MD08G1027800.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr08
OG0015236
Physical Location & Seq
Reverse (-)
2023966 .. 2025791
1826 bp
Loading structure...
UTR
Exon/CDS
Intron
MD08G1027800.v1.1.491

Sequence Viewer

Length: 969 bp
ATGGCAGTCTTCAGAGGAATTTTCTTAGGTCTTGTAGTTGTGACACTGGTGTTCTCAGCCACGCTCTCCGCCGCTCACCTGGATGGTTTCAACTTTGGGTCGGGTGGGTCTCAGACTCACGATCTTTTCCCACAATTCTATCAATCGTCGTGCCCTCAGGTCAACGACATTGTCATCTCCGTATTACAGCGGGCCATCGAGAAGAATCCCCGGGTGGCAGCCTTTCTGATAAGGCTTCACTTCCATGATTGCTTTGCTCAGGGCTGTGACGCCTCGGTGCTACTAGACAACAGCACGACTAGAATAAGCGAAAAGGGGGCAAAACCAAACGTGAATTCTCTGAGAGGATTTGAAGTAATCGACGAGATGAAGGCCAAGCTAGAAGAAGCATGTCCCCTGACTGTGTCATGTGCTGACATTGTTGCTCTTGCTGCTAGGGGATCCACTGTACTAAGCGGTGGACCTGATTGGGTGTTGCCACTAGGAAGAAGGGACTCCAAAACTGCAAGTTTTGAAAGCTCAAACAGAGACATTCCAGCACCACTACCCGATCTCTCAGCCCTAATAACCACCTTCGAGCGTCAGGGTCTTGATGAAACTGACCTAGTTGCCCTCTCAGGAGGGCATACAATTGGGTTCGCTAAGTGTTCGTTCGTCAGGCAGACTCGGAAATCAGTTTGCCCAAGAAGAGGTGGCGACAACACAGCTGCTCCCTTGGACTTTGTTTCCCCTACAAGGTTCGACAACAGCTACTTCAAGCTTATACTTGGGGGACATGGACTTCTCCCTTCAGACCAAGTACTTCTTACTGGGAACAGAAGGCAGGCAGCTGAGCTGGTGAAAACCTATGCTGCTAATGAGAGCTTATTCTTTCAGCAGTTTGCTAAGTCCATGGTTAAGATGGGGAACATTAGTCCTCTTACTGGGTTCGAGGGACAAGTCCGAAAGAATTGTCGTCGCGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

323

Amino Acids

34.92

Weight (kDa)

8.63

Isoelectric Point (pI)

