MD04G1211800.v1.1

Belongs to the peroxidase family. Classical plant (class III) peroxidase subfamily

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr04
OG0015236
Physical Location & Seq
Forward (+)
29623037 .. 29624583
1547 bp
Loading structure...
UTR
Exon/CDS
Intron
MD04G1211800.v1.1.491

Sequence Viewer

Length: 918 bp
ATGCTAACAGTCTCAGCCATGATCTCCGCTGCTCACCTGGAGGGTTCCAACTTTGGGTCGAGTGAATCTCACGGTCTTTTCCCACAATTCTATCAGTCGTCGTGCCCTCCGGTTAATAACATTGTCATCTCCGTGTTACAGCAGGCCATCGAGAAGGATCCCCGGGTGGCAGCCTCTTTGATAAGGCTTCACTTCCATGATTGCTTTGCTCAGGGTTGTGACGCCTCGGTGCTACTAGACAACAGTACGACAATACGGCGCGAAAAAGGGGCAAAACAACGTGAATTCTCTAGAGGGTTTGAAGTGATCGATGAGATCAAGGCCAAGCTAGAAGAAGCATGTCCCCTGACTGTGTCATGCGCTGACATTGTCGCTCTTGCTGCTAGGGGATCCACTGTACTAAGCGGTGGACCTGATTGGGTGTTGCCACTAGGAAGAAGGGACTCCAAAACTGCAAGCGTGGAAATCTCTGAGAGAAACATTCCAGCATCGAAACCCGATCTCTCATCCCTAACAGCCGGCTTCGAGCGACAAGGTCTTGAAGAAACTGACCTAGTTGCTCTCTCAGGAGGGCATACAATTGGCTTCGCAAAGTGTTTGTTCGTCAGGCAGACTCGGAAATCAGTTTGCCCTAGAAGAGATGGCGACAACACACCTGCTCCCTTGGACTTTGTTTCCCCTACAAGGTTCGACAACAGCTACTTCAAGCTTATACTTGGGGGAAATGGACTACTCCCTTCAGACCAAGTGCTTCTGACTGGGAATGGAAGGCAAGCAGCTGAGCTGGTGAAAACCTATGCAGCTAATGAGAGCTTATTCTTTCAGCAGTTTGCCAAGTCCATGGTTAAGATGGGGAACATTAATCCTCTCACTGGATTAAAGGGACAAGTCCGGAAGAATTGTCGCCGCGTTAATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00940 ko01100 ko01110 map00940 map01100 map01110
Pfam Domains
Protein Families
peroxidase

Protein Analysis

306

Amino Acids

33.08

Weight (kDa)

8.61

Isoelectric Point (pI)

47.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
peroxidase PF00141 44 - 269 1e-67 Peroxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0015236)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G44970
fragaria_vesca FvH4_2g39290
malus_domestica MD04G1211800.v1.1 MD08G1027800.v1.1 MD15G1022200.v1.1
prunus_persica Prupe.1G374000_v2.0.a1
pyrus_communis pycom04g18780 pycom08g01970
rosa_chinensis RchiOBHm_Chr6g0301711
rosa_laevigata RLG00000011229
rosa_multiflora Rmu_sc0034934.1_g000002
rosa_roxburghii Rroxscaffold_7G00166490
rosa_rugosa Rorug06G0308300
rosa_samantha Rh6CG434100 Rh6DG421000
rosa_wichuraiana Rw6G036420

