Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0015171

Physical Location & Seq

Genomic Coordinates Forward (+)

28394944 .. 28397922

Gene Structure 2979 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g39570.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTCAGGAACCAGTACGACACTGACGTCACTACATGGAGCCCCGCCGGGCGGCTCTTCCAGGTCGAGTACGCCATGGAGGCCGTGAAGCAAGGCTCGGCGGCGATTGGCCTCCGATCTAAGACCCACGTGGTCATGGCCTGCGTCAACAAGGCCAACTCCGAGCTCTCTTCTCACCAGAAGAAGATTTTCAAGGTCGACGACCACATCGGCGTCGCCATTGCCGGACTCACCGCCGACGGCCGTGTTCTCTCGCGCTACATGCGATCCGAGTGCATCAACTACAACTACACTTACGAGTCGCCTCTCCCCGTCGGACGACTCGTCGTTCAGCTCGCCGATAAGGCGCAGGTTTGCACTCAACGATCATGGAAACGACCATATGGTGTGGGACTTCTAGTAGGTGGTTTAGATGAATCTGGAGCCCATCTATATTACAACTGCCCAAGTGGAAACTACTTTGAATACCAGGCTTTTGCAATCGGGTCTCGCTCACAAGCTGCAAAGACATACTTGGAGCGCAGGTTTAAGAGCTTCAACGATGCAAAACTGGATGAGCTGATCAAGGATGCACTCATTGCAACAAGGGAAACCTTGCAGGGGGAAAAACTCAGGAGTTCCATATGCACAGTTGCTGTGATGGGAGTTGATGAGGCATTCCATATATTGGATCAGGACAAAGTTCAGCAGCTGATTGATGATTTCGAGATCGTGGGGCAGGATGAAGCTCCTGCTGCTGAACCTGATACTGATATTCCAGCTGAGCAGGGTGCTCCTGCAGAAGGGGGTGCTGGGGCTGGAGCTGACACGGGTGCTGCTCCTGAAGCCGATGTAGCTCCAATGGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

284

Amino Acids

30.81

Weight (kDa)

