MD15G1022200.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0015236
Physical Location & Seq
Forward (+)
1283048 .. 1285216
2169 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1022200.v1.1.491

Sequence Viewer

Length: 1086 bp
ATGGCAGTCTTCAGAGGAACTTTCTTAGGTCTTGTAGTTGTGACATTGGTGGTCTCAGCCACGCTCTCCGCCGCTCACCCAGAAGGGTTCAACTTCGGGTGGGGATCCCGATGGGGAAGTAAACCTAGTACTGATCATCATGGTGGCGGGCATGCTCCGGCGGGTGGGTCTCACGGTCTTTTCCCACAATTCTACCACTCGTCGTGCCCTCAGGTTAACGATATTGTCATCTCGGTGCTACAGCGAGCCATCGGGAAGGACCCCCGGGTGGCAGCCTCTTTGCTAAGGCTTCACTTCCATGACTGCTTTGCTCAGGGTTGTGACGCCTCGGTGCTACTAGACAACAGCACGACAATATTAAGCGAAAAGGGGGCAGGTCCAAACGTGAATTCTCTTAGAGGGTTTGAAGTGATCGATGAGATCAAAGCCGAGCTAGAAGAAGCATGTCCCCGGACTGTGTCATGTGCTGACATTGTCGCTCTTGCTGCTAGGGCATCCACTGTACTAAGCGATGGACCTAATTGGGTGTTGCCACTAGGAAGAAGGGACTCCAAAACTGCAAGTGTAAAAAGCTCAAACAACAACATTCCATCACCAAGATCCAATCTCTCAACCCTAATAACCGCCTTCAAGCGTCAAGGTCTTGATGAAACTGACTTAGTTGCCCTCTCAGGAGGGCATACAATTGGGGTTGCAAAGTGTTCCACGTTCAAGAGGAGGCTGTACAACCAAAACGGGAACGACCAACCGGACTCGACTTTAGAGAGAAGTTACTACTTTGGTCTGAAATCAGTTTGCCCTAGCAGAGGTGGCGACAACAACATCACTCCCTTGGACTTTGCTTCCCCTGCAAGGTTCGACAACACCTACTTCCAGCTTCTACTTATGGGAAAAGGACTTCTCACTTCAGACCAAGTGCTTCTAACTGGAAATGGAAGGAAGGCAGCTGAGCTGGTGAAAACCTATGCAGACAATGAGCGCTTATTCTTTCAGCAGTTTGCTCAGTCCATGGTTAAGATGGGGAACATTAATCCTCTCACTGGATTAAAGGGCGAAGTCCGAAAGAACTGTCGTCGCGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

362

Amino Acids

38.94

Weight (kDa)

9.0

Isoelectric Point (pI)