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 664
Acc36I ACCTGC 1 cut(s) 664
AccII CGCG 2 cut(s) 261, 909
AccIII TCCGGA 1 cut(s) 891
AciI CCGC 3 cut(s) 27, 405, 907
AclWI GGATC 4 cut(s) 152, 165, 384, 397
AcsI RAATTY 1 cut(s) 284
AcuI CTGAAG 1 cut(s) 723
AcyI GRCGYC 1 cut(s) 222
AfaI GTAC 2 cut(s) 247, 399
AfiI CCNNNNNNNGG 3 cut(s) 54, 684, 872
AgsI TTSAA 3 cut(s) 302, 542, 706
AjnI CCWGG 1 cut(s) 36
AluBI AGCT 7 cut(s) 328, 699, 709, 779, 784, 803, 813
AluI AGCT 7 cut(s) 328, 699, 709, 779, 784, 803, 813
Alw26I GTCTC 1 cut(s) 16
AlwI GGATC 4 cut(s) 152, 165, 384, 397
Ama87I CYCGRG 1 cut(s) 162
Aor13HI TCCGGA 1 cut(s) 891
AoxI GGCC 2 cut(s) 144, 321
ApeKI GCWGC 5 cut(s) 29, 170, 380, 776, 800
ApoI RAATTY 1 cut(s) 284
AseI ATTAAT 1 cut(s) 861
AspLEI GCGC 2 cut(s) 261, 362
AspS9I GGNCC 1 cut(s) 410
AsuC2I CCSGG 2 cut(s) 163, 164
AsuHPI GGTGA 2 cut(s) 26, 799
AvaI CYCGRG 1 cut(s) 162
AvaII GGWCC 1 cut(s) 410
BaeGI GKGCMC 1 cut(s) 107
BamHI GGATCC 2 cut(s) 157, 389
BbvI GCAGC 5 cut(s) 16, 182, 367, 788, 812
BccI CCATC 3 cut(s) 155, 635, 844
BceAI ACGGC 1 cut(s) 272
BciT130I CCWGG 1 cut(s) 38
BcnI CCSGG 2 cut(s) 163, 164
BcoDI GTCTC 1 cut(s) 16
BfaI CTAG 7 cut(s) 236, 291, 329, 384, 431, 554, 633
BfuAI ACCTGC 1 cut(s) 664
BisI GCNGC 6 cut(s) 30, 171, 381, 777, 801, 907
BlpI GCTNAGC 1 cut(s) 780
BlsI GCNGC 6 cut(s) 31, 172, 382, 778, 802, 908
Bme1390I CCNGG 3 cut(s) 38, 163, 164
Bme18I GGWCC 1 cut(s) 410
BmeT110I CYCGRG 1 cut(s) 162
BmgT120I GGNCC 1 cut(s) 410
BmiI GGNNCC 3 cut(s) 46, 159, 391
BmrFI CCNGG 3 cut(s) 38, 163, 164
BmrI ACTGGG 1 cut(s) 768
BmsI GCATC 1 cut(s) 497
BmuI ACTGGG 1 cut(s) 768
BplI GAGNNNNNCTC 2 cut(s) 52, 84
BpmI CTGGAG 1 cut(s) 59
Bpu10I CCTNAGC 1 cut(s) 210
Bpu1102I GCTNAGC 1 cut(s) 780
BpuMI CCSGG 2 cut(s) 163, 164
Bsa29I ATCGAT 1 cut(s) 309
BsaHI GRCGYC 1 cut(s) 222
BsaJI CCNNGG 5 cut(s) 161, 162, 225, 663, 840
BsaWI WCCGGW 2 cut(s) 109, 891
BsaXI ACNNNNNCTCC 2 cut(s) 643, 673
Bsc4I CCNNNNNNNGG 3 cut(s) 54, 684, 872
Bse118I RCCGGY 1 cut(s) 518
Bse1I ACTGG 2 cut(s) 763, 877
BseAI TCCGGA 1 cut(s) 891
BseBI CCWGG 1 cut(s) 38
BseCI ATCGAT 1 cut(s) 309
BseDI CCNNGG 5 cut(s) 161, 162, 225, 663, 840
BseGI GGATG 1 cut(s) 506
BseLI CCNNNNNNNGG 3 cut(s) 54, 684, 872
BseMII CTCAG 5 cut(s) 27, 224, 462, 579, 771
BseNI ACTGG 2 cut(s) 763, 877
BseSI GKGCMC 1 cut(s) 107
BseXI GCAGC 5 cut(s) 16, 182, 367, 788, 812
Bsh1236I CGCG 2 cut(s) 261, 909
BshFI GGCC 2 cut(s) 146, 323
BshVI ATCGAT 1 cut(s) 309
