Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0015171

Physical Location & Seq

Genomic Coordinates Forward (+)

2109426 .. 2112168

Gene Structure 2743 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1028900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 852 bp

ATGTTCAGGAACCAATACGACACCGACGTGACGACATGGAGCCCCGCCGGGCGGCTCTTCCAGGTGGAGTACGCCATGGAGGCAGTCAAGCAAGGGTCCGCCGCCATTGGGCTCCGATCCAAAACCCACGTGGTTTTGGCTTGCGTCAACAAGGCCAACTCCGAGCTCTCATCTCACCAGAAGAAGATCTTCAAGGTCGACGACCATATCGGCGTTGCCATTGCCGGGCTTACAGCCGACGGCCGGGTGCTCTCCCGGTACATGCGGTCGGAGGCCATAAATTACAACTACACTTACGAGTCGCAGCTCCCCGTAGGTCGACTCGTTGTTCAGCTCGCCGATAAGGCTCAGGTCTGTACCCAGCGCTCATGGAAGCGACCGTATGGTGTTGGACTATTAGTAGGTGGGTTGGATGAGTCTGGAGCACACCTATATTACAACTGCCCAAGTGGAAACTACTTTGAATACCAGGCATTTGCAATAGGGTCTCGCTCACAAGCTGCAAAGACATACTTGGAACGCAGGTTTGAGAACTTCACAGGCTCTTCAAGGGAGGATCTGATCAAGGATGCCCTCATTGCAACTAGGGAAACCTTGCAGGGAGAAAAACTTAGAAGTTCCATATGCACAATTGCTGTGGTAGGAGTTGGGGAGCCATTCCATATATTGGATCAAGACACCGTCCAGAAGTTGATCGATGCATTTGAGATCGTGCAGGATGAGGCTCCTGCTGCTGAAGCAGCTGAACCCGATGCTGGTGCTGAGCCTGCTGCAGCTGCAGAAGAGGGTGAGGGTGCTGGCGCTGACCAGGGTGCTGCTCCCGAACCAGATGTAGCTCCGATGGATATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

284

Amino Acids

30.7

Weight (kDa)

4.94

Isoelectric Point (pI)

