Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0015171

Physical Location & Seq

Genomic Coordinates Forward (+)

1700909 .. 1702629

Gene Structure 1721 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g02270.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGTTCAGGAACCAATACGACACCGACGTGACGACATGGAGCCCCGCCGGGCGGCTCTTCCAGGTGGAGTACGCCATGGAGGCAGTCAAGCAAGGGTCCGCCGCCATTGGGCTCCGATCCAAAACCCACGTGGTTTTGGCGTGCGTCAACAAGGCCAACTCCGAGCTTTCTTCTCACCAGAAGAAGATCTTCAAGGTCGACGACCATATCGGCGTCGCCATTGCCGGGCTCACAGCCGACGGCCGGGTGCTCTCCCGGTACATGCGGTCGGAGGCCATAAATTACAACTACACCTACGAGTCGCAGCTCCCCGTAGGACGACTCGTCGTTCAGCTCGCCGATAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAGCGACCGTATGGTGTTGGACTATTAGTAGGTGGGTTGGATGAGTCTGGAGCACACCTATATTACAACTGCCCAAGTGGGAACTACTTTGAATACCAGGCATTTGCAATAGGATCGATCGCTCACAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTCACAGGCTCTTCAAGGGAGGATCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

188

Amino Acids

20.8

Weight (kDa)

9.38

Isoelectric Point (pI)