BsiHKCI CYCGRG 1 cut(s) 162
BsiSI CCGG 4 cut(s) 110, 163, 519, 892
BslFI GGGAC 3 cut(s) 327, 455, 897
BslI CCNNNNNNNGG 3 cut(s) 54, 684, 872
BsmAI GTCTC 1 cut(s) 16
BsmFI GGGAC 3 cut(s) 327, 455, 897
BsnI GGCC 2 cut(s) 146, 323
BsoBI CYCGRG 1 cut(s) 162
Bsp1286I GDGCHC 1 cut(s) 107
Bsp13I TCCGGA 1 cut(s) 891
Bsp143I GATC 6 cut(s) 21, 157, 306, 315, 389, 499
Bsp1720I GCTNAGC 1 cut(s) 780
Bsp19I CCATGG 1 cut(s) 840
BspACI CCGC 3 cut(s) 27, 405, 907
BspANI GGCC 2 cut(s) 146, 323
BspCNI CTCAG 5 cut(s) 26, 223, 463, 578, 772
BspDI ATCGAT 1 cut(s) 309
BspEI TCCGGA 1 cut(s) 891
BspFNI CGCG 2 cut(s) 261, 909
BspLI GGNNCC 3 cut(s) 46, 159, 391
BspMI ACCTGC 1 cut(s) 664
BspPI GGATC 4 cut(s) 152, 165, 384, 397
BsrFI RCCGGY 1 cut(s) 518
BsrI ACTGG 2 cut(s) 763, 877
BssAI RCCGGY 1 cut(s) 518
BssECI CCNNGG 5 cut(s) 161, 162, 225, 663, 840
BssMI GATC 6 cut(s) 21, 157, 306, 315, 389, 499
BssNI GRCGYC 1 cut(s) 222
BssT1I CCWWGG 2 cut(s) 663, 840
Bst2UI CCWGG 1 cut(s) 38
Bst4CI ACNGT 5 cut(s) 10, 74, 245, 352, 397
Bst6I CTCTTC 1 cut(s) 631
BstACI GRCGYC 1 cut(s) 222
BstC8I GCNNGC 4 cut(s) 144, 457, 520, 774
BstDEI CTNAG 6 cut(s) 13, 210, 401, 471, 565, 780
BstDSI CCRYGG 1 cut(s) 840
BstF5I GGATG 1 cut(s) 506
BstFNI CGCG 2 cut(s) 261, 909
BstHHI GCGC 2 cut(s) 261, 362
BstKTI GATC 6 cut(s) 24, 160, 309, 318, 392, 502
BstMAI GTCTC 1 cut(s) 16
BstMBI GATC 6 cut(s) 21, 157, 306, 315, 389, 499
BstMWI GCNNNNNNNGC 1 cut(s) 380
BstNI CCWGG 1 cut(s) 38
BstNSI RCATGY 1 cut(s) 342
BstSCI CCNGG 3 cut(s) 36, 161, 162
BstSLI GKGCMC 1 cut(s) 107
BstUI CGCG 2 cut(s) 261, 909
BstV1I GCAGC 5 cut(s) 16, 182, 367, 788, 812
BstX2I RGATCY 2 cut(s) 157, 389
BstXI CCANNNNNNTGG 1 cut(s) 841
BstYI RGATCY 2 cut(s) 157, 389
Bsu15I ATCGAT 1 cut(s) 309
BsuRI GGCC 2 cut(s) 146, 323
BsuTUI ATCGAT 1 cut(s) 309
BtgI CCRYGG 1 cut(s) 840
BtsCI GGATG 1 cut(s) 506
BtsIMutI CAGTG 2 cut(s) 393, 870
BveI ACCTGC 1 cut(s) 664
Cac8I GCNNGC 4 cut(s) 144, 457, 520, 774
CfoI GCGC 2 cut(s) 261, 362
Cfr10I RCCGGY 1 cut(s) 518
Cfr13I GGNCC 1 cut(s) 410
Cfr9I CCCGGG 1 cut(s) 162
ClaI ATCGAT 1 cut(s) 309
CseI GACGC 1 cut(s) 230
Csp6I GTAC 2 cut(s) 246, 398
CviAII CATG 5 cut(s) 19, 197, 339, 357, 841
CviQI GTAC 2 cut(s) 246, 398
DdeI CTNAG 6 cut(s) 13, 210, 401, 471, 565, 780
DpnI GATC 6 cut(s) 23, 159, 308, 317, 391, 501
DpnII GATC 6 cut(s) 21, 157, 306, 315, 389, 499
Eam1104I CTCTTC 1 cut(s) 631
EarI CTCTTC 1 cut(s) 631
Eco130I CCWWGG 2 cut(s) 663, 840