47.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	6 - 28	8.5e-14	Proteasome subunit A N-terminal signature
Proteasome	PF00227	29 - 214	1.8e-54	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0015171)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G47250 AT5G42790
fragaria_vesca	FvH4_2g39570
malus_domestica	MD08G1028900.v1.1
prunus_persica	Prupe.1G376700_v2.0.a1
pyrus_communis	pycom08g02270 pycom15g02100
rosa_chinensis	RchiOBHm_Chr6g0301351
rosa_laevigata	RLG00000011258
rosa_roxburghii	Rroxscaffold_7G00166890
rosa_rugosa	Rorug06G0303900
rosa_samantha	Rh6AG417500 Rh6BG424200 Rh6CG431300 Rh6DG417200
rosa_wichuraiana	Rw6G036130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	513
AccB7I	CCANNNNNTGG	1 cut(s)	667
AccI	GTMKAC	2 cut(s)	198, 319
AciI	CCGC	5 cut(s)	45, 52, 99, 102, 265
AclWI	GGATC	3 cut(s)	111, 564, 678
AcoI	YGGCCR	1 cut(s)	241
AcuI	CTGAAG	1 cut(s)	756
AcvI	CACGTG	1 cut(s)	130
AfaI	GTAC	3 cut(s)	71, 260, 358
AfeI	AGCGCT	1 cut(s)	365
AfiI	CCNNNNNNNGG	6 cut(s)	51, 108, 225, 243, 667, 755
AgsI	TTSAA	3 cut(s)	193, 464, 549
AjiI	CACGTC	1 cut(s)	28
AjnI	CCWGG	3 cut(s)	60, 468, 807
AleI	CACNNNNGTG	1 cut(s)	26
AluBI	AGCT	7 cut(s)	166, 307, 334, 500, 743, 776, 836
AluI	AGCT	7 cut(s)	166, 307, 334, 500, 743, 776, 836
Alw21I	GWGCWC	3 cut(s)	168, 252, 427
Alw26I	GTCTC	1 cut(s)	492
AlwI	GGATC	3 cut(s)	111, 564, 678
Aor51HI	AGCGCT	1 cut(s)	365
AoxI	GGCC	3 cut(s)	153, 241, 273
ApeKI	GCWGC	8 cut(s)	304, 500, 731, 740, 770, 773, 776, 815
Asp700I	GAANNNNTTC	1 cut(s)	188
AspLEI	GCGC	2 cut(s)	366, 803
AspS9I	GGNCC	1 cut(s)	96
AsuC2I	CCSGG	4 cut(s)	49, 226, 245, 256
AsuHPI	GGTGA	2 cut(s)	167, 800
AvaII	GGWCC	1 cut(s)	96
BanII	GRGCYC	3 cut(s)	44, 114, 168
BbrPI	CACGTG	1 cut(s)	130
Bbv12I	GWGCWC	3 cut(s)	168, 252, 427
BbvI	GCAGC	8 cut(s)	316, 487, 718, 752, 757, 763, 785, 802
BccI	CCATC	1 cut(s)	835
BceAI	ACGGC	1 cut(s)	256
BcgI	CGANNNNNNTGC	2 cut(s)	740, 774
BciT130I	CCWGG	3 cut(s)	62, 470, 809
BclI	TGATCA	1 cut(s)	561
BcnI	CCSGG	4 cut(s)	49, 226, 245, 256
BcoDI	GTCTC	1 cut(s)	492
BfaI	CTAG	1 cut(s)	585
BfmI	CTRYAG	2 cut(s)	771, 777
BfoI	RGCGCY	2 cut(s)	367, 804
BfuAI	ACCTGC	1 cut(s)	513
BglI	GCCNNNNNGGC	2 cut(s)	80, 344
BglII	AGATCT	1 cut(s)	186
BlpI	GCTNAGC	1 cut(s)	762
Bme1390I	CCNGG	7 cut(s)	49, 62, 226, 245, 256, 470, 809
Bme18I	GGWCC	1 cut(s)	96
BmgBI	CACGTC	1 cut(s)	28
BmgT120I	GGNCC	1 cut(s)	96
BmiI	GGNNCC	6 cut(s)	11, 41, 97, 113, 654, 726
BmrFI	CCNGG	7 cut(s)	49, 62, 226, 245, 256, 470, 809
BmsI	GCATC	3 cut(s)	559, 688, 742
BpmI	CTGGAG	1 cut(s)	441
Bpu10I	CCTNAGC	1 cut(s)	348
Bpu1102I	GCTNAGC	1 cut(s)	762
BpuMI	CCSGG	4 cut(s)	49, 226, 245, 256
Bsa29I	ATCGAT	1 cut(s)	696
BsaAI	YACGTR	1 cut(s)	130
BsaI	GGTCTC	1 cut(s)	492
BsaJI	CCNNGG	2 cut(s)	75, 808
Bsc4I	CCNNNNNNNGG	6 cut(s)	51, 108, 225, 243, 667, 755