44.22

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47250 AT5G42790
fragaria_vesca	FvH4_2g39570
malus_domestica	MD08G1028900.v1.1
prunus_persica	Prupe.1G376700_v2.0.a1
pyrus_communis	pycom08g02270 pycom15g02100
rosa_chinensis	RchiOBHm_Chr6g0301351
rosa_laevigata	RLG00000011258
rosa_roxburghii	Rroxscaffold_7G00166890
rosa_rugosa	Rorug06G0303900
rosa_samantha	Rh6AG417500 Rh6BG424200 Rh6CG431300 Rh6DG417200
rosa_wichuraiana	Rw6G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	515
AccI	GTMKAC	1 cut(s)	198
AciI	CCGC	5 cut(s)	45, 52, 99, 102, 265
AclWI	GGATC	2 cut(s)	111, 493
AcoI	YGGCCR	1 cut(s)	241
AcvI	CACGTG	1 cut(s)	130
AcyI	GRCGYC	1 cut(s)	213
AfaI	GTAC	3 cut(s)	71, 260, 358
AfeI	AGCGCT	1 cut(s)	365
AfiI	CCNNNNNNNGG	4 cut(s)	51, 108, 225, 243
AgsI	TTSAA	3 cut(s)	193, 464, 551
AhdI	GACNNNNNGTC	1 cut(s)	323
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	2 cut(s)	60, 468
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	4 cut(s)	166, 307, 334, 502
AluI	AGCT	4 cut(s)	166, 307, 334, 502
Alw21I	GWGCWC	2 cut(s)	252, 427
AlwI	GGATC	2 cut(s)	111, 493
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	3 cut(s)	153, 241, 273
ApeKI	GCWGC	2 cut(s)	304, 502
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	1 cut(s)	366
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	4 cut(s)	49, 226, 245, 256
AsuHPI	GGTGA	1 cut(s)	167
AvaII	GGWCC	1 cut(s)	96
BanII	GRGCYC	3 cut(s)	44, 114, 231
BbrPI	CACGTG	1 cut(s)	130
Bbv12I	GWGCWC	2 cut(s)	252, 427
BbvI	GCAGC	2 cut(s)	316, 489
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	468, 502
BciT130I	CCWGG	2 cut(s)	62, 470
BcnI	CCSGG	4 cut(s)	49, 226, 245, 256
BfoI	RGCGCY	1 cut(s)	367
BfuAI	ACCTGC	1 cut(s)	515
BglI	GCCNNNNNGGC	2 cut(s)	80, 344
BglII	AGATCT	1 cut(s)	186
BisI	GCNGC	4 cut(s)	53, 102, 305, 503
BlsI	GCNGC	4 cut(s)	54, 103, 306, 504
Bme1390I	CCNGG	6 cut(s)	49, 62, 226, 245, 256, 470
Bme18I	GGWCC	1 cut(s)	96
BmeRI	GACNNNNNGTC	1 cut(s)	323
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	4 cut(s)	11, 41, 97, 113
BmrFI	CCNGG	6 cut(s)	49, 62, 226, 245, 256, 470
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	348
BpuMI	CCSGG	4 cut(s)	49, 226, 245, 256
Bsa29I	ATCGAT	1 cut(s)	488
BsaAI	YACGTR	1 cut(s)	130
BsaHI	GRCGYC	1 cut(s)	213
BsaJI	CCNNGG	1 cut(s)	75
Bsc4I	CCNNNNNNNGG	4 cut(s)	51, 108, 225, 243
Bse3DI	GCAATG	1 cut(s)	219
BseBI	CCWGG	2 cut(s)	62, 470
BseCI	ATCGAT	1 cut(s)	488
BseDI	CCNNGG	1 cut(s)	75
BseGI	GGATG	1 cut(s)	418
BseLI	CCNNNNNNNGG	4 cut(s)	51, 108, 225, 243
BseMI	GCAATG	1 cut(s)	219
BseMII	CTCAG	1 cut(s)	362
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	2 cut(s)	316, 489
BseYI	CCCAGC	1 cut(s)	360
Bsh1285I	CGRYCG	4 cut(s)	244, 269, 380, 492
BshFI	GGCC	3 cut(s)	155, 243, 275
BshVI	ATCGAT	1 cut(s)	488
BsiEI	CGRYCG	4 cut(s)	244, 269, 380, 492
BsiHKAI	GWGCWC	2 cut(s)	252, 427
BsiSI	CCGG	4 cut(s)	48, 225, 244, 256
BslI	CCNNNNNNNGG	4 cut(s)	51, 108, 225, 243
BsnI	GGCC	3 cut(s)	155, 243, 275
Bsp1286I	GDGCHC	5 cut(s)	44, 114, 231, 252, 427
Bsp143I	GATC	5 cut(s)	116, 186, 485, 489, 558
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	5 cut(s)	45, 52, 99, 102, 265