41.48

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 78 - 325 1.1e-81 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 365
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 1077
AciI CCGC 5 cut(s) 69, 72, 147, 161, 624
AclWI GGATC 3 cut(s) 99, 112, 594
AcsI RAATTY 1 cut(s) 388
AcuI CTGAAG 1 cut(s) 891
AcyI GRCGYC 1 cut(s) 324
AfaI GTAC 3 cut(s) 130, 504, 725
AfeI AGCGCT 1 cut(s) 980
AfiI CCNNNNNNNGG 5 cut(s) 164, 268, 806, 852, 1040
AgsI TTSAA 4 cut(s) 91, 407, 631, 712
AjuI GAANNNNNNNTTGG 2 cut(s) 373, 405
AluBI AGCT 5 cut(s) 433, 573, 877, 947, 952
AluI AGCT 5 cut(s) 433, 573, 877, 947, 952
Alw26I GTCTC 2 cut(s) 58, 174
AlwI GGATC 3 cut(s) 99, 112, 594
Ama87I CYCGRG 1 cut(s) 264
Aor51HI AGCGCT 1 cut(s) 980
ApeKI GCWGC 3 cut(s) 272, 485, 944
ApoI RAATTY 1 cut(s) 388
ArsI GACNNNNNNTTYG 2 cut(s) 1054, 1086
AseI ATTAAT 1 cut(s) 1029
AspLEI GCGC 1 cut(s) 981
AspS9I GGNCC 3 cut(s) 259, 377, 515
AsuC2I CCSGG 3 cut(s) 265, 266, 451
AsuHPI GGTGA 3 cut(s) 68, 585, 967
AvaI CYCGRG 1 cut(s) 264
AvaII GGWCC 3 cut(s) 259, 377, 515
AxyI CCTNAGG 1 cut(s) 210
BaeGI GKGCMC 1 cut(s) 209
BamHI GGATCC 1 cut(s) 104
BbvI GCAGC 3 cut(s) 284, 472, 956
BccI CCATC 5 cut(s) 105, 257, 506, 598, 1012
BclI TGATCA 1 cut(s) 133
BcnI CCSGG 3 cut(s) 265, 266, 451
BcoDI GTCTC 2 cut(s) 58, 174
BfaI CTAG 6 cut(s) 126, 338, 434, 489, 536, 801
BfmI CTRYAG 1 cut(s) 239
BfoI RGCGCY 1 cut(s) 982
BfuAI ACCTGC 1 cut(s) 365
BisI GCNGC 4 cut(s) 72, 273, 486, 945
BlpI GCTNAGC 1 cut(s) 948
BlsI GCNGC 4 cut(s) 73, 274, 487, 946
BmcAI AGTACT 1 cut(s) 130
Bme1390I CCNGG 3 cut(s) 265, 266, 451
Bme18I GGWCC 3 cut(s) 259, 377, 515
BmeT110I CYCGRG 1 cut(s) 264
BmgT120I GGNCC 3 cut(s) 259, 377, 515
BmiI GGNNCC 2 cut(s) 106, 261
BmrFI CCNGG 3 cut(s) 265, 266, 451
BmsI GCATC 1 cut(s) 503
Bpu10I CCTNAGC 2 cut(s) 284, 312
Bpu1102I GCTNAGC 1 cut(s) 948
BpuMI CCSGG 3 cut(s) 265, 266, 451
Bsa29I ATCGAT 1 cut(s) 414
BsaHI GRCGYC 1 cut(s) 324
BsaI GGTCTC 2 cut(s) 58, 174
BsaJI CCNNGG 6 cut(s) 263, 264, 327, 449, 831, 1008
BsaWI WCCGGW 1 cut(s) 748
Bsc4I CCNNNNNNNGG 5 cut(s) 164, 268, 806, 852, 1040
Bse1I ACTGG 2 cut(s) 931, 1045
Bse21I CCTNAGG 1 cut(s) 210
BseCI ATCGAT 1 cut(s) 414
BseDI CCNNGG 6 cut(s) 263, 264, 327, 449, 831, 1008
BseGI GGATG 1 cut(s) 494
BseLI CCNNNNNNNGG 5 cut(s) 164, 268, 806, 852, 1040
BseMII CTCAG 6 cut(s) 69, 224, 326, 684, 939, 1016
BseNI ACTGG 2 cut(s) 931, 1045
BseRI GAGGAG 1 cut(s) 730
BseSI GKGCMC 1 cut(s) 209
BseXI GCAGC 3 cut(s) 284, 472, 956