Bse3DI	GCAATG	2 cut(s)	219, 576
BseBI	CCWGG	3 cut(s)	62, 470, 809
BseCI	ATCGAT	1 cut(s)	696
BseDI	CCNNGG	2 cut(s)	75, 808
BseGI	GGATG	3 cut(s)	418, 574, 724
BseLI	CCNNNNNNNGG	6 cut(s)	51, 108, 225, 243, 667, 755
BseMI	GCAATG	2 cut(s)	219, 576
BseMII	CTCAG	2 cut(s)	362, 753
BseX3I	CGGCCG	1 cut(s)	241
BseXI	GCAGC	8 cut(s)	316, 487, 718, 752, 757, 763, 785, 802
BseYI	CCCAGC	1 cut(s)	360
BsgI	GTGCAG	1 cut(s)	734
Bsh1285I	CGRYCG	3 cut(s)	244, 269, 380
BshFI	GGCC	3 cut(s)	155, 243, 275
BshVI	ATCGAT	1 cut(s)	696
BsiEI	CGRYCG	3 cut(s)	244, 269, 380
BsiHKAI	GWGCWC	3 cut(s)	168, 252, 427
BsiSI	CCGG	4 cut(s)	48, 225, 244, 256
BslI	CCNNNNNNNGG	6 cut(s)	51, 108, 225, 243, 667, 755
BsmAI	GTCTC	1 cut(s)	492
BsnI	GGCC	3 cut(s)	155, 243, 275
Bso31I	GGTCTC	1 cut(s)	492
Bsp1286I	GDGCHC	5 cut(s)	44, 114, 168, 252, 427
Bsp143I	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
Bsp1720I	GCTNAGC	1 cut(s)	762
Bsp19I	CCATGG	1 cut(s)	75
BspACI	CCGC	5 cut(s)	45, 52, 99, 102, 265
BspANI	GGCC	3 cut(s)	155, 243, 275
BspCNI	CTCAG	2 cut(s)	361, 754
BspDI	ATCGAT	1 cut(s)	696
BspLI	GGNNCC	6 cut(s)	11, 41, 97, 113, 654, 726
BspMAI	CTGCAG	2 cut(s)	775, 781
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	3 cut(s)	111, 564, 678
BspQI	GCTCTTC	2 cut(s)	62, 550
BspTNI	GGTCTC	1 cut(s)	492
BsrDI	GCAATG	2 cut(s)	219, 576
BssECI	CCNNGG	2 cut(s)	75, 808
BssMI	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
BssT1I	CCWWGG	1 cut(s)	75
Bst2UI	CCWGG	3 cut(s)	62, 470, 809
Bst4CI	ACNGT	2 cut(s)	381, 682
Bst6I	CTCTTC	3 cut(s)	62, 550, 777
BstBAI	YACGTR	1 cut(s)	130
BstC8I	GCNNGC	4 cut(s)	142, 336, 768, 799
BstDEI	CTNAG	3 cut(s)	348, 611, 762
BstDSI	CCRYGG	1 cut(s)	75
BstF5I	GGATG	3 cut(s)	418, 574, 724
BstH2I	RGCGCY	2 cut(s)	367, 804
BstHHI	GCGC	2 cut(s)	366, 803
BstKTI	GATC	7 cut(s)	119, 189, 559, 564, 673, 696, 711
BstMAI	GTCTC	1 cut(s)	492
BstMBI	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
BstMCI	CGRYCG	3 cut(s)	244, 269, 380
BstMWI	GCNNNNNNNGC	8 cut(s)	80, 344, 578, 731, 737, 740, 767, 776
BstNI	CCWGG	3 cut(s)	62, 470, 809
BstNSI	RCATGY	1 cut(s)	265
BstSCI	CCNGG	7 cut(s)	47, 60, 224, 243, 254, 468, 807
BstSFI	CTRYAG	2 cut(s)	771, 777
BstV1I	GCAGC	8 cut(s)	316, 487, 718, 752, 757, 763, 785, 802
BstX2I	RGATCY	2 cut(s)	186, 556
BstYI	RGATCY	2 cut(s)	186, 556
BstZI	CGGCCG	1 cut(s)	241
Bsu15I	ATCGAT	1 cut(s)	696
BsuRI	GGCC	3 cut(s)	155, 243, 275
BsuTUI	ATCGAT	1 cut(s)	696
BtgI	CCRYGG	1 cut(s)	75
BtrI	CACGTC	1 cut(s)	28
BtsCI	GGATG	3 cut(s)	418, 574, 724
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	4 cut(s)	142, 336, 768, 799
CfoI	GCGC	2 cut(s)	366, 803
Cfr13I	GGNCC	1 cut(s)	96
ClaI	ATCGAT	1 cut(s)	696
CseI	GACGC	1 cut(s)	133
Csp6I	GTAC	3 cut(s)	70, 259, 357
CspCI	CAANNNNNGTGG	2 cut(s)	618, 653
CviAII	CATG	4 cut(s)	36, 76, 262, 369
