Rorug06G0308300

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0015236
Physical Location & Seq
Reverse (-)
46008329 .. 46009705
1377 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0308300.1

Sequence Viewer

Length: 1377 bp
ATGAATTGCACAAACCTTATAGAACTAAATTTATTAGGCAATCAGTTCCAAGGGGATATTTCCACGCTTAATTTCTCAAAACTTAGTCAACTTACTAGACTTGACCTCCTGTCCAATAACTTGAATGGCAGTTTGCCAATCAGTCTTTACTCATGCAAGTCCCTGAAAGCAATTCGACTTGGTGGAAACGATATAGAAGGACAAATACAACCTGAGATTCTATCATTGAAATCCTTGTCCTTCCTCTCACTTTCTTACAATAGATTGAGCAATATCACAAATGCAATGAACATATTGAGGCATTCCAAAAGTCTCATATTTCTATCCTTTGCATTTAGTTATGTAGCAGACGAGGAAAGTCCAGCTGATTTCAGCATAGCTGATTTTGATGGGTTCCAAAGTCTTCGAGTTTTGGATTTGAGTGGTTGTAACCTCACCGGTGAGATGCCTGCATGGTTATCGAAGCTCAAGAATCTAGCAGTATTACACCTATATTCTAATAAAATCACAGGGCCAGTTCCAAGTCAACTGGGGACTCTCCCAAGGCTGTTTCATATACATTTGGGTTCAAACAGAATTGCAGGTGAATTTCCAAAGCAACTTTTGAGACTACCTATGTTGGTATCTAAATCTAAACAAAATGCAGATCATCATGTTTATGATCTTGAACTGCCTATGTACGCAACAAGTAATGGTCGAATAGGTCAGCCATACAATTCTTTGTCATTCTATCCACCGGCGATATACTTGGGGTACAACAACATACATGGAAGTATACCTATTGAAATCGGCCAATTGGACTCTCTCCATCAGTTGGGGCTTGACCATAACAACTTCACTGGCAACATTCCAGGCCAAATATCTAACCTCAAAGACTTGTTTTATTTGGATCTCTCCGTGAATCATTTGTCTGGAGAAATCCCATCATCATTGACTAGTCTGCATTTTTTGTCATTTATCAACGTCTCCTACAACAATCTGGAAGGGCAAATACCAACAGGCACTCAGTTCCAAGGCTTTGATGTATCTGCATTTGAAGGGAACCCGAAACTTTGTGGTCTTCCACTTCCAAATGAGTGCCAAGCACTTAAGGGATTTGATCAAGATGTGGACAAGGAGCATCAAATTTTTTGTCATTTATCAACGTCTCCTACAACAATCTGGAAGGGCAAATACCAACAGGCACTCAGTTCCAAGGCTTTGATGTATCTGCATTTGAAGGGAACCCGAAACTTTGTGGTCTTCCACTTCCAAATGAGTGCCAAGCACTTAAGGGATTTGATCAAGATGTGGACAAGGAGCATCAAATTCCATGGTTTTATGTTTCTGCTGCGCTTGGGTTTATTGTATGATTCTGGGGAGTCTGTGGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

458

Amino Acids

51.19

Weight (kDa)

7.3

Isoelectric Point (pI)

