Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0015171

Physical Location & Seq

Genomic Coordinates Forward (+)

17319119 .. 17321202

Gene Structure 2084 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G47250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 834 bp

ATGTTCAGGAACCAGTACGACACAGATGTGACAACATGGAGTCCCACAGGTCGACTATTCCAAGTCGAATACGCCATGGAAGCTGTGAAACAAGGCTCCGCAGCAATAGGACTCAGATCTCGCTCTCATGTCGTCCTCGCTTGTGTCAACAAAGCACAATCAGAGCTCTCTTCTCATCAAAGGAAGATCTTTAAAGTCGATGATCATATTGGTGTTGCTATTGCTGGTCTCACTGCTGATGGTCGTGTTCTCTCTCGATATATGAGATCTGAGTCTATTAATCACTCTTTTACTTATGAGTCTCCTCTTCCTGTTGGTCGTCTTGTTGTTCATCTTGCTGATAAAGCTCAGGTATGTACCCAACGATCATGGAAACGGCCTTATGGTGTGGGTTTGCTGGTAGGTGGATTGGACGAGTCAGGAGCTCACCTCTACTACAACTGCCCTAGCGGAAACTACTTTGAATATCAAGCATTCGCTATCGGGTCTCGTTCACAAGCTGCGAAAACCTATCTGGAGCGCAAATTCGAGAGCTTCCAAGAATCATCAAAAGAAGATCTGATAAAAGATGCTATTATGGCCATAAGGGAAACTTTGCAAGGGGAAACACTGAAGAGCTCGCTCTGCACTGTTTCTGTTCTAGGAGTCGATGAACCATTCCATTTCTTGGACCAGGAAAGCATTCAAAAGGTGATTGATACGTTTGAGAAGGTTCCTGAGGAAGAGGAAGATGCTGGTGAGGGTGAGGCCGAACCCGAAGCTGCTCCTGGTGCTGCTGGAACTGGTGAACAAGGTGGTTCAGGTGATCAAGATGTTGCACCAATGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

277

Amino Acids

30.41

Weight (kDa)

4.97

Isoelectric Point (pI)