4.97

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	8.5e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	29 - 213	8.8e-56	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47250 AT5G42790
fragaria_vesca	FvH4_2g39570
malus_domestica	MD08G1028900.v1.1
prunus_persica	Prupe.1G376700_v2.0.a1
pyrus_communis	pycom08g02270 pycom15g02100
rosa_chinensis	RchiOBHm_Chr6g0301351
rosa_laevigata	RLG00000011258
rosa_roxburghii	Rroxscaffold_7G00166890
rosa_rugosa	Rorug06G0303900
rosa_samantha	Rh6AG417500 Rh6BG424200 Rh6CG431300 Rh6DG417200
rosa_wichuraiana	Rw6G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	26
AatII	GACGTC	1 cut(s)	30
Acc36I	ACCTGC	2 cut(s)	340, 513
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccI	GTMKAC	1 cut(s)	198
AccII	CGCG	1 cut(s)	256
AciI	CCGC	4 cut(s)	45, 52, 101, 234
AclWI	GGATC	2 cut(s)	261, 678
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	843
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	2 cut(s)	27, 213
AfaI	GTAC	2 cut(s)	17, 71
AfiI	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
AgsI	TTSAA	3 cut(s)	193, 464, 538
AhdI	GACNNNNNGTC	1 cut(s)	323
AjnI	CCWGG	2 cut(s)	60, 468
Alw21I	GWGCWC	2 cut(s)	168, 775
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	2 cut(s)	261, 678
AlwNI	CAGNNNCTG	2 cut(s)	635, 691
AoxI	GGCC	5 cut(s)	81, 109, 138, 153, 241
ApeKI	GCWGC	4 cut(s)	500, 688, 734, 815
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	3 cut(s)	258, 349, 522
AsuC2I	CCSGG	1 cut(s)	49
AsuHPI	GGTGA	2 cut(s)	167, 223
BanII	GRGCYC	3 cut(s)	44, 168, 427
BbrPI	CACGTG	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	168, 775
BbvI	GCAGC	4 cut(s)	487, 700, 721, 802
BccI	CCATC	2 cut(s)	435, 634
BceAI	ACGGC	3 cut(s)	68, 228, 256
BcgI	CGANNNNNNTGC	2 cut(s)	255, 289
BciT130I	CCWGG	2 cut(s)	62, 470
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	1 cut(s)	49
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	398
BfmI	CTRYAG	1 cut(s)	777
BfuAI	ACCTGC	2 cut(s)	340, 513
BglI	GCCNNNNNGGC	2 cut(s)	80, 344
BisI	GCNGC	6 cut(s)	53, 102, 501, 689, 735, 816
BlpI	GCTNAGC	1 cut(s)	762
BlsI	GCNGC	6 cut(s)	54, 103, 502, 690, 736, 817
Bme1390I	CCNGG	3 cut(s)	49, 62, 470
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmiI	GGNNCC	3 cut(s)	11, 41, 424
BmrFI	CCNGG	3 cut(s)	49, 62, 470
BmsI	GCATC	3 cut(s)	285, 532, 559
BpmI	CTGGAG	2 cut(s)	441, 819
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuMI	CCSGG	1 cut(s)	49
BsaAI	YACGTR	1 cut(s)	130
BsaHI	GRCGYC	2 cut(s)	27, 213
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	1 cut(s)	75
BsaXI	ACNNNNNCTCC	2 cut(s)	509, 539
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
Bse1I	ACTGG	2 cut(s)	13, 555
Bse3DI	GCAATG	2 cut(s)	219, 576
BseBI	CCWGG	2 cut(s)	62, 470
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	3 cut(s)	559, 574, 727
BseLI	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
BseMI	GCAATG	2 cut(s)	219, 576
BseMII	CTCAG	2 cut(s)	625, 753
BseNI	ACTGG	2 cut(s)	13, 555
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	4 cut(s)	487, 700, 721, 802
BseYI	CCCAGC	1 cut(s)	791
Bsh1236I	CGCG	1 cut(s)	256
Bsh1285I	CGRYCG	1 cut(s)	244
BshFI	GGCC	5 cut(s)	83, 111, 140, 155, 243
BsiEI	CGRYCG	1 cut(s)	244
BsiHKAI	GWGCWC	2 cut(s)	168, 775
BsiSI	CCGG	2 cut(s)	48, 225
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	4 cut(s)	51, 600, 667, 782
BsmAI	GTCTC	1 cut(s)	492
BsmFI	GGGAC	1 cut(s)	405
BsmI	GAATGC	1 cut(s)	656
BsnI	GGCC	5 cut(s)	83, 111, 140, 155, 243
Bso31I	GGTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	4 cut(s)	44, 168, 427, 775
Bsp143I	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