39.8

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
LRR_8 PF13855 134 - 193 2.5e-09 Leucine rich repeat
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 572
Acc36I ACCTGC 1 cut(s) 572
AccB7I CCANNNNNTGG 1 cut(s) 814
AccI GTMKAC 1 cut(s) 775
AclWI GGATC 1 cut(s) 897
AcoI YGGCCR 1 cut(s) 790
AcsI RAATTY 4 cut(s) 28, 587, 1125, 1307
AfaI GTAC 2 cut(s) 680, 755
AfiI CCNNNNNNNGG 1 cut(s) 814
AflII CTTAAG 2 cut(s) 1088, 1270
AgeI ACCGGT 1 cut(s) 437
AgsI TTSAA 7 cut(s) 124, 229, 570, 668, 785, 1037, 1219
AhdI GACNNNNNGTC 1 cut(s) 109
AhlI ACTAGT 1 cut(s) 935
AjnI CCWGG 1 cut(s) 850
AluBI AGCT 3 cut(s) 365, 380, 466
AluI AGCT 3 cut(s) 365, 380, 466
Alw26I GTCTC 4 cut(s) 317, 601, 970, 1152
AlwI GGATC 1 cut(s) 897
AoxI GGCC 3 cut(s) 512, 790, 853
ApeKI GCWGC 1 cut(s) 1330
ApoI RAATTY 4 cut(s) 28, 587, 1125, 1307
ArsI GACNNNNNNTTYG 2 cut(s) 1117, 1149
AsiGI ACCGGT 1 cut(s) 437
AspLEI GCGC 1 cut(s) 1335
AspS9I GGNCC 1 cut(s) 512
AsuHPI GGTGA 3 cut(s) 427, 452, 596
BarI GAAGNNNNNNTAC 6 cut(s) 189, 221, 975, 1007, 1157, 1189
BbsI GAAGAC 3 cut(s) 395, 1052, 1234
BbvI GCAGC 1 cut(s) 1317
BccI CCATC 3 cut(s) 383, 816, 931
BcgI CGANNNNNNTGC 2 cut(s) 441, 475
BciT130I CCWGG 1 cut(s) 852
BclI TGATCA 2 cut(s) 1099, 1281
BcoDI GTCTC 4 cut(s) 317, 601, 970, 1152
BcuI ACTAGT 1 cut(s) 935
BfaI CTAG 3 cut(s) 96, 476, 936
BfrI CTTAAG 2 cut(s) 1088, 1270
BfuAI ACCTGC 1 cut(s) 572
BisI GCNGC 1 cut(s) 1331
BlsI GCNGC 1 cut(s) 1332
Bme1390I CCNGG 1 cut(s) 852
BmeRI GACNNNNNGTC 1 cut(s) 109
BmgT120I GGNCC 1 cut(s) 512
BmiI GGNNCC 3 cut(s) 395, 1043, 1225
BmrFI CCNGG 1 cut(s) 852
BmrI ACTGGG 1 cut(s) 539
BmsI GCATC 3 cut(s) 435, 1129, 1311
BmuI ACTGGG 1 cut(s) 539
BpiI GAAGAC 3 cut(s) 395, 1052, 1234
BpmI CTGGAG 1 cut(s) 933
BpuEI CTTGAG 1 cut(s) 452
BsaJI CCNNGG 5 cut(s) 49, 542, 1012, 1194, 1312
BsaWI WCCGGW 1 cut(s) 437
BsaXI ACNNNNNCTCC 2 cut(s) 90, 120
Bsc4I CCNNNNNNNGG 1 cut(s) 814
Bse118I RCCGGY 2 cut(s) 437, 736
Bse1I ACTGG 3 cut(s) 515, 534, 844
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 1 cut(s) 852
BseDI CCNNGG 5 cut(s) 49, 542, 1012, 1194, 1312
BseLI CCNNNNNNNGG 1 cut(s) 814
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 3 cut(s) 204, 1019, 1201
BseNI ACTGG 3 cut(s) 515, 534, 844
BseXI GCAGC 1 cut(s) 1317
BshFI GGCC 3 cut(s) 514, 792, 855
BshTI ACCGGT 1 cut(s) 437
BsiSI CCGG 2 cut(s) 438, 737
BslFI GGGAC 2 cut(s) 145, 547
BslI CCNNNNNNNGG 1 cut(s) 814
BsmAI GTCTC 4 cut(s) 317, 601, 970, 1152
BsmBI CGTCTC 2 cut(s) 970, 1152
BsmFI GGGAC 2 cut(s) 145, 547
BsmI GAATGC 1 cut(s) 301
BsnI GGCC 3 cut(s) 514, 792, 855
Bsp143I GATC 5 cut(s) 646, 661, 889, 1099, 1281
Bsp19I CCATGG 1 cut(s) 1312
BspANI GGCC 3 cut(s) 514, 792, 855