52.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	8.6e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	29 - 213	3.9e-56	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47250 AT5G42790
fragaria_vesca	FvH4_2g39570
malus_domestica	MD08G1028900.v1.1
prunus_persica	Prupe.1G376700_v2.0.a1
pyrus_communis	pycom08g02270 pycom15g02100
rosa_chinensis	RchiOBHm_Chr6g0301351
rosa_laevigata	RLG00000011258
rosa_roxburghii	Rroxscaffold_7G00166890
rosa_rugosa	Rorug06G0303900
rosa_samantha	Rh6AG417500 Rh6BG424200 Rh6CG431300 Rh6DG417200
rosa_wichuraiana	Rw6G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	52
AciI	CCGC	2 cut(s)	99, 450
AcoI	YGGCCR	1 cut(s)	579
AcsI	RAATTY	2 cut(s)	524, 828
AcuI	CTGAAG	1 cut(s)	632
AfaI	GTAC	2 cut(s)	17, 358
AfiI	CCNNNNNNNGG	1 cut(s)	667
AgsI	TTSAA	2 cut(s)	464, 686
AjnI	CCWGG	2 cut(s)	672, 766
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	8 cut(s)	83, 166, 347, 425, 500, 534, 618, 761
AluI	AGCT	8 cut(s)	83, 166, 347, 425, 500, 534, 618, 761
Alw21I	GWGCWC	3 cut(s)	168, 427, 620
Alw26I	GTCTC	3 cut(s)	233, 306, 492
AoxI	GGCC	3 cut(s)	377, 579, 747
ApeKI	GCWGC	4 cut(s)	101, 500, 761, 773
ApoI	RAATTY	2 cut(s)	524, 828
AseI	ATTAAT	1 cut(s)	279
Asp700I	GAANNNNTTC	1 cut(s)	681
AspLEI	GCGC	1 cut(s)	522
AspS9I	GGNCC	1 cut(s)	670
AsuHPI	GGTGA	6 cut(s)	419, 703, 749, 755, 797, 815
AvaII	GGWCC	1 cut(s)	670
AxyI	CCTNAGG	1 cut(s)	717
BalI	TGGCCA	1 cut(s)	581
BanII	GRGCYC	3 cut(s)	168, 427, 620
Bbv12I	GWGCWC	3 cut(s)	168, 427, 620
BbvI	GCAGC	4 cut(s)	113, 487, 748, 760
BccI	CCATC	1 cut(s)	233
BceAI	ACGGC	1 cut(s)	392
BciT130I	CCWGG	2 cut(s)	674, 768
BclI	TGATCA	2 cut(s)	202, 805
BcoDI	GTCTC	3 cut(s)	233, 306, 492
BfaI	CTAG	2 cut(s)	447, 641
BglII	AGATCT	4 cut(s)	116, 186, 266, 556
BisI	GCNGC	4 cut(s)	102, 501, 762, 774
BlsI	GCNGC	4 cut(s)	103, 502, 763, 775
Bme1390I	CCNGG	2 cut(s)	674, 768
Bme18I	GGWCC	1 cut(s)	670
BmgT120I	GGNCC	1 cut(s)	670
BmiI	GGNNCC	3 cut(s)	11, 97, 714
BmrFI	CCNGG	2 cut(s)	674, 768
BmsI	GCATC	2 cut(s)	559, 721
BplI	GAGNNNNNCTC	2 cut(s)	414, 446
BpmI	CTGGAG	1 cut(s)	536
Bpu10I	CCTNAGC	1 cut(s)	348
BsaI	GGTCTC	2 cut(s)	233, 492
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	1 cut(s)	667
Bse1I	ACTGG	2 cut(s)	13, 787
Bse21I	CCTNAGG	1 cut(s)	717
BseBI	CCWGG	2 cut(s)	674, 768
BseDI	CCNNGG	1 cut(s)	75
BseLI	CCNNNNNNNGG	1 cut(s)	667
BseMII	CTCAG	4 cut(s)	127, 261, 362, 708
BseNI	ACTGG	2 cut(s)	13, 787
BseRI	GAGGAG	1 cut(s)	294
BseXI	GCAGC	4 cut(s)	113, 487, 748, 760
BsgI	GTGCAG	1 cut(s)	610
BshFI	GGCC	3 cut(s)	379, 581, 749
BsiHKAI	GWGCWC	3 cut(s)	168, 427, 620
BslFI	GGGAC	1 cut(s)	27
BslI	CCNNNNNNNGG	1 cut(s)	667
BsmAI	GTCTC	3 cut(s)	233, 306, 492
BsmFI	GGGAC	1 cut(s)	27
BsmI	GAATGC	2 cut(s)	473, 681
BsnI	GGCC	3 cut(s)	379, 581, 749
Bso31I	GGTCTC	2 cut(s)	233, 492
Bsp1286I	GDGCHC	3 cut(s)	168, 427, 620
Bsp143I	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	2 cut(s)	99, 450
BspANI	GGCC	3 cut(s)	379, 581, 749
BspCNI	CTCAG	4 cut(s)	126, 262, 361, 709
BspLI	GGNNCC	3 cut(s)	11, 97, 714
BspQI	GCTCTTC	1 cut(s)	608
BspTNI	GGTCTC	2 cut(s)	233, 492