CviQI	GTAC	3 cut(s)	70, 259, 357
DdeI	CTNAG	3 cut(s)	348, 611, 762
DpnI	GATC	7 cut(s)	118, 188, 558, 563, 672, 695, 710
DpnII	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
EaeI	YGGCCR	1 cut(s)	241
EagI	CGGCCG	1 cut(s)	241
Eam1104I	CTCTTC	3 cut(s)	62, 550, 777
EarI	CTCTTC	3 cut(s)	62, 550, 777
EciI	GGCGGA	1 cut(s)	88
Ecl136II	GAGCTC	1 cut(s)	166
EclXI	CGGCCG	1 cut(s)	241
Eco130I	CCWWGG	1 cut(s)	75
Eco24I	GRGCYC	3 cut(s)	44, 114, 168
Eco31I	GGTCTC	1 cut(s)	492
Eco47I	GGWCC	1 cut(s)	96
Eco47III	AGCGCT	1 cut(s)	365
Eco52I	CGGCCG	1 cut(s)	241
Eco53kI	GAGCTC	1 cut(s)	166
Eco57I	CTGAAG	1 cut(s)	756
Eco72I	CACGTG	1 cut(s)	130
EcoICRI	GAGCTC	1 cut(s)	166
EcoRII	CCWGG	3 cut(s)	60, 468, 807
EcoT14I	CCWWGG	1 cut(s)	75
EcoT22I	ATGCAT	1 cut(s)	703
EcoT38I	GRGCYC	3 cut(s)	44, 114, 168
ErhI	CCWWGG	1 cut(s)	75
FaeI	CATG	4 cut(s)	39, 79, 265, 372
FalI	AAGNNNNNCTT	4 cut(s)	173, 205, 497, 529
FatI	CATG	4 cut(s)	35, 75, 261, 368
FauI	CCCGC	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	623
FbaI	TGATCA	1 cut(s)	561
FblI	GTMKAC	2 cut(s)	198, 319
FokI	GGATG	3 cut(s)	425, 581, 731
FriOI	GRGCYC	3 cut(s)	44, 114, 168
FspBI	CTAG	1 cut(s)	585
GlaI	GCGC	2 cut(s)	365, 802
GsaI	CCCAGC	1 cut(s)	364
GsuI	CTGGAG	1 cut(s)	441
HaeII	RGCGCY	2 cut(s)	367, 804
HaeIII	GGCC	3 cut(s)	155, 243, 275
HapII	CCGG	4 cut(s)	48, 225, 244, 256
HgaI	GACGC	1 cut(s)	133
HhaI	GCGC	2 cut(s)	366, 803
Hin1II	CATG	4 cut(s)	39, 79, 265, 372
Hin6I	GCGC	2 cut(s)	364, 801
HinP1I	GCGC	2 cut(s)	364, 801
HincII	GTYRAC	3 cut(s)	148, 199, 320
HindII	GTYRAC	3 cut(s)	148, 199, 320
HinfI	GANTC	3 cut(s)	299, 321, 416
HpaII	CCGG	4 cut(s)	48, 225, 244, 256
HphI	GGTGA	2 cut(s)	167, 800
Hpy166II	GTNNAC	3 cut(s)	148, 199, 320
Hpy188I	TCNGA	5 cut(s)	116, 163, 271, 561, 840
Hpy188III	TCNNGA	5 cut(s)	7, 420, 674, 685, 821
Hpy8I	GTNNAC	3 cut(s)	148, 199, 320
Hpy99I	CGWCG	3 cut(s)	29, 203, 242
HpyCH4III	ACNGT	2 cut(s)	381, 682
HpyCH4IV	ACGT	2 cut(s)	27, 129
HpyCH4V	TGCA	9 cut(s)	479, 503, 581, 598, 627, 701, 715, 773, 779
HpyF10VI	GCNNNNNNNGC	8 cut(s)	80, 344, 578, 731, 737, 740, 767, 776
HpyF3I	CTNAG	3 cut(s)	348, 611, 762
HpySE526I	ACGT	2 cut(s)	27, 129
Hsp92II	CATG	4 cut(s)	39, 79, 265, 372
HspAI	GCGC	2 cut(s)	364, 801
Ksp22I	TGATCA	1 cut(s)	561
Kzo9I	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
LguI	GCTCTTC	2 cut(s)	62, 550
LmnI	GCTCC	8 cut(s)	39, 117, 312, 422, 652, 730, 823, 841
Lsp1109I	GCAGC	8 cut(s)	316, 487, 718, 752, 757, 763, 785, 802
LweI	GCATC	3 cut(s)	559, 688, 742
MaeI	CTAG	1 cut(s)	585
MaeII	ACGT	2 cut(s)	27, 129
MaeIII	GTNAC	1 cut(s)	28
MalI	GATC	7 cut(s)	118, 188, 558, 563, 672, 695, 710
MboI	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
MboII	GAAGA	6 cut(s)	49, 181, 193, 196, 537, 794
MfeI	CAATTG	1 cut(s)	630
MflI	RGATCY	2 cut(s)	186, 556
MhlI	GDGCHC	5 cut(s)	44, 114, 168, 252, 427
MluCI	AATT	2 cut(s)	280, 630
MlyI	GAGTC	3 cut(s)	308, 315, 425
MmeI	TCCRAC	3 cut(s)	249, 370, 390
MnlI	CCTC	7 cut(s)	73, 265, 547, 584, 715, 778, 784
Mph1103I	ATGCAT	1 cut(s)	703
MroXI	GAANNNNTTC	1 cut(s)	188
MslI	CAYNNNNRTG	1 cut(s)	26
MspA1I	CMGCKG	2 cut(s)	743, 776
MspI	CCGG	4 cut(s)	48, 225, 244, 256
MspR9I	CCNGG	7 cut(s)	49, 62, 226, 245, 256, 470, 809
MunI	CAATTG	1 cut(s)	630
MvaI	CCWGG	3 cut(s)	62, 470, 809
MwoI	GCNNNNNNNGC	8 cut(s)	80, 344, 578, 731, 737, 740, 767, 776
NciI	CCSGG	4 cut(s)	49, 226, 245, 256
NcoI	CCATGG	1 cut(s)	75
NdeI	CATATG	1 cut(s)	623
NdeII	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
NlaIII	CATG	4 cut(s)	39, 79, 265, 372
NlaIV	GGNNCC	6 cut(s)	11, 41, 97, 113, 654, 726
NmuCI	GTSAC	1 cut(s)	28
NsiI	ATGCAT	1 cut(s)	703
NspI	RCATGY	1 cut(s)	265
OliI	CACNNNNGTG	1 cut(s)	26
PciSI	GCTCTTC	2 cut(s)	62, 550
PcsI	WCGNNNNNNNCGW	1 cut(s)	24
PdmI	GAANNNNTTC	1 cut(s)	188
PflFI	GACNNNGTC	1 cut(s)	680
PflMI	CCANNNNNTGG	1 cut(s)	667
PleI	GAGTC	3 cut(s)	307, 315, 424
PmaCI	CACGTG	1 cut(s)	130
PmlI	CACGTG	1 cut(s)	130
PpsI	GAGTC	3 cut(s)	307, 315, 424
Ppu21I	YACGTR	1 cut(s)	130
Psp124BI	GAGCTC	1 cut(s)	168
Psp6I	CCWGG	3 cut(s)	60, 468, 807
PspCI	CACGTG	1 cut(s)	130
PspFI	CCCAGC	1 cut(s)	360
PspGI	CCWGG	3 cut(s)	60, 468, 807
PspN4I	GGNNCC	6 cut(s)	11, 41, 97, 113, 654, 726
PspPI	GGNCC	1 cut(s)	96
PstI	CTGCAG	2 cut(s)	775, 781
PsuI	RGATCY	2 cut(s)	186, 556
PsyI	GACNNNGTC	1 cut(s)	680
PvuII	CAGCTG	2 cut(s)	743, 776
RsaI	GTAC	3 cut(s)	71, 260, 358
RsaNI	GTAC	3 cut(s)	70, 259, 357
RseI	CAYNNNNRTG	1 cut(s)	26
SacI	GAGCTC	1 cut(s)	168
SalI	GTCGAC	2 cut(s)	197, 318
SapI	GCTCTTC	2 cut(s)	62, 550
Sau3AI	GATC	7 cut(s)	116, 186, 556, 561, 670, 693, 708
Sau96I	GGNCC	1 cut(s)	96
SchI	GAGTC	3 cut(s)	308, 315, 425
ScrFI	CCNGG	7 cut(s)	49, 62, 226, 245, 256, 470, 809
SduI	GDGCHC	5 cut(s)	44, 114, 168, 252, 427
SfaNI	GCATC	3 cut(s)	559, 688, 742
SfcI	CTRYAG	2 cut(s)	771, 777
SinI	GGWCC	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	26
Sse9I	AATT	2 cut(s)	280, 630
SsiI	CCGC	5 cut(s)	45, 52, 99, 102, 265
SspMI	CTAG	1 cut(s)	585
SstI	GAGCTC	1 cut(s)	168
StyD4I	CCNGG	7 cut(s)	47, 60, 224, 243, 254, 468, 807
StyI	CCWWGG	1 cut(s)	75
TaaI	ACNGT	2 cut(s)	381, 682
TaiI	ACGT	2 cut(s)	30, 132
TaqI	TCGA	3 cut(s)	198, 319, 696
TasI	AATT	2 cut(s)	280, 630
TauI	GCSGC	2 cut(s)	55, 104
TseFI	GTSAC	1 cut(s)	28
TseI	GCWGC	8 cut(s)	304, 500, 731, 740, 770, 773, 776, 815
Tsp45I	GTSAC	1 cut(s)	28
Tth111I	GACNNNGTC	1 cut(s)	680
Van91I	CCANNNNNTGG	1 cut(s)	667
VpaK11BI	GGWCC	1 cut(s)	96
XceI	RCATGY	1 cut(s)	265
XcmI	CCANNNNNNNNNTGG	1 cut(s)	127
XmiI	GTMKAC	2 cut(s)	198, 319
XmnI	GAANNNNTTC	1 cut(s)	188
XspI	CTAG	1 cut(s)	585
Zsp2I	ATGCAT	1 cut(s)	703

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.