI RGATCY 1 cut(s) 572
RsaI GTAC 2 cut(s) 167, 530
RsaNI GTAC 2 cut(s) 166, 529
RseI CAYNNNNRTG 2 cut(s) 230, 294
SaqAI TTAA 6 cut(s) 371, 425, 819, 852, 885, 889
SatI GCNGC 1 cut(s) 270
Sau3AI GATC 1 cut(s) 572
Sau96I GGNCC 3 cut(s) 320, 715, 784
SchI GAGTC 2 cut(s) 347, 551
ScrFI CCNGG 2 cut(s) 80, 117
SinI GGWCC 2 cut(s) 320, 715
SmiMI CAYNNNNRTG 2 cut(s) 230, 294
SmlI CTYRAG 2 cut(s) 207, 851
SmoI CTYRAG 2 cut(s) 207, 851
Sse9I AATT 4 cut(s) 325, 403, 871, 886
SseBI AGGCCT 2 cut(s) 447, 838
SsiI CCGC 1 cut(s) 129
SspMI CTAG 2 cut(s) 341, 606
StuI AGGCCT 2 cut(s) 447, 838
StyD4I CCNGG 2 cut(s) 78, 115
StyI CCWWGG 2 cut(s) 636, 813
TaaI ACNGT 3 cut(s) 137, 146, 165
TaiI ACGT 1 cut(s) 812
TaqI TCGA 3 cut(s) 56, 356, 450
TasI AATT 4 cut(s) 325, 403, 871, 886
TatI WGTACW 1 cut(s) 528
Tru1I TTAA 6 cut(s) 371, 425, 819, 852, 885, 889
Tru9I TTAA 6 cut(s) 371, 425, 819, 852, 885, 889
TscAI CASTG 2 cut(s) 151, 850
TseFI GTSAC 3 cut(s) 131, 508, 617
TseI GCWGC 1 cut(s) 269
Tsp45I GTSAC 3 cut(s) 131, 508, 617
TspDTI ATGAA 1 cut(s) 468
TspRI CASTG 2 cut(s) 151, 850
Vha464I CTTAAG 1 cut(s) 851
VpaK11BI GGWCC 2 cut(s) 320, 715
XagI CCTNNNNNAGG 1 cut(s) 609
XapI RAATTY 1 cut(s) 403
XcmI CCANNNNNNNNNTGG 1 cut(s) 820
XmiI GTMKAC 1 cut(s) 459
XspI CTAG 2 cut(s) 341, 606
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.