Eco47I GGWCC 1 cut(s) 410
Eco57I CTGAAG 1 cut(s) 723
Eco88I CYCGRG 1 cut(s) 162
EcoRI GAATTC 1 cut(s) 284
EcoRII CCWGG 1 cut(s) 36
EcoT14I CCWWGG 2 cut(s) 663, 840
ErhI CCWWGG 2 cut(s) 663, 840
FaeI CATG 5 cut(s) 22, 200, 342, 360, 844
FaiI YATR 8 cut(s) 20, 198, 340, 358, 576, 713, 798, 842
FaqI GGGAC 3 cut(s) 327, 455, 897
FatI CATG 5 cut(s) 18, 196, 338, 356, 840
Fnu4HI GCNGC 6 cut(s) 30, 171, 381, 777, 801, 907
FokI GGATG 1 cut(s) 493
Fsp4HI GCNGC 6 cut(s) 30, 171, 381, 777, 801, 907
FspBI CTAG 7 cut(s) 236, 291, 329, 384, 431, 554, 633
GlaI GCGC 2 cut(s) 260, 361
GluI GCNGC 6 cut(s) 30, 171, 381, 777, 801, 907
GsuI CTGGAG 1 cut(s) 59
HaeIII GGCC 2 cut(s) 146, 323
HapII CCGG 4 cut(s) 110, 163, 519, 892
HgaI GACGC 1 cut(s) 230
HhaI GCGC 2 cut(s) 261, 362
Hin1I GRCGYC 1 cut(s) 222
Hin1II CATG 5 cut(s) 22, 200, 342, 360, 844
Hin6I GCGC 2 cut(s) 259, 360
HinP1I GCGC 2 cut(s) 259, 360
HindIII AAGCTT 1 cut(s) 707
HinfI GANTC 3 cut(s) 65, 443, 613
HpaII CCGG 4 cut(s) 110, 163, 519, 892
HphI GGTGA 2 cut(s) 26, 799
Hpy166II GTNNAC 1 cut(s) 410
Hpy188I TCNGA 4 cut(s) 472, 618, 742, 756
Hpy188III TCNNGA 5 cut(s) 151, 291, 539, 567, 892
Hpy8I GTNNAC 1 cut(s) 410
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 4 cut(s) 148, 432, 747, 762
HpyCH4III ACNGT 5 cut(s) 10, 74, 245, 352, 397
HpyCH4IV ACGT 1 cut(s) 280
HpyCH4V TGCA 2 cut(s) 455, 800
HpyF10VI GCNNNNNNNGC 1 cut(s) 380
HpyF3I CTNAG 6 cut(s) 13, 210, 401, 471, 565, 780
HpySE526I ACGT 1 cut(s) 280
Hsp92I GRCGYC 1 cut(s) 222
Hsp92II CATG 5 cut(s) 22, 200, 342, 360, 844
HspAI GCGC 2 cut(s) 259, 360
Kpn2I TCCGGA 1 cut(s) 891
KroI GCCGGC 1 cut(s) 518
KroNI GCCGGC 1 cut(s) 520
Kzo9I GATC 6 cut(s) 21, 157, 306, 315, 389, 499
LmnI GCTCC 1 cut(s) 664
Lsp1109I GCAGC 5 cut(s) 16, 182, 367, 788, 812
LweI GCATC 1 cut(s) 497
MaeI CTAG 7 cut(s) 236, 291, 329, 384, 431, 554, 633
MaeII ACGT 1 cut(s) 280
MaeIII GTNAC 2 cut(s) 135, 218
MalI GATC 6 cut(s) 23, 159, 308, 317, 391, 501
MboI GATC 6 cut(s) 21, 157, 306, 315, 389, 499
MboII GAAGA 5 cut(s) 344, 447, 554, 648, 907
MfeI CAATTG 1 cut(s) 579
MflI RGATCY 2 cut(s) 157, 389
MhlI GDGCHC 1 cut(s) 107
MluCI AATT 5 cut(s) 86, 284, 579, 898, 913
MlyI GAGTC 2 cut(s) 437, 607
MmeI TCCRAC 1 cut(s) 72
MnlI CCTC 7 cut(s) 34, 117, 184, 235, 287, 563, 876
MroI TCCGGA 1 cut(s) 891
MroNI GCCGGC 1 cut(s) 518
MseI TTAA 6 cut(s) 114, 846, 861, 878, 912, 916
MslI CAYNNNNRTG 2 cut(s) 131, 195
MspA1I CMGCKG 2 cut(s) 29, 779
MspI CCGG 4 cut(s) 110, 163, 519, 892