41.19

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 60 - 286 2.5e-71 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 74
AccII CGCG 1 cut(s) 960
AciI CCGC 4 cut(s) 69, 72, 190, 456
AclWI GGATC 2 cut(s) 435, 448
AcsI RAATTY 2 cut(s) 18, 334
AcuI CTGAAG 1 cut(s) 774
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 450, 801
AfiI CCNNNNNNNGG 3 cut(s) 689, 735, 923
AgsI TTSAA 4 cut(s) 91, 353, 515, 757
AjnI CCWGG 1 cut(s) 78
AjuI GAANNNNNNNTTGG 2 cut(s) 319, 351
AluBI AGCT 8 cut(s) 379, 519, 707, 750, 760, 830, 835, 864
AluI AGCT 8 cut(s) 379, 519, 707, 750, 760, 830, 835, 864
Alw26I GTCTC 2 cut(s) 114, 522
AlwI GGATC 2 cut(s) 435, 448
Ama87I CYCGRG 1 cut(s) 210
AoxI GGCC 2 cut(s) 192, 372
ApeKI GCWGC 5 cut(s) 218, 431, 707, 827, 851
ApoI RAATTY 2 cut(s) 18, 334
ArsI GACNNNNNNTTYG 2 cut(s) 937, 969
AspS9I GGNCC 2 cut(s) 192, 461
AsuC2I CCSGG 2 cut(s) 211, 212
AsuHPI GGTGA 2 cut(s) 68, 850
AvaI CYCGRG 1 cut(s) 210
AvaII GGWCC 1 cut(s) 461
AxyI CCTNAGG 1 cut(s) 156
BaeGI GKGCMC 1 cut(s) 155
BamHI GGATCC 1 cut(s) 440
BbvI GCAGC 5 cut(s) 230, 418, 694, 838, 839
BccI CCATC 3 cut(s) 77, 203, 895
BciT130I CCWGG 1 cut(s) 80
BcnI CCSGG 2 cut(s) 211, 212
BcoDI GTCTC 2 cut(s) 114, 522
BfaI CTAG 6 cut(s) 284, 300, 380, 435, 482, 605
BisI GCNGC 6 cut(s) 72, 219, 432, 708, 828, 852
BlpI GCTNAGC 1 cut(s) 831
BlsI GCNGC 6 cut(s) 73, 220, 433, 709, 829, 853
BmcAI AGTACT 1 cut(s) 801
Bme1390I CCNGG 3 cut(s) 80, 211, 212
Bme18I GGWCC 1 cut(s) 461
BmeT110I CYCGRG 1 cut(s) 210
BmgT120I GGNCC 2 cut(s) 192, 461
BmiI GGNNCC 1 cut(s) 442
BmrFI CCNGG 3 cut(s) 80, 211, 212
BmrI ACTGGG 2 cut(s) 819, 933
BmuI ACTGGG 2 cut(s) 819, 933
Bpu10I CCTNAGC 1 cut(s) 258
Bpu1102I GCTNAGC 1 cut(s) 831
BpuMI CCSGG 2 cut(s) 211, 212
BsaHI GRCGYC 1 cut(s) 270
BsaI GGTCTC 1 cut(s) 114
BsaJI CCNNGG 5 cut(s) 209, 210, 273, 714, 891
BsaXI ACNNNNNCTCC 2 cut(s) 694, 724
Bsc4I CCNNNNNNNGG 3 cut(s) 689, 735, 923
Bse1I ACTGG 3 cut(s) 51, 814, 928
Bse21I CCTNAGG 1 cut(s) 156
BseBI CCWGG 1 cut(s) 80
BseDI CCNNGG 5 cut(s) 209, 210, 273, 714, 891
BseGI GGATG 1 cut(s) 88
BseLI CCNNNNNNNGG 3 cut(s) 689, 735, 923
BseMII CTCAG 8 cut(s) 69, 125, 170, 272, 332, 570, 630, 822
BseNI ACTGG 3 cut(s) 51, 814, 928
BseSI GKGCMC 1 cut(s) 155
BseXI GCAGC 5 cut(s) 230, 418, 694, 838, 839
Bsh1236I CGCG 1 cut(s) 960
BshFI GGCC 2 cut(s) 194, 374
BsiHKCI CYCGRG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 211
BslFI GGGAC 4 cut(s) 378, 506, 786, 948
BslI CCNNNNNNNGG 3 cut(s) 689, 735, 923
BsmAI GTCTC 2 cut(s) 114, 522
BsmFI GGGAC 4 cut(s) 378, 506, 786, 948
BsnI GGCC 2 cut(s) 194, 374
Bso31I GGTCTC 1 cut(s) 114
BsoBI CYCGRG 1 cut(s) 210
Bsp1286I GDGCHC 1 cut(s) 155
Bsp143I GATC 3 cut(s) 121, 440, 550
Bsp1720I GCTNAGC 1 cut(s) 831
Bsp19I CCATGG 1 cut(s) 891
BspACI CCGC 4 cut(s) 69, 72, 190, 456
BspANI GGCC 2 cut(s) 194, 374
BspCNI CTCAG 8 cut(s) 68, 124, 169, 271, 333, 569, 629, 823
BspFNI CGCG 1 cut(s) 960