Bsh1236I CGCG 1 cut(s) 1077
BshVI ATCGAT 1 cut(s) 414
BsiHKCI CYCGRG 1 cut(s) 264
BsiSI CCGG 4 cut(s) 158, 265, 451, 749
BslFI GGGAC 2 cut(s) 432, 560
BslI CCNNNNNNNGG 5 cut(s) 164, 268, 806, 852, 1040
BsmAI GTCTC 2 cut(s) 58, 174
BsmFI GGGAC 2 cut(s) 432, 560
Bso31I GGTCTC 2 cut(s) 58, 174
BsoBI CYCGRG 1 cut(s) 264
Bsp1286I GDGCHC 1 cut(s) 209
Bsp1407I TGTACA 1 cut(s) 723
Bsp143I GATC 5 cut(s) 104, 133, 411, 420, 599
Bsp1720I GCTNAGC 1 cut(s) 948
Bsp19I CCATGG 1 cut(s) 1008
BspACI CCGC 5 cut(s) 69, 72, 147, 161, 624
BspCNI CTCAG 6 cut(s) 68, 223, 325, 683, 940, 1015
BspDI ATCGAT 1 cut(s) 414
BspFNI CGCG 1 cut(s) 1077
BspLI GGNNCC 2 cut(s) 106, 261
BspMI ACCTGC 1 cut(s) 365
BspPI GGATC 3 cut(s) 99, 112, 594
BspTNI GGTCTC 2 cut(s) 58, 174
BsrBI CCGCTC 1 cut(s) 74
BsrGI TGTACA 1 cut(s) 723
BsrI ACTGG 2 cut(s) 931, 1045
BssECI CCNNGG 6 cut(s) 263, 264, 327, 449, 831, 1008
BssMI GATC 5 cut(s) 104, 133, 411, 420, 599
BssNI GRCGYC 1 cut(s) 324
BssT1I CCWWGG 2 cut(s) 831, 1008
Bst4CI ACNGT 4 cut(s) 176, 457, 502, 1070
BstACI GRCGYC 1 cut(s) 324
BstAUI TGTACA 1 cut(s) 723
BstC8I GCNNGC 3 cut(s) 149, 153, 246
BstDSI CCRYGG 1 cut(s) 1008
BstENI CCTNNNNNAGG 1 cut(s) 804
BstF5I GGATG 1 cut(s) 494
BstFNI CGCG 1 cut(s) 1077
BstH2I RGCGCY 1 cut(s) 982
BstHHI GCGC 1 cut(s) 981
BstKTI GATC 5 cut(s) 107, 136, 414, 423, 602
BstMAI GTCTC 2 cut(s) 58, 174
BstMBI GATC 5 cut(s) 104, 133, 411, 420, 599
BstMWI GCNNNNNNNGC 4 cut(s) 485, 491, 810, 848
BstNSI RCATGY 2 cut(s) 155, 447
BstSCI CCNGG 3 cut(s) 263, 264, 449
BstSFI CTRYAG 1 cut(s) 239
BstSLI GKGCMC 1 cut(s) 209
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 3 cut(s) 284, 472, 956
BstX2I RGATCY 2 cut(s) 104, 599
BstYI RGATCY 2 cut(s) 104, 599
Bsu15I ATCGAT 1 cut(s) 414
Bsu36I CCTNAGG 1 cut(s) 210
BsuTUI ATCGAT 1 cut(s) 414
BtgI CCRYGG 1 cut(s) 1008
BtgZI GCGATG 1 cut(s) 525
BtsCI GGATG 1 cut(s) 494
BtsIMutI CAGTG 2 cut(s) 498, 1038
BveI ACCTGC 1 cut(s) 365
Cac8I GCNNGC 3 cut(s) 149, 153, 246
CfoI GCGC 1 cut(s) 981
Cfr13I GGNCC 3 cut(s) 259, 377, 515
Cfr9I CCCGGG 1 cut(s) 264
ClaI ATCGAT 1 cut(s) 414
CseI GACGC 2 cut(s) 332, 623
Csp6I GTAC 3 cut(s) 129, 503, 724
CviAII CATG 6 cut(s) 140, 152, 299, 444, 462, 1009
CviQI GTAC 3 cut(s) 129, 503, 724
DpnI GATC 5 cut(s) 106, 135, 413, 422, 601
DpnII GATC 5 cut(s) 104, 133, 411, 420, 599
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 831, 1008
Eco31I GGTCTC 2 cut(s) 58, 174
Eco47I GGWCC 3 cut(s) 259, 377, 515
Eco47III AGCGCT 1 cut(s) 980