MspR9I CCNGG 3 cut(s) 38, 163, 164
MunI CAATTG 1 cut(s) 579
MvaI CCWGG 1 cut(s) 38
MvnI CGCG 2 cut(s) 261, 909
MwoI GCNNNNNNNGC 1 cut(s) 380
NaeI GCCGGC 1 cut(s) 520
NciI CCSGG 2 cut(s) 163, 164
NcoI CCATGG 1 cut(s) 840
NdeII GATC 6 cut(s) 21, 157, 306, 315, 389, 499
NgoMIV GCCGGC 1 cut(s) 518
NlaIII CATG 5 cut(s) 22, 200, 342, 360, 844
NlaIV GGNNCC 3 cut(s) 46, 159, 391
NmuCI GTSAC 1 cut(s) 218
NspI RCATGY 1 cut(s) 342
PacI TTAATTAA 1 cut(s) 916
PaqCI CACCTGC 1 cut(s) 664
PdiI GCCGGC 1 cut(s) 520
PfeI GAWTC 1 cut(s) 65
PflFI GACNNNGTC 3 cut(s) 352, 368, 534
PkrI GCNGC 6 cut(s) 31, 172, 382, 778, 802, 908
PleI GAGTC 2 cut(s) 437, 607
PpsI GAGTC 2 cut(s) 437, 607
PshBI ATTAAT 1 cut(s) 861
Psp6I CCWGG 1 cut(s) 36
PspGI CCWGG 1 cut(s) 36
PspN4I GGNNCC 3 cut(s) 46, 159, 391
PspPI GGNCC 1 cut(s) 410
PsuI RGATCY 2 cut(s) 157, 389
PsyI GACNNNGTC 3 cut(s) 352, 368, 534
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 2 cut(s) 247, 399
RsaNI GTAC 2 cut(s) 246, 398
RseI CAYNNNNRTG 2 cut(s) 131, 195
SaqAI TTAA 6 cut(s) 114, 846, 861, 878, 912, 916
SatI GCNGC 6 cut(s) 30, 171, 381, 777, 801, 907
Sau3AI GATC 6 cut(s) 21, 157, 306, 315, 389, 499
Sau96I GGNCC 1 cut(s) 410
SchI GAGTC 2 cut(s) 437, 607
ScrFI CCNGG 3 cut(s) 38, 163, 164
SduI GDGCHC 1 cut(s) 107
SfaNI GCATC 1 cut(s) 497
SinI GGWCC 1 cut(s) 410
SmaI CCCGGG 1 cut(s) 164
SmiMI CAYNNNNRTG 2 cut(s) 131, 195
Sse9I AATT 5 cut(s) 86, 284, 579, 898, 913
SsiI CCGC 3 cut(s) 27, 405, 907
SspMI CTAG 7 cut(s) 236, 291, 329, 384, 431, 554, 633
StyD4I CCNGG 3 cut(s) 36, 161, 162
StyI CCWWGG 2 cut(s) 663, 840
TaaI ACNGT 5 cut(s) 10, 74, 245, 352, 397
TaiI ACGT 1 cut(s) 283
TaqI TCGA 6 cut(s) 59, 150, 309, 491, 525, 690
TasI AATT 5 cut(s) 86, 284, 579, 898, 913
TatI WGTACW 1 cut(s) 397
TauI GCSGC 1 cut(s) 909
TfiI GAWTC 1 cut(s) 65
Tru1I TTAA 6 cut(s) 114, 846, 861, 878, 912, 916
Tru9I TTAA 6 cut(s) 114, 846, 861, 878, 912, 916
TscAI CASTG 2 cut(s) 400, 877
TseFI GTSAC 1 cut(s) 218
TseI GCWGC 5 cut(s) 29, 170, 380, 776, 800
Tsp45I GTSAC 1 cut(s) 218
TspGWI ACGGA 1 cut(s) 121
TspMI CCCGGG 1 cut(s) 162
TspRI CASTG 2 cut(s) 400, 877
Tth111I GACNNNGTC 3 cut(s) 352, 368, 534
VpaK11BI GGWCC 1 cut(s) 410
VspI ATTAAT 1 cut(s) 861
XapI RAATTY 1 cut(s) 284
XbaI TCTAGA 1 cut(s) 290
XceI RCATGY 1 cut(s) 342
XcmI CCANNNNNNNNNTGG 1 cut(s) 847
XmaI CCCGGG 1 cut(s) 162
XspI CTAG 7 cut(s) 236, 291, 329, 384, 431, 554, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.