BspLI GGNNCC 1 cut(s) 442
BspPI GGATC 2 cut(s) 435, 448
BspTNI GGTCTC 1 cut(s) 114
BsrBI CCGCTC 1 cut(s) 74
BsrI ACTGG 3 cut(s) 51, 814, 928
BssECI CCNNGG 5 cut(s) 209, 210, 273, 714, 891
BssMI GATC 3 cut(s) 121, 440, 550
BssNI GRCGYC 1 cut(s) 270
BssT1I CCWWGG 2 cut(s) 714, 891
Bst2UI CCWGG 1 cut(s) 80
Bst4CI ACNGT 2 cut(s) 403, 448
Bst6I CTCTTC 1 cut(s) 682
BstACI GRCGYC 1 cut(s) 270
BstC8I GCNNGC 2 cut(s) 192, 825
BstDSI CCRYGG 1 cut(s) 891
BstF5I GGATG 1 cut(s) 88
BstFNI CGCG 1 cut(s) 960
BstKTI GATC 3 cut(s) 124, 443, 553
BstMAI GTCTC 2 cut(s) 114, 522
BstMBI GATC 3 cut(s) 121, 440, 550
BstMWI GCNNNNNNNGC 1 cut(s) 431
BstNI CCWGG 1 cut(s) 80
BstNSI RCATGY 1 cut(s) 393
BstSCI CCNGG 3 cut(s) 78, 209, 210
BstSLI GKGCMC 1 cut(s) 155
BstUI CGCG 1 cut(s) 960
BstV1I GCAGC 5 cut(s) 230, 418, 694, 838, 839
BstX2I RGATCY 1 cut(s) 440
BstYI RGATCY 1 cut(s) 440
Bsu36I CCTNAGG 1 cut(s) 156
BsuRI GGCC 2 cut(s) 194, 374
BtgI CCRYGG 1 cut(s) 891
BtsCI GGATG 1 cut(s) 88
BtsIMutI CAGTG 2 cut(s) 44, 444
Cac8I GCNNGC 2 cut(s) 192, 825
Cfr13I GGNCC 2 cut(s) 192, 461
Cfr9I CCCGGG 1 cut(s) 210
CseI GACGC 2 cut(s) 278, 569
Csp6I GTAC 2 cut(s) 449, 800
CviAII CATG 5 cut(s) 245, 390, 408, 776, 892
CviQI GTAC 2 cut(s) 449, 800
DpnI GATC 3 cut(s) 123, 442, 552
DpnII GATC 3 cut(s) 121, 440, 550
Eam1104I CTCTTC 1 cut(s) 682
EarI CTCTTC 1 cut(s) 682
EciI GGCGGA 1 cut(s) 58
Eco130I CCWWGG 2 cut(s) 714, 891
Eco31I GGTCTC 1 cut(s) 114
Eco47I GGWCC 1 cut(s) 461
Eco57I CTGAAG 1 cut(s) 774
Eco81I CCTNAGG 1 cut(s) 156
Eco88I CYCGRG 1 cut(s) 210
EcoRI GAATTC 1 cut(s) 334
EcoRII CCWGG 1 cut(s) 78
EcoT14I CCWWGG 2 cut(s) 714, 891
ErhI CCWWGG 2 cut(s) 714, 891
FaeI CATG 5 cut(s) 248, 393, 411, 779, 895
FaiI YATR 8 cut(s) 246, 391, 409, 627, 764, 777, 849, 893
FalI AAGNNNNNCTT 2 cut(s) 789, 821
FaqI GGGAC 4 cut(s) 378, 506, 786, 948
FatI CATG 5 cut(s) 244, 389, 407, 775, 891
FauI CCCGC 1 cut(s) 183
Fnu4HI GCNGC 6 cut(s) 72, 219, 432, 708, 828, 852
FokI GGATG 1 cut(s) 95
Fsp4HI GCNGC 6 cut(s) 72, 219, 432, 708, 828, 852
FspBI CTAG 6 cut(s) 284, 300, 380, 435, 482, 605
GluI GCNGC 6 cut(s) 72, 219, 432, 708, 828, 852
HaeIII GGCC 2 cut(s) 194, 374
HapII CCGG 1 cut(s) 211
HgaI GACGC 2 cut(s) 278, 569
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 5 cut(s) 248, 393, 411, 779, 895
HincII GTYRAC 1 cut(s) 163
HindII GTYRAC 1 cut(s) 163
HindIII AAGCTT 1 cut(s) 758
HinfI GANTC 4 cut(s) 115, 205, 494, 664
HpaII CCGG 1 cut(s) 211
HphI GGTGA 2 cut(s) 68, 850
Hpy166II GTNNAC 2 cut(s) 163, 461
Hpy188I TCNGA 7 cut(s) 14, 114, 228, 342, 669, 793, 944
Hpy188III TCNNGA 4 cut(s) 119, 199, 590, 618
Hpy8I GTNNAC 2 cut(s) 163, 461
Hpy99I CGWCG 3 cut(s) 151, 365, 960
HpyAV CCTTC 5 cut(s) 364, 483, 583, 798, 813
HpyCH4III ACNGT 2 cut(s) 403, 448
HpyCH4IV ACGT 1 cut(s) 330
HpyCH4V TGCA 1 cut(s) 506
HpyF10VI GCNNNNNNNGC 1 cut(s) 431
HpySE526I ACGT 1 cut(s) 330
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 5 cut(s) 248, 393, 411, 779, 895