BspCNI CTCAG 3 cut(s) 205, 1018, 1200
BspLI GGNNCC 3 cut(s) 395, 1043, 1225
BspMI ACCTGC 1 cut(s) 572
BspPI GGATC 1 cut(s) 897
BspTI CTTAAG 2 cut(s) 1088, 1270
BsrDI GCAATG 1 cut(s) 291
BsrFI RCCGGY 2 cut(s) 437, 736
BsrI ACTGG 3 cut(s) 515, 534, 844
BssAI RCCGGY 2 cut(s) 437, 736
BssECI CCNNGG 5 cut(s) 49, 542, 1012, 1194, 1312
BssMI GATC 5 cut(s) 646, 661, 889, 1099, 1281
BssNAI GTATAC 1 cut(s) 776
BssT1I CCWWGG 5 cut(s) 49, 542, 1012, 1194, 1312
Bst1107I GTATAC 1 cut(s) 776
Bst2UI CCWGG 1 cut(s) 852
BstAFI CTTAAG 2 cut(s) 1088, 1270
BstC8I GCNNGC 1 cut(s) 450
BstDEI CTNAG 4 cut(s) 83, 213, 1005, 1187
BstDSI CCRYGG 1 cut(s) 1312
BstHHI GCGC 1 cut(s) 1335
BstKTI GATC 5 cut(s) 649, 664, 892, 1102, 1284
BstMAI GTCTC 4 cut(s) 317, 601, 970, 1152
BstMBI GATC 5 cut(s) 646, 661, 889, 1099, 1281
BstNI CCWGG 1 cut(s) 852
BstSCI CCNGG 1 cut(s) 850
BstV1I GCAGC 1 cut(s) 1317
BstV2I GAAGAC 3 cut(s) 395, 1052, 1234
BstX2I RGATCY 1 cut(s) 889
BstYI RGATCY 1 cut(s) 889
BstZ17I GTATAC 1 cut(s) 776
BsuRI GGCC 3 cut(s) 514, 792, 855
BtgI CCRYGG 1 cut(s) 1312
BtsIMutI CAGTG 1 cut(s) 837
BveI ACCTGC 1 cut(s) 572
Cac8I GCNNGC 1 cut(s) 450
CfoI GCGC 1 cut(s) 1335
Cfr10I RCCGGY 2 cut(s) 437, 736
Cfr13I GGNCC 1 cut(s) 512
Csp6I GTAC 2 cut(s) 679, 754
CspAI ACCGGT 1 cut(s) 437
CviAII CATG 5 cut(s) 153, 453, 653, 767, 1313
CviQI GTAC 2 cut(s) 679, 754
DdeI CTNAG 4 cut(s) 83, 213, 1005, 1187
DpnI GATC 5 cut(s) 648, 663, 891, 1101, 1283
DpnII GATC 5 cut(s) 646, 661, 889, 1099, 1281
DriI GACNNNNNGTC 1 cut(s) 109
EaeI YGGCCR 1 cut(s) 790
Eam1105I GACNNNNNGTC 1 cut(s) 109
Eco130I CCWWGG 5 cut(s) 49, 542, 1012, 1194, 1312
EcoRII CCWGG 1 cut(s) 850
EcoT14I CCWWGG 5 cut(s) 49, 542, 1012, 1194, 1312
ErhI CCWWGG 5 cut(s) 49, 542, 1012, 1194, 1312
Esp3I CGTCTC 2 cut(s) 970, 1152
FaeI CATG 5 cut(s) 156, 456, 656, 770, 1316
FaqI GGGAC 2 cut(s) 145, 547
FatI CATG 5 cut(s) 152, 452, 652, 766, 1312
FbaI TGATCA 2 cut(s) 1099, 1281
FblI GTMKAC 1 cut(s) 775
Fnu4HI GCNGC 1 cut(s) 1331
Fsp4HI GCNGC 1 cut(s) 1331
FspBI CTAG 3 cut(s) 96, 476, 936
GlaI GCGC 1 cut(s) 1334
GluI GCNGC 1 cut(s) 1331
GsuI CTGGAG 1 cut(s) 933
HaeIII GGCC 3 cut(s) 514, 792, 855
HapII CCGG 2 cut(s) 438, 737
HhaI GCGC 1 cut(s) 1335
Hin1II CATG 5 cut(s) 156, 456, 656, 770, 1316
Hin6I GCGC 1 cut(s) 1333
HinP1I GCGC 1 cut(s) 1333
HincII GTYRAC 2 cut(s) 89, 527
HindII GTYRAC 2 cut(s) 89, 527
HinfI GANTC 7 cut(s) 217, 472, 535, 800, 901, 1352, 1361
HpaII CCGG 2 cut(s) 438, 737
HphI GGTGA 3 cut(s) 427, 452, 596
Hpy166II GTNNAC 5 cut(s) 89, 527, 776, 1111, 1293
Hpy188III TCNNGA 7 cut(s) 469, 665, 912, 980, 1103, 1162, 1285
Hpy8I GTNNAC 5 cut(s) 89, 527, 776, 1111, 1293
HpyAV CCTTC 6 cut(s) 191, 250, 977, 1031, 1159, 1213