BsrI	ACTGG	2 cut(s)	13, 787
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	674, 768
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	4 cut(s)	175, 312, 608, 717
BstC8I	GCNNGC	1 cut(s)	620
BstDEI	CTNAG	4 cut(s)	113, 270, 348, 717
BstDSI	CCRYGG	1 cut(s)	75
BstHHI	GCGC	1 cut(s)	522
BstKTI	GATC	7 cut(s)	119, 189, 205, 269, 368, 559, 808
BstMAI	GTCTC	3 cut(s)	233, 306, 492
BstMBI	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
BstMWI	GCNNNNNNNGC	5 cut(s)	80, 344, 578, 624, 770
BstNI	CCWGG	2 cut(s)	674, 768
BstSCI	CCNGG	2 cut(s)	672, 766
BstV1I	GCAGC	4 cut(s)	113, 487, 748, 760
BstX2I	RGATCY	4 cut(s)	116, 186, 266, 556
BstYI	RGATCY	4 cut(s)	116, 186, 266, 556
Bsu36I	CCTNAGG	1 cut(s)	717
BsuRI	GGCC	3 cut(s)	379, 581, 749
BtgI	CCRYGG	1 cut(s)	75
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	3 cut(s)	231, 608, 627
Cac8I	GCNNGC	1 cut(s)	620
CfoI	GCGC	1 cut(s)	522
Cfr13I	GGNCC	1 cut(s)	670
Csp6I	GTAC	2 cut(s)	16, 357
CviAII	CATG	4 cut(s)	36, 76, 128, 369
CviQI	GTAC	2 cut(s)	16, 357
DdeI	CTNAG	4 cut(s)	113, 270, 348, 717
DpnI	GATC	7 cut(s)	118, 188, 204, 268, 367, 558, 807
DpnII	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
DraI	TTTAAA	1 cut(s)	193
EaeI	YGGCCR	1 cut(s)	579
Eam1104I	CTCTTC	4 cut(s)	175, 312, 608, 717
EarI	CTCTTC	4 cut(s)	175, 312, 608, 717
Ecl136II	GAGCTC	3 cut(s)	166, 425, 618
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	3 cut(s)	168, 427, 620
Eco31I	GGTCTC	2 cut(s)	233, 492
Eco47I	GGWCC	1 cut(s)	670
Eco53kI	GAGCTC	3 cut(s)	166, 425, 618
Eco57I	CTGAAG	1 cut(s)	632
Eco81I	CCTNAGG	1 cut(s)	717
EcoICRI	GAGCTC	3 cut(s)	166, 425, 618
EcoRII	CCWGG	2 cut(s)	672, 766
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	3 cut(s)	168, 427, 620
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	39, 79, 131, 372
FalI	AAGNNNNNCTT	2 cut(s)	577, 609
FaqI	GGGAC	1 cut(s)	27
FatI	CATG	4 cut(s)	35, 75, 127, 368
FbaI	TGATCA	2 cut(s)	202, 805
FblI	GTMKAC	1 cut(s)	52
Fnu4HI	GCNGC	4 cut(s)	102, 501, 762, 774
FriOI	GRGCYC	3 cut(s)	168, 427, 620
Fsp4HI	GCNGC	4 cut(s)	102, 501, 762, 774
FspBI	CTAG	2 cut(s)	447, 641
GlaI	GCGC	1 cut(s)	521
GluI	GCNGC	4 cut(s)	102, 501, 762, 774
GsuI	CTGGAG	1 cut(s)	536
HaeIII	GGCC	3 cut(s)	379, 581, 749
HhaI	GCGC	1 cut(s)	522
Hin1II	CATG	4 cut(s)	39, 79, 131, 372
Hin6I	GCGC	1 cut(s)	520
HinP1I	GCGC	1 cut(s)	520
HincII	GTYRAC	2 cut(s)	53, 148
HindII	GTYRAC	2 cut(s)	53, 148
HinfI	GANTC	7 cut(s)	40, 111, 272, 299, 416, 542, 645
HphI	GGTGA	6 cut(s)	419, 703, 749, 755, 797, 815
Hpy166II	GTNNAC	4 cut(s)	53, 148, 494, 788
Hpy188I	TCNGA	4 cut(s)	116, 163, 271, 561
Hpy188III	TCNNGA	7 cut(s)	7, 255, 420, 515, 529, 716, 809
Hpy8I	GTNNAC	4 cut(s)	53, 148, 494, 788
HpyAV	CCTTC	1 cut(s)	703
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	1 cut(s)	701
HpyCH4V	TGCA	3 cut(s)	598, 627, 818
HpyF10VI	GCNNNNNNNGC	5 cut(s)	80, 344, 578, 624, 770
HpyF3I	CTNAG	4 cut(s)	113, 270, 348, 717
HpySE526I	ACGT	1 cut(s)	701
Hsp92II	CATG	4 cut(s)	39, 79, 131, 372
HspAI	GCGC	1 cut(s)	520
Ksp22I	TGATCA	2 cut(s)	202, 805
Kzo9I	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