Kzo9I GATC 3 cut(s) 121, 440, 550
LmnI GCTCC 1 cut(s) 715
Lsp1109I GCAGC 5 cut(s) 230, 418, 694, 838, 839
MaeI CTAG 6 cut(s) 284, 300, 380, 435, 482, 605
MaeII ACGT 1 cut(s) 330
MaeIII GTNAC 2 cut(s) 40, 266
MalI GATC 3 cut(s) 123, 442, 552
MbiI CCGCTC 1 cut(s) 74
MboI GATC 3 cut(s) 121, 440, 550
MboII GAAGA 4 cut(s) 214, 395, 498, 699
MfeI CAATTG 1 cut(s) 630
MflI RGATCY 1 cut(s) 440
MhlI GDGCHC 1 cut(s) 155
MluCI AATT 6 cut(s) 18, 134, 334, 630, 949, 964
MlyI GAGTC 3 cut(s) 109, 488, 658
MnlI CCTC 9 cut(s) 8, 165, 283, 338, 614, 623, 683, 925, 927
MseI TTAA 3 cut(s) 897, 963, 967
MslI CAYNNNNRTG 2 cut(s) 81, 243
MspA1I CMGCKG 3 cut(s) 190, 707, 830
MspI CCGG 1 cut(s) 211
MspR9I CCNGG 3 cut(s) 80, 211, 212
MunI CAATTG 1 cut(s) 630
MvaI CCWGG 1 cut(s) 80
MvnI CGCG 1 cut(s) 960
MwoI GCNNNNNNNGC 1 cut(s) 431
NciI CCSGG 2 cut(s) 211, 212
NcoI CCATGG 1 cut(s) 891
NdeII GATC 3 cut(s) 121, 440, 550
NlaIII CATG 5 cut(s) 248, 393, 411, 779, 895
NlaIV GGNNCC 1 cut(s) 442
NmuCI GTSAC 2 cut(s) 40, 266
NspI RCATGY 1 cut(s) 393
PacI TTAATTAA 1 cut(s) 967
PfeI GAWTC 1 cut(s) 205
PflFI GACNNNGTC 2 cut(s) 170, 403
PkrI GCNGC 6 cut(s) 73, 220, 433, 709, 829, 853
PleI GAGTC 3 cut(s) 109, 488, 658
PpsI GAGTC 3 cut(s) 109, 488, 658
Psp6I CCWGG 1 cut(s) 78
PspGI CCWGG 1 cut(s) 78
PspN4I GGNNCC 1 cut(s) 442
PspPI GGNCC 2 cut(s) 192, 461
PsuI RGATCY 1 cut(s) 440
PsyI GACNNNGTC 2 cut(s) 170, 403
PvuII CAGCTG 2 cut(s) 707, 830
RsaI GTAC 2 cut(s) 450, 801
RsaNI GTAC 2 cut(s) 449, 800
RseI CAYNNNNRTG 2 cut(s) 81, 243
SaqAI TTAA 3 cut(s) 897, 963, 967
SatI GCNGC 6 cut(s) 72, 219, 432, 708, 828, 852
Sau3AI GATC 3 cut(s) 121, 440, 550
Sau96I GGNCC 2 cut(s) 192, 461
ScaI AGTACT 1 cut(s) 801
SchI GAGTC 3 cut(s) 109, 488, 658
ScrFI CCNGG 3 cut(s) 80, 211, 212
SduI GDGCHC 1 cut(s) 155
SinI GGWCC 1 cut(s) 461
SmaI CCCGGG 1 cut(s) 212
SmiMI CAYNNNNRTG 2 cut(s) 81, 243
Sse9I AATT 6 cut(s) 18, 134, 334, 630, 949, 964
SsiI CCGC 4 cut(s) 69, 72, 190, 456
SspMI CTAG 6 cut(s) 284, 300, 380, 435, 482, 605
StyD4I CCNGG 3 cut(s) 78, 209, 210
StyI CCWWGG 2 cut(s) 714, 891
TaaI ACNGT 2 cut(s) 403, 448
TaiI ACGT 1 cut(s) 333
TaqI TCGA 5 cut(s) 198, 360, 576, 741, 930
TasI AATT 6 cut(s) 18, 134, 334, 630, 949, 964
TatI WGTACW 2 cut(s) 448, 799
TauI GCSGC 1 cut(s) 74
TfiI GAWTC 1 cut(s) 205
Tru1I TTAA 3 cut(s) 897, 963, 967
Tru9I TTAA 3 cut(s) 897, 963, 967
TscAI CASTG 2 cut(s) 51, 451
TseFI GTSAC 2 cut(s) 40, 266
TseI GCWGC 5 cut(s) 218, 431, 707, 827, 851
Tsp45I GTSAC 2 cut(s) 40, 266
TspDTI ATGAA 2 cut(s) 383, 609
TspGWI ACGGA 1 cut(s) 169
TspMI CCCGGG 1 cut(s) 210
TspRI CASTG 2 cut(s) 51, 451
Tth111I GACNNNGTC 2 cut(s) 170, 403
VpaK11BI GGWCC 1 cut(s) 461
XapI RAATTY 2 cut(s) 18, 334
XceI RCATGY 1 cut(s) 393
XcmI CCANNNNNNNNNTGG 1 cut(s) 898
XmaI CCCGGG 1 cut(s) 210
XspI CTAG 6 cut(s) 284, 300, 380, 435, 482, 605
ZrmI AGTACT 1 cut(s) 801
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.