HpyCH4IV ACGT 2 cut(s) 963, 1145
HpyF3I CTNAG 4 cut(s) 83, 213, 1005, 1187
HpySE526I ACGT 2 cut(s) 963, 1145
Hsp92II CATG 5 cut(s) 156, 456, 656, 770, 1316
HspAI GCGC 1 cut(s) 1333
Ksp22I TGATCA 2 cut(s) 1099, 1281
Kzo9I GATC 5 cut(s) 646, 661, 889, 1099, 1281
LmnI GCTCC 2 cut(s) 1117, 1299
Lsp1109I GCAGC 1 cut(s) 1317
LweI GCATC 3 cut(s) 435, 1129, 1311
MaeI CTAG 3 cut(s) 96, 476, 936
MaeII ACGT 2 cut(s) 963, 1145
MaeIII GTNAC 1 cut(s) 428
MalI GATC 5 cut(s) 648, 663, 891, 1101, 1283
MboI GATC 5 cut(s) 646, 661, 889, 1099, 1281
MboII GAAGA 3 cut(s) 395, 1052, 1234
MfeI CAATTG 1 cut(s) 794
MflI RGATCY 1 cut(s) 889
MlyI GAGTC 3 cut(s) 529, 794, 1370
MnlI CCTC 6 cut(s) 116, 254, 291, 346, 443, 878
MseI TTAA 3 cut(s) 69, 1089, 1271
MslI CAYNNNNRTG 1 cut(s) 657
MspA1I CMGCKG 1 cut(s) 365
MspCI CTTAAG 2 cut(s) 1088, 1270
MspI CCGG 2 cut(s) 438, 737
MspR9I CCNGG 1 cut(s) 852
MunI CAATTG 1 cut(s) 794
Mva1269I GAATGC 1 cut(s) 301
MvaI CCWGG 1 cut(s) 852
NcoI CCATGG 1 cut(s) 1312
NdeII GATC 5 cut(s) 646, 661, 889, 1099, 1281
NlaIII CATG 5 cut(s) 156, 456, 656, 770, 1316
NlaIV GGNNCC 3 cut(s) 395, 1043, 1225
PaqCI CACCTGC 1 cut(s) 572
PctI GAATGC 1 cut(s) 301
PfeI GAWTC 4 cut(s) 217, 472, 901, 1352
PflMI CCANNNNNTGG 1 cut(s) 814
PinAI ACCGGT 1 cut(s) 437
PkrI GCNGC 1 cut(s) 1332
PleI GAGTC 3 cut(s) 529, 794, 1369
PpsI GAGTC 3 cut(s) 529, 794, 1369
Psp6I CCWGG 1 cut(s) 850
PspGI CCWGG 1 cut(s) 850
PspN4I GGNNCC 3 cut(s) 395, 1043, 1225
PspPI GGNCC 1 cut(s) 512
PsuI RGATCY 1 cut(s) 889
PvuII CAGCTG 1 cut(s) 365
RsaI GTAC 2 cut(s) 680, 755
RsaNI GTAC 2 cut(s) 679, 754
RseI CAYNNNNRTG 1 cut(s) 657
SaqAI TTAA 3 cut(s) 69, 1089, 1271
SatI GCNGC 1 cut(s) 1331
Sau3AI GATC 5 cut(s) 646, 661, 889, 1099, 1281
Sau96I GGNCC 1 cut(s) 512
SchI GAGTC 3 cut(s) 529, 794, 1370
ScrFI CCNGG 1 cut(s) 852
SfaNI GCATC 3 cut(s) 435, 1129, 1311
SgrAI CRCCGGYG 2 cut(s) 437, 736
SmiMI CAYNNNNRTG 1 cut(s) 657
SmlI CTYRAG 3 cut(s) 467, 1088, 1270
SmoI CTYRAG 3 cut(s) 467, 1088, 1270
SpeI ACTAGT 1 cut(s) 935
SspMI CTAG 3 cut(s) 96, 476, 936
StyD4I CCNGG 1 cut(s) 850
StyI CCWWGG 5 cut(s) 49, 542, 1012, 1194, 1312
TaiI ACGT 2 cut(s) 966, 1148
TaqI TCGA 4 cut(s) 175, 406, 461, 697
TfiI GAWTC 4 cut(s) 217, 472, 901, 1352
Tru1I TTAA 3 cut(s) 69, 1089, 1271
Tru9I TTAA 3 cut(s) 69, 1089, 1271
TscAI CASTG 1 cut(s) 844
TseI GCWGC 1 cut(s) 1330
TspDTI ATGAA 4 cut(s) 17, 302, 542, 1361
TspGWI ACGGA 1 cut(s) 886
TspRI CASTG 1 cut(s) 844
Van91I CCANNNNNTGG 1 cut(s) 814
Vha464I CTTAAG 2 cut(s) 1088, 1270
XapI RAATTY 4 cut(s) 28, 587, 1125, 1307
XmiI GTMKAC 1 cut(s) 775
XspI CTAG 3 cut(s) 96, 476, 936
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.