BspANI	GGCC	3 cut(s)	155, 243, 275
BspCNI	CTCAG	1 cut(s)	361
BspDI	ATCGAT	1 cut(s)	488
BspLI	GGNNCC	4 cut(s)	11, 41, 97, 113
BspMI	ACCTGC	1 cut(s)	515
BspPI	GGATC	2 cut(s)	111, 493
BspQI	GCTCTTC	2 cut(s)	62, 552
BsrDI	GCAATG	1 cut(s)	219
BssECI	CCNNGG	1 cut(s)	75
BssMI	GATC	5 cut(s)	116, 186, 485, 489, 558
BssNI	GRCGYC	1 cut(s)	213
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	2 cut(s)	62, 470
Bst4CI	ACNGT	1 cut(s)	381
Bst6I	CTCTTC	2 cut(s)	62, 552
BstACI	GRCGYC	1 cut(s)	213
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	2 cut(s)	142, 336
BstDEI	CTNAG	1 cut(s)	348
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	1 cut(s)	418
BstH2I	RGCGCY	1 cut(s)	367
BstHHI	GCGC	1 cut(s)	366
BstKTI	GATC	5 cut(s)	119, 189, 488, 492, 561
BstMBI	GATC	5 cut(s)	116, 186, 485, 489, 558
BstMCI	CGRYCG	4 cut(s)	244, 269, 380, 492
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 344
BstNI	CCWGG	2 cut(s)	62, 470
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	6 cut(s)	47, 60, 224, 243, 254, 468
BstV1I	GCAGC	2 cut(s)	316, 489
BstX2I	RGATCY	2 cut(s)	186, 558
BstYI	RGATCY	2 cut(s)	186, 558
BstZI	CGGCCG	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	488
BsuRI	GGCC	3 cut(s)	155, 243, 275
BsuTUI	ATCGAT	1 cut(s)	488
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	1 cut(s)	418
BveI	ACCTGC	1 cut(s)	515
Cac8I	GCNNGC	2 cut(s)	142, 336
CfoI	GCGC	1 cut(s)	366
Cfr13I	GGNCC	1 cut(s)	96
ClaI	ATCGAT	1 cut(s)	488
CseI	GACGC	2 cut(s)	133, 202
Csp6I	GTAC	3 cut(s)	70, 259, 357
CviAII	CATG	4 cut(s)	36, 76, 262, 369
CviQI	GTAC	3 cut(s)	70, 259, 357
DdeI	CTNAG	1 cut(s)	348
DpnI	GATC	5 cut(s)	118, 188, 487, 491, 560
DpnII	GATC	5 cut(s)	116, 186, 485, 489, 558
DriI	GACNNNNNGTC	1 cut(s)	323
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
Eam1104I	CTCTTC	2 cut(s)	62, 552
Eam1105I	GACNNNNNGTC	1 cut(s)	323
EarI	CTCTTC	2 cut(s)	62, 552
EciI	GGCGGA	1 cut(s)	88
EclXI	CGGCCG	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	3 cut(s)	44, 114, 231
Eco47I	GGWCC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	365
Eco52I	CGGCCG	1 cut(s)	241
Eco72I	CACGTG	1 cut(s)	130
EcoRII	CCWGG	2 cut(s)	60, 468
EcoT14I	CCWWGG	1 cut(s)	75
EcoT38I	GRGCYC	3 cut(s)	44, 114, 231
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	39, 79, 265, 372
FaiI	YATR	9 cut(s)	37, 77, 207, 263, 278, 370, 384, 433, 513
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 499, 531
FatI	CATG	4 cut(s)	35, 75, 261, 368
FauI	CCCGC	1 cut(s)	52
FblI	GTMKAC	1 cut(s)	198
Fnu4HI	GCNGC	4 cut(s)	53, 102, 305, 503
FokI	GGATG	1 cut(s)	425
FriOI	GRGCYC	3 cut(s)	44, 114, 231
Fsp4HI	GCNGC	4 cut(s)	53, 102, 305, 503
GlaI	GCGC	1 cut(s)	365
GluI	GCNGC	4 cut(s)	53, 102, 305, 503
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	1 cut(s)	367
HaeIII	GGCC	3 cut(s)	155, 243, 275
HapII	CCGG	4 cut(s)	48, 225, 244, 256
HgaI	GACGC	2 cut(s)	133, 202
HhaI	GCGC	1 cut(s)	366
Hin1I	GRCGYC	1 cut(s)	213
Hin1II	CATG	4 cut(s)	39, 79, 265, 372
Hin6I	GCGC	1 cut(s)	364
HinP1I	GCGC	1 cut(s)	364
HincII	GTYRAC	2 cut(s)	148, 199
HindII	GTYRAC	2 cut(s)	148, 199
HinfI	GANTC	3 cut(s)	299, 321, 416
HpaII	CCGG	4 cut(s)	48, 225, 244, 256