LguI	GCTCTTC	1 cut(s)	608
LmnI	GCTCC	4 cut(s)	101, 422, 517, 769
Lsp1109I	GCAGC	4 cut(s)	113, 487, 748, 760
LweI	GCATC	2 cut(s)	559, 721
MaeI	CTAG	2 cut(s)	447, 641
MaeII	ACGT	1 cut(s)	701
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	7 cut(s)	118, 188, 204, 268, 367, 558, 807
MboI	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
MboII	GAAGA	7 cut(s)	162, 196, 299, 566, 625, 734, 740
MflI	RGATCY	4 cut(s)	116, 186, 266, 556
MhlI	GDGCHC	3 cut(s)	168, 427, 620
MlsI	TGGCCA	1 cut(s)	581
MluCI	AATT	2 cut(s)	524, 828
MluNI	TGGCCA	1 cut(s)	581
MlyI	GAGTC	6 cut(s)	49, 105, 281, 308, 425, 654
MnlI	CCTC	7 cut(s)	146, 315, 440, 712, 718, 733, 739
Mox20I	TGGCCA	1 cut(s)	581
MroXI	GAANNNNTTC	1 cut(s)	681
MscI	TGGCCA	1 cut(s)	581
MseI	TTAA	2 cut(s)	192, 279
MslI	CAYNNNNRTG	2 cut(s)	26, 210
Msp20I	TGGCCA	1 cut(s)	581
MspR9I	CCNGG	2 cut(s)	674, 768
Mva1269I	GAATGC	2 cut(s)	473, 681
MvaI	CCWGG	2 cut(s)	674, 768
MwoI	GCNNNNNNNGC	5 cut(s)	80, 344, 578, 624, 770
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
NlaIII	CATG	4 cut(s)	39, 79, 131, 372
NlaIV	GGNNCC	3 cut(s)	11, 97, 714
NmuCI	GTSAC	1 cut(s)	28
OliI	CACNNNNGTG	1 cut(s)	26
PciSI	GCTCTTC	1 cut(s)	608
PctI	GAATGC	2 cut(s)	473, 681
PdmI	GAANNNNTTC	1 cut(s)	681
PfeI	GAWTC	1 cut(s)	542
PflMI	CCANNNNNTGG	1 cut(s)	667
PkrI	GCNGC	4 cut(s)	103, 502, 763, 775
PleI	GAGTC	6 cut(s)	48, 105, 280, 307, 424, 653
PpsI	GAGTC	6 cut(s)	48, 105, 280, 307, 424, 653
PshBI	ATTAAT	1 cut(s)	279
Psp124BI	GAGCTC	3 cut(s)	168, 427, 620
Psp6I	CCWGG	2 cut(s)	672, 766
PspGI	CCWGG	2 cut(s)	672, 766
PspN4I	GGNNCC	3 cut(s)	11, 97, 714
PspPI	GGNCC	1 cut(s)	670
PsuI	RGATCY	4 cut(s)	116, 186, 266, 556
RsaI	GTAC	2 cut(s)	17, 358
RsaNI	GTAC	2 cut(s)	16, 357
RseI	CAYNNNNRTG	2 cut(s)	26, 210
SacI	GAGCTC	3 cut(s)	168, 427, 620
SalI	GTCGAC	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	608
SaqAI	TTAA	2 cut(s)	192, 279
SatI	GCNGC	4 cut(s)	102, 501, 762, 774
Sau3AI	GATC	7 cut(s)	116, 186, 202, 266, 365, 556, 805
Sau96I	GGNCC	1 cut(s)	670
SchI	GAGTC	6 cut(s)	49, 105, 281, 308, 425, 654
ScrFI	CCNGG	2 cut(s)	674, 768
SduI	GDGCHC	3 cut(s)	168, 427, 620
SfaNI	GCATC	2 cut(s)	559, 721
SinI	GGWCC	1 cut(s)	670
SmiMI	CAYNNNNRTG	2 cut(s)	26, 210
Sse9I	AATT	2 cut(s)	524, 828
SsiI	CCGC	2 cut(s)	99, 450
SspMI	CTAG	2 cut(s)	447, 641
SstI	GAGCTC	3 cut(s)	168, 427, 620
StyD4I	CCNGG	2 cut(s)	672, 766
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	1 cut(s)	704
TaqI	TCGA	6 cut(s)	52, 66, 198, 256, 528, 648
TasI	AATT	2 cut(s)	524, 828
TfiI	GAWTC	1 cut(s)	542
Tru1I	TTAA	2 cut(s)	192, 279
Tru9I	TTAA	2 cut(s)	192, 279
TscAI	CASTG	3 cut(s)	238, 615, 634
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	4 cut(s)	101, 500, 761, 773
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	320, 666
TspRI	CASTG	3 cut(s)	238, 615, 634
Van91I	CCANNNNNTGG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	670
VspI	ATTAAT	1 cut(s)	279
XapI	RAATTY	2 cut(s)	524, 828
XmiI	GTMKAC	1 cut(s)	52
XmnI	GAANNNNTTC	1 cut(s)	681
XspI	CTAG	2 cut(s)	447, 641

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.