Eco57I CTGAAG 1 cut(s) 891
Eco81I CCTNAGG 1 cut(s) 210
Eco88I CYCGRG 1 cut(s) 264
EcoNI CCTNNNNNAGG 1 cut(s) 804
EcoO109I RGGNCCY 1 cut(s) 259
EcoRI GAATTC 1 cut(s) 388
EcoT14I CCWWGG 2 cut(s) 831, 1008
ErhI CCWWGG 2 cut(s) 831, 1008
FaeI CATG 6 cut(s) 143, 155, 302, 447, 465, 1012
FaiI YATR 9 cut(s) 141, 153, 300, 445, 463, 681, 887, 966, 1010
FaqI GGGAC 2 cut(s) 432, 560
FatI CATG 6 cut(s) 139, 151, 298, 443, 461, 1008
FauI CCCGC 2 cut(s) 140, 154
FbaI TGATCA 1 cut(s) 133
Fnu4HI GCNGC 4 cut(s) 72, 273, 486, 945
FokI GGATG 1 cut(s) 481
Fsp4HI GCNGC 4 cut(s) 72, 273, 486, 945
FspBI CTAG 6 cut(s) 126, 338, 434, 489, 536, 801
GlaI GCGC 1 cut(s) 980
GluI GCNGC 4 cut(s) 72, 273, 486, 945
HaeII RGCGCY 1 cut(s) 982
HapII CCGG 4 cut(s) 158, 265, 451, 749
HgaI GACGC 2 cut(s) 332, 623
HhaI GCGC 1 cut(s) 981
Hin1I GRCGYC 1 cut(s) 324
Hin1II CATG 6 cut(s) 143, 155, 302, 447, 465, 1012
Hin6I GCGC 1 cut(s) 979
HinP1I GCGC 1 cut(s) 979
HincII GTYRAC 1 cut(s) 217
HindII GTYRAC 1 cut(s) 217
HinfI GANTC 2 cut(s) 548, 752
HpaI GTTAAC 1 cut(s) 217
HpaII CCGG 4 cut(s) 158, 265, 451, 749
HphI GGTGA 3 cut(s) 68, 585, 967
Hpy166II GTNNAC 2 cut(s) 122, 217
Hpy188I TCNGA 4 cut(s) 14, 786, 910, 1061
Hpy188III TCNNGA 5 cut(s) 108, 253, 644, 672, 712
Hpy8I GTNNAC 2 cut(s) 122, 217
Hpy99I CGWCG 2 cut(s) 205, 1077
HpyAV CCTTC 6 cut(s) 77, 250, 537, 637, 930, 934
HpyCH4III ACNGT 4 cut(s) 176, 457, 502, 1070
HpyCH4IV ACGT 2 cut(s) 384, 707
HpyCH4V TGCA 4 cut(s) 560, 695, 851, 968
HpyF10VI GCNNNNNNNGC 4 cut(s) 485, 491, 810, 848
HpySE526I ACGT 2 cut(s) 384, 707
Hsp92I GRCGYC 1 cut(s) 324
Hsp92II CATG 6 cut(s) 143, 155, 302, 447, 465, 1012
HspAI GCGC 1 cut(s) 979
Ksp22I TGATCA 1 cut(s) 133
KspAI GTTAAC 1 cut(s) 217
Kzo9I GATC 5 cut(s) 104, 133, 411, 420, 599
LmnI GCTCC 1 cut(s) 160
Lsp1109I GCAGC 3 cut(s) 284, 472, 956
LweI GCATC 1 cut(s) 503
MaeI CTAG 6 cut(s) 126, 338, 434, 489, 536, 801
MaeII ACGT 2 cut(s) 384, 707
MaeIII GTNAC 3 cut(s) 40, 320, 770
MalI GATC 5 cut(s) 106, 135, 413, 422, 601
MbiI CCGCTC 1 cut(s) 74
MboI GATC 5 cut(s) 104, 133, 411, 420, 599
MboII GAAGA 2 cut(s) 449, 552
MfeI CAATTG 1 cut(s) 684
MflI RGATCY 2 cut(s) 104, 599
MhlI GDGCHC 1 cut(s) 209
MluCI AATT 5 cut(s) 188, 388, 520, 684, 1081
MlyI GAGTC 2 cut(s) 542, 746
MseI TTAA 7 cut(s) 216, 359, 1014, 1029, 1046, 1080, 1084
MslI CAYNNNNRTG 3 cut(s) 141, 233, 297
MspA1I CMGCKG 1 cut(s) 947
MspI CCGG 4 cut(s) 158, 265, 451, 749
MspR9I CCNGG 3 cut(s) 265, 266, 451
MunI CAATTG 1 cut(s) 684
MvnI CGCG 1 cut(s) 1077