HphI	GGTGA	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	148, 199
Hpy188I	TCNGA	4 cut(s)	116, 163, 271, 563
Hpy188III	TCNNGA	2 cut(s)	7, 420
Hpy8I	GTNNAC	2 cut(s)	148, 199
Hpy99I	CGWCG	5 cut(s)	29, 203, 218, 242, 329
HpyCH4III	ACNGT	1 cut(s)	381
HpyCH4IV	ACGT	2 cut(s)	27, 129
HpyCH4V	TGCA	2 cut(s)	479, 505
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 344
HpyF3I	CTNAG	1 cut(s)	348
HpySE526I	ACGT	2 cut(s)	27, 129
Hsp92I	GRCGYC	1 cut(s)	213
Hsp92II	CATG	4 cut(s)	39, 79, 265, 372
HspAI	GCGC	1 cut(s)	364
Kzo9I	GATC	5 cut(s)	116, 186, 485, 489, 558
LguI	GCTCTTC	2 cut(s)	62, 552
LmnI	GCTCC	4 cut(s)	39, 117, 312, 422
Lsp1109I	GCAGC	2 cut(s)	316, 489
MaeII	ACGT	2 cut(s)	27, 129
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	5 cut(s)	118, 188, 487, 491, 560
MboI	GATC	5 cut(s)	116, 186, 485, 489, 558
MboII	GAAGA	6 cut(s)	49, 162, 181, 193, 196, 539
MflI	RGATCY	2 cut(s)	186, 558
MhlI	GDGCHC	5 cut(s)	44, 114, 231, 252, 427
MluCI	AATT	1 cut(s)	280
MlyI	GAGTC	3 cut(s)	308, 315, 425
MmeI	TCCRAC	3 cut(s)	249, 370, 390
MnlI	CCTC	3 cut(s)	73, 265, 549
MroXI	GAANNNNTTC	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	26
MspI	CCGG	4 cut(s)	48, 225, 244, 256
MspR9I	CCNGG	6 cut(s)	49, 62, 226, 245, 256, 470
MvaI	CCWGG	2 cut(s)	62, 470
MwoI	GCNNNNNNNGC	2 cut(s)	80, 344
NciI	CCSGG	4 cut(s)	49, 226, 245, 256
NcoI	CCATGG	1 cut(s)	75
NdeII	GATC	5 cut(s)	116, 186, 485, 489, 558
NlaIII	CATG	4 cut(s)	39, 79, 265, 372
NlaIV	GGNNCC	4 cut(s)	11, 41, 97, 113
NmuCI	GTSAC	1 cut(s)	28
NspI	RCATGY	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	26
PciSI	GCTCTTC	2 cut(s)	62, 552
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	188
PkrI	GCNGC	4 cut(s)	54, 103, 306, 504
Ple19I	CGATCG	1 cut(s)	492
PleI	GAGTC	3 cut(s)	307, 315, 424
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	3 cut(s)	307, 315, 424
Ppu21I	YACGTR	1 cut(s)	130
Psp6I	CCWGG	2 cut(s)	60, 468
PspCI	CACGTG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	2 cut(s)	60, 468
PspN4I	GGNNCC	4 cut(s)	11, 41, 97, 113
PspPI	GGNCC	1 cut(s)	96
PsuI	RGATCY	2 cut(s)	186, 558
PvuI	CGATCG	1 cut(s)	492
RsaI	GTAC	3 cut(s)	71, 260, 358
RsaNI	GTAC	3 cut(s)	70, 259, 357
RseI	CAYNNNNRTG	1 cut(s)	26
SalI	GTCGAC	1 cut(s)	197
SapI	GCTCTTC	2 cut(s)	62, 552
SatI	GCNGC	4 cut(s)	53, 102, 305, 503
Sau3AI	GATC	5 cut(s)	116, 186, 485, 489, 558
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	3 cut(s)	308, 315, 425
ScrFI	CCNGG	6 cut(s)	49, 62, 226, 245, 256, 470
SduI	GDGCHC	5 cut(s)	44, 114, 231, 252, 427
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	1 cut(s)	280
SsiI	CCGC	5 cut(s)	45, 52, 99, 102, 265
StyD4I	CCNGG	6 cut(s)	47, 60, 224, 243, 254, 468
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	1 cut(s)	381
TaiI	ACGT	2 cut(s)	30, 132
TaqI	TCGA	2 cut(s)	198, 488
TasI	AATT	1 cut(s)	280
TauI	GCSGC	2 cut(s)	55, 104
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	2 cut(s)	304, 502
Tsp45I	GTSAC	1 cut(s)	28
VpaK11BI	GGWCC	1 cut(s)	96
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmiI	GTMKAC	1 cut(s)	198
XmnI	GAANNNNTTC	1 cut(s)	188

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.