Bsp1720I	GCTNAGC	1 cut(s)	762
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	4 cut(s)	45, 52, 101, 234
BspANI	GGCC	5 cut(s)	83, 111, 140, 155, 243
BspCNI	CTCAG	2 cut(s)	624, 754
BspFNI	CGCG	1 cut(s)	256
BspLI	GGNNCC	3 cut(s)	11, 41, 424
BspMAI	CTGCAG	1 cut(s)	781
BspMI	ACCTGC	2 cut(s)	340, 513
BspPI	GGATC	2 cut(s)	261, 678
BspQI	GCTCTTC	1 cut(s)	62
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	219, 576
BsrI	ACTGG	2 cut(s)	13, 555
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
BssNI	GRCGYC	2 cut(s)	27, 213
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	62, 470
Bst4CI	ACNGT	1 cut(s)	631
Bst6I	CTCTTC	2 cut(s)	62, 175
BstACI	GRCGYC	2 cut(s)	27, 213
BstAPI	GCANNNNNTGC	1 cut(s)	578
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	142, 336
BstDEI	CTNAG	3 cut(s)	120, 611, 762
BstDSI	CCRYGG	1 cut(s)	75
BstENI	CCTNNNNNAGG	1 cut(s)	780
BstF5I	GGATG	3 cut(s)	559, 574, 727
BstFNI	CGCG	1 cut(s)	256
BstHHI	GCGC	3 cut(s)	258, 349, 522
BstKTI	GATC	6 cut(s)	119, 269, 368, 564, 673, 711
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
BstMCI	CGRYCG	1 cut(s)	244
BstMWI	GCNNNNNNNGC	7 cut(s)	80, 262, 344, 578, 734, 824, 833
BstNI	CCWGG	2 cut(s)	62, 470
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	3 cut(s)	47, 60, 468
BstSFI	CTRYAG	1 cut(s)	777
BstUI	CGCG	1 cut(s)	256
BstV1I	GCAGC	4 cut(s)	487, 700, 721, 802
BstZI	CGGCCG	1 cut(s)	241
BsuRI	GGCC	5 cut(s)	83, 111, 140, 155, 243
BtgI	CCRYGG	1 cut(s)	75
BtsCI	GGATG	3 cut(s)	559, 574, 727
BtsIMutI	CAGTG	1 cut(s)	21
BveI	ACCTGC	2 cut(s)	340, 513
Cac8I	GCNNGC	2 cut(s)	142, 336
CaiI	CAGNNNCTG	2 cut(s)	635, 691
CfoI	GCGC	3 cut(s)	258, 349, 522
CseI	GACGC	2 cut(s)	133, 202
Csp6I	GTAC	2 cut(s)	16, 70
CviAII	CATG	5 cut(s)	36, 76, 136, 262, 369
CviQI	GTAC	2 cut(s)	16, 70
DdeI	CTNAG	3 cut(s)	120, 611, 762
DpnI	GATC	6 cut(s)	118, 268, 367, 563, 672, 710
DpnII	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
DrdI	GACNNNNNNGTC	1 cut(s)	26
DriI	GACNNNNNGTC	1 cut(s)	323
DseDI	GACNNNNNNGTC	1 cut(s)	26
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	62, 175
Eam1105I	GACNNNNNGTC	1 cut(s)	323
EarI	CTCTTC	2 cut(s)	62, 175
Ecl136II	GAGCTC	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	3 cut(s)	44, 168, 427
Eco31I	GGTCTC	1 cut(s)	492
Eco52I	CGGCCG	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	843
Eco72I	CACGTG	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	166
EcoNI	CCTNNNNNAGG	1 cut(s)	780
EcoRII	CCWGG	2 cut(s)	60, 468
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	3 cut(s)	44, 168, 427
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	5 cut(s)	39, 79, 139, 265, 372
FalI	AAGNNNNNCTT	2 cut(s)	497, 529
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	5 cut(s)	35, 75, 135, 261, 368
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	2 cut(s)	382, 623
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	6 cut(s)	53, 102, 501, 689, 735, 816
FokI	GGATG	3 cut(s)	566, 581, 734
FriOI	GRGCYC	3 cut(s)	44, 168, 427
Fsp4HI	GCNGC	6 cut(s)	53, 102, 501, 689, 735, 816
FspBI	CTAG	1 cut(s)	398
GlaI	GCGC	3 cut(s)	257, 348, 521
GluI	GCNGC	6 cut(s)	53, 102, 501, 689, 735, 816
GsaI	CCCAGC	1 cut(s)	795
GsuI	CTGGAG	2 cut(s)	441, 819
HaeIII	GGCC	5 cut(s)	83, 111, 140, 155, 243
HapII	CCGG	2 cut(s)	48, 225
HgaI	GACGC	2 cut(s)	133, 202
HhaI	GCGC	3 cut(s)	258, 349, 522
Hin1I	GRCGYC	2 cut(s)	27, 213
Hin1II	CATG	5 cut(s)	39, 79, 139, 265, 372
Hin6I	GCGC	3 cut(s)	256, 347, 520
HinP1I	GCGC	3 cut(s)	256, 347, 520
HincII	GTYRAC	2 cut(s)	148, 199
HindII	GTYRAC	2 cut(s)	148, 199
HinfI	GANTC	4 cut(s)	228, 299, 321, 416
HpaII	CCGG	2 cut(s)	48, 225
HphI	GGTGA	2 cut(s)	167, 223