MwoI GCNNNNNNNGC 4 cut(s) 485, 491, 810, 848
NciI CCSGG 3 cut(s) 265, 266, 451
NcoI CCATGG 1 cut(s) 1008
NdeII GATC 5 cut(s) 104, 133, 411, 420, 599
NlaIII CATG 6 cut(s) 143, 155, 302, 447, 465, 1012
NlaIV GGNNCC 2 cut(s) 106, 261
NmeAIII GCCGAG 1 cut(s) 454
NmuCI GTSAC 2 cut(s) 40, 320
NspI RCATGY 2 cut(s) 155, 447
PacI TTAATTAA 1 cut(s) 1084
PaeI GCATGC 1 cut(s) 155
PflFI GACNNNGTC 2 cut(s) 457, 473
PkrI GCNGC 4 cut(s) 73, 274, 487, 946
PleI GAGTC 2 cut(s) 542, 746
PpsI GAGTC 2 cut(s) 542, 746
PpuMI RGGWCCY 1 cut(s) 259
PshBI ATTAAT 1 cut(s) 1029
Psp5II RGGWCCY 1 cut(s) 259
PspN4I GGNNCC 2 cut(s) 106, 261
PspPI GGNCC 3 cut(s) 259, 377, 515
PspPPI RGGWCCY 1 cut(s) 259
PsuI RGATCY 2 cut(s) 104, 599
PsyI GACNNNGTC 2 cut(s) 457, 473
PvuII CAGCTG 1 cut(s) 947
RsaI GTAC 3 cut(s) 130, 504, 725
RsaNI GTAC 3 cut(s) 129, 503, 724
RseI CAYNNNNRTG 3 cut(s) 141, 233, 297
SaqAI TTAA 7 cut(s) 216, 359, 1014, 1029, 1046, 1080, 1084
SatI GCNGC 4 cut(s) 72, 273, 486, 945
Sau3AI GATC 5 cut(s) 104, 133, 411, 420, 599
Sau96I GGNCC 3 cut(s) 259, 377, 515
ScaI AGTACT 1 cut(s) 130
SchI GAGTC 2 cut(s) 542, 746
ScrFI CCNGG 3 cut(s) 265, 266, 451
SduI GDGCHC 1 cut(s) 209
SfaNI GCATC 1 cut(s) 503
SfcI CTRYAG 1 cut(s) 239
SinI GGWCC 3 cut(s) 259, 377, 515
SmaI CCCGGG 1 cut(s) 266
SmiMI CAYNNNNRTG 3 cut(s) 141, 233, 297
SphI GCATGC 1 cut(s) 155
Sse9I AATT 5 cut(s) 188, 388, 520, 684, 1081
SsiI CCGC 5 cut(s) 69, 72, 147, 161, 624
SspI AATATT 1 cut(s) 357
SspMI CTAG 6 cut(s) 126, 338, 434, 489, 536, 801
StyD4I CCNGG 3 cut(s) 263, 264, 449
StyI CCWWGG 2 cut(s) 831, 1008
TaaI ACNGT 4 cut(s) 176, 457, 502, 1070
TaiI ACGT 2 cut(s) 387, 710
TaqI TCGA 3 cut(s) 414, 755, 858
TasI AATT 5 cut(s) 188, 388, 520, 684, 1081
TatI WGTACW 3 cut(s) 128, 502, 723
TauI GCSGC 1 cut(s) 74
Tru1I TTAA 7 cut(s) 216, 359, 1014, 1029, 1046, 1080, 1084
Tru9I TTAA 7 cut(s) 216, 359, 1014, 1029, 1046, 1080, 1084
TscAI CASTG 2 cut(s) 505, 1045
TseFI GTSAC 2 cut(s) 40, 320
TseI GCWGC 3 cut(s) 272, 485, 944
Tsp45I GTSAC 2 cut(s) 40, 320
TspDTI ATGAA 1 cut(s) 663
TspMI CCCGGG 1 cut(s) 264
TspRI CASTG 2 cut(s) 505, 1045
Tth111I GACNNNGTC 2 cut(s) 457, 473
VpaK11BI GGWCC 3 cut(s) 259, 377, 515
VspI ATTAAT 1 cut(s) 1029
XagI CCTNNNNNAGG 1 cut(s) 804
XapI RAATTY 1 cut(s) 388
XceI RCATGY 2 cut(s) 155, 447
XcmI CCANNNNNNNNNTGG 1 cut(s) 1015
XmaI CCCGGG 1 cut(s) 264
XspI CTAG 6 cut(s) 126, 338, 434, 489, 536, 801
ZrmI AGTACT 1 cut(s) 130
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.