Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Forward (+)

45533423 .. 45543125

Gene Structure 9703 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0303900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1566 bp

ATGGCAAAGCATTTAGCTCTCGCCTTTTCTCTTTGCTTGCTTGTTCTCTTCCACGGCTGCTTAGCCAGACGCCAACAATCTCAGTCCAGCCAGCAAAATGAGTGCCAGCTGAACCAGATCCAAGCCCGCGAGCCTGACAACCGTATTGAGACTGAAGCAGGTCGGATTGAATCATGGGACTACAACCAGGATGACTTGCAGTGCGCTGGTGTCGCTGTTCAAAGAATCACCATTGAGCGTAATGGCCTTCACTTGCCTTCTTACACTAACACTCCAAGGCTTGCGTACGTTGTACAAGGTAGGGGTCATCTAGGGATGGTATTCCCTGGCTGTCCTGAGACATTTGAGGAGTCTGACCAATCTGATGAAGAACAACAGGGTCAGCAACAACAACGGCAAGGCCAACAACGGGGCCGCCAGCAACAGGGACGCCGACAAGGACAATTCGGACAGCAAGGCCAACAAGGACAACAAGACTTTGAACAGCTAGACCGACACCAGAGGGTGCGACGCGTCAAAGAAGGTGATGTTATCGCAATCCCCGCCGGAGTCACGACCTGGTCTCACAACGACGGTGATAGATCTCTTGTTTTTGTTACTCTTTTAGACATCGGCAATAACCACAACCAGCTTGACCAAAACCCAAGGCGATTCTATCTTGCTGGTAACCCACAAGATGAGTTCAACCAACAAGGCCAAAGCCAACGGAGGCGACAAGGACAACAAGGCCAAAGCCAATGGGGACAACAAGGACAACAAGGAAGGAGCAGACAGCAACAGCAGGGAACTAACAACAACAACATCTTTGCCGGCTTCGAGACAGAGCTCCTCGCCGATGCTCTCAACATCGACCAACAGACTGCCCAGCAGCTCCAGGGACAGAACGACAACAGGCCACAGATTGTTAGGGTTCAGGGACGTCTCGACTTTGTCGAGCCACCACGGTCACAGAGGGAGGAAAGACAACTGCAAGGACAACAAGGACAACAGGGACAGAATGGCCTTGAGGAGCTATTCTGCCACATGAAGATCAAGCAGAACATTGGCAAGCCTTCAATGGCTGACGTCTTCAGCCCGCAAGCCGGTCGCATCAGCACCCTCAACAGCTTTAGCATGCCTATTCTCAGGCACCTCCGCCTCAGTGCTGAGAGAGGCTTCTTGTACAACAATGCTATCCACAGCCCACACTGGAACTTGAATGCCCATGAGATAGTCTATGTCATCAGAGGTAGCGCCAGGGTTCAGGTGGTGAATGACAACGGCGAGACCATCTTGGACGACCAGGTCCGCCAGGGACAGCTCTTCGTCGTGCCACAGAACCACGCCGTGTTGCAAAAGGCCATGAGCAACGGATACGAGTACATTGCCTTCAAGACCGATGACAATGCCATGATGAACACTCTGGCTGGCAGGACCTCCGTCTTGCGGGCACTCCCCGACGTGGTCCTCGCCAACGCCTATCAGATGGACCGTGAGCAGGCAAGGAACCTCAAATACAACAGGCAGGAGACCCTTGCCTTGAGCTCCTCAAGGTCTTCCCAGTCACAGAGGTACTGGTGGGAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005839 GO:0005886 GO:0005911 GO:0006807 GO:0008150 GO:0008152 GO:0009056 GO:0009057 GO:0009506 GO:0016020 GO:0019538 GO:0019773 GO:0030054 GO:0030163 GO:0032991 GO:0042221 GO:0043170 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046685 GO:0050896 GO:0055044 GO:0071704 GO:0071944 GO:1901564 GO:1901565 GO:1901575 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko00220 ko01100 ko01110 ko01130 ko01230 ko03050 map00220 map01100 map01110 map01130 map01230 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

521

Amino Acids

59.46

Weight (kDa)

7.23

Isoelectric Point (pI)

63.92

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cupin_1	PF00190	41 - 224	1.4e-26	Cupin
Cupin_1	PF00190	347 - 494	5.9e-40	Cupin

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1283
AatII	GACGTC	2 cut(s)	922, 1068
Acc36I	ACCTGC	1 cut(s)	149
AccB1I	GGYRCC	1 cut(s)	1128
AccII	CGCG	2 cut(s)	129, 513
AciI	CCGC	7 cut(s)	127, 415, 543, 1076, 1135, 1288, 1426
AclWI	GGATC	1 cut(s)	112
AcuI	CTGAAG	2 cut(s)	174, 1054
AcyI	GRCGYC	4 cut(s)	70, 430, 919, 1065
AdeI	CACNNNGTG	1 cut(s)	1327
AfaI	GTAC	5 cut(s)	287, 294, 1163, 1361, 1553
AfiI	CCNNNNNNNGG	6 cut(s)	409, 424, 1082, 1425, 1441, 1477
AflIII	ACRYGT	1 cut(s)	511
AgsI	TTSAA	7 cut(s)	170, 221, 482, 685, 1056, 1198, 1372
AjiI	CACGTC	1 cut(s)	1441
AjnI	CCWGG	7 cut(s)	186, 325, 557, 873, 1235, 1281, 1290
Alw21I	GWGCWC	2 cut(s)	828, 1526
Alw26I	GTCTC	7 cut(s)	143, 332, 567, 812, 926, 1259, 1502
AlwI	GGATC	1 cut(s)	112
AoxI	GGCC	9 cut(s)	244, 400, 412, 457, 694, 727, 893, 1000, 1338
ApeKI	GCWGC	2 cut(s)	57, 868
AspLEI	GCGC	2 cut(s)	206, 1235
AspS9I	GGNCC	5 cut(s)	412, 1285, 1413, 1444, 1468
AsuHPI	GGTGA	4 cut(s)	220, 536, 587, 1261
AvaII	GGWCC	4 cut(s)	1285, 1413, 1444, 1468
BaeGI	GKGCMC	1 cut(s)	1432
BanI	GGYRCC	1 cut(s)	1128
BanII	GRGCYC	2 cut(s)	828, 1526
BarI	GAAGNNNNNNTAC	2 cut(s)	1352, 1384
BbsI	GAAGAC	2 cut(s)	1060, 1527
Bbv12I	GWGCWC	2 cut(s)	828, 1526
BbvI	GCAGC	2 cut(s)	44, 880
BccI	CCATC	3 cut(s)	310, 1277, 1459
BceAI	ACGGC	4 cut(s)	70, 410, 1276, 1310
BcgI	CGANNNNNNTGC	6 cut(s)	1067, 1101, 1346, 1367, 1380, 1401
BciT130I	CCWGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
BciVI	GTATCC	1 cut(s)	1346
BcoDI	GTCTC	7 cut(s)	143, 332, 567, 812, 926, 1259, 1502
BfaI	CTAG	2 cut(s)	311, 488
BfoI	RGCGCY	1 cut(s)	1236
BfuAI	ACCTGC	1 cut(s)	149
BfuI	GTATCC	1 cut(s)	1346
BglII	AGATCT	1 cut(s)	581
BisI	GCNGC	3 cut(s)	58, 415, 869
BlpI	GCTNAGC	1 cut(s)	61
BlsI	GCNGC	3 cut(s)	59, 416, 870
Bme1390I	CCNGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
Bme18I	GGWCC	4 cut(s)	1285, 1413, 1444, 1468
BmgBI	CACGTC	1 cut(s)	1441
BmgT120I	GGNCC	5 cut(s)	412, 1285, 1413, 1444, 1468
BmiI	GGNNCC	3 cut(s)	413, 1130, 1487
BmrFI	CCNGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
BmrI	ACTGGG	1 cut(s)	1534
BmsI	GCATC	2 cut(s)	826, 1098
BmuI	ACTGGG	1 cut(s