Hpy166II	GTNNAC	2 cut(s)	148, 199
Hpy188I	TCNGA	4 cut(s)	116, 163, 271, 317
Hpy188III	TCNNGA	6 cut(s)	7, 420, 613, 674, 706, 821
Hpy8I	GTNNAC	2 cut(s)	148, 199
Hpy99I	CGWCG	5 cut(s)	203, 218, 242, 317, 329
HpyAV	CCTTC	1 cut(s)	776
HpyCH4III	ACNGT	1 cut(s)	631
HpyCH4IV	ACGT	2 cut(s)	27, 129
HpyF10VI	GCNNNNNNNGC	7 cut(s)	80, 262, 344, 578, 734, 824, 833
HpyF3I	CTNAG	3 cut(s)	120, 611, 762
HpySE526I	ACGT	2 cut(s)	27, 129
Hsp92I	GRCGYC	2 cut(s)	27, 213
Hsp92II	CATG	5 cut(s)	39, 79, 139, 265, 372
HspAI	GCGC	3 cut(s)	256, 347, 520
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
LguI	GCTCTTC	1 cut(s)	62
LmnI	GCTCC	8 cut(s)	39, 422, 517, 733, 778, 800, 823, 841
Lsp1109I	GCAGC	4 cut(s)	487, 700, 721, 802
LweI	GCATC	3 cut(s)	285, 532, 559
MaeI	CTAG	1 cut(s)	398
MaeII	ACGT	2 cut(s)	27, 129
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	6 cut(s)	118, 268, 367, 563, 672, 710
MboI	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
MboII	GAAGA	4 cut(s)	49, 162, 193, 196
MhlI	GDGCHC	4 cut(s)	44, 168, 427, 775
MlyI	GAGTC	3 cut(s)	222, 308, 315
MmeI	TCCRAC	1 cut(s)	295
MnlI	CCTC	4 cut(s)	73, 122, 315, 646
MroXI	GAANNNNTTC	1 cut(s)	188
MseI	TTAA	1 cut(s)	528
MspA1I	CMGCKG	2 cut(s)	691, 761
MspI	CCGG	2 cut(s)	48, 225
MspR9I	CCNGG	3 cut(s)	49, 62, 470
Mva1269I	GAATGC	1 cut(s)	656
MvaI	CCWGG	2 cut(s)	62, 470
MvnI	CGCG	1 cut(s)	256
MwoI	GCNNNNNNNGC	7 cut(s)	80, 262, 344, 578, 734, 824, 833
NciI	CCSGG	1 cut(s)	49
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	2 cut(s)	382, 623
NdeII	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
NlaIII	CATG	5 cut(s)	39, 79, 139, 265, 372
NlaIV	GGNNCC	3 cut(s)	11, 41, 424
NmeAIII	GCCGAG	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	265
PciSI	GCTCTTC	1 cut(s)	62
PcsI	WCGNNNNNNNCGW	2 cut(s)	24, 321
PctI	GAATGC	1 cut(s)	656
PdmI	GAANNNNTTC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	416
PflMI	CCANNNNNTGG	1 cut(s)	667
PkrI	GCNGC	6 cut(s)	54, 103, 502, 690, 736, 817
PleI	GAGTC	3 cut(s)	222, 307, 315
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	3 cut(s)	222, 307, 315
Ppu21I	YACGTR	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	2 cut(s)	60, 468
PspCI	CACGTG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	791
PspGI	CCWGG	2 cut(s)	60, 468
PspN4I	GGNNCC	3 cut(s)	11, 41, 424
PstI	CTGCAG	1 cut(s)	781
PstNI	CAGNNNCTG	2 cut(s)	635, 691
PvuII	CAGCTG	2 cut(s)	691, 761
RsaI	GTAC	2 cut(s)	17, 71
RsaNI	GTAC	2 cut(s)	16, 70
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	1 cut(s)	197
SapI	GCTCTTC	1 cut(s)	62
SaqAI	TTAA	1 cut(s)	528
SatI	GCNGC	6 cut(s)	53, 102, 501, 689, 735, 816
Sau3AI	GATC	6 cut(s)	116, 266, 365, 561, 670, 708
SchI	GAGTC	3 cut(s)	222, 308, 315
ScrFI	CCNGG	3 cut(s)	49, 62, 470
SduI	GDGCHC	4 cut(s)	44, 168, 427, 775
SfaNI	GCATC	3 cut(s)	285, 532, 559
SfcI	CTRYAG	1 cut(s)	777
SsiI	CCGC	4 cut(s)	45, 52, 101, 234
SspMI	CTAG	1 cut(s)	398
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	3 cut(s)	47, 60, 468
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	631
TaiI	ACGT	2 cut(s)	30, 132
TaqI	TCGA	3 cut(s)	66, 198, 705
TauI	GCSGC	2 cut(s)	55, 104
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	1 cut(s)	528
Tru9I	TTAA	1 cut(s)	528
TscAI	CASTG	1 cut(s)	28
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	4 cut(s)	500, 688, 734, 815
Tsp45I	GTSAC	1 cut(s)	28
TspDTI	ATGAA	2 cut(s)	429, 738
TspRI	CASTG	1 cut(s)	28
Van91I	CCANNNNNTGG	1 cut(s)	667
XagI	CCTNNNNNAGG	1 cut(s)	780
XceI	RCATGY	1 cut(s)	265
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	398
ZraI	GACGTC	1 cut(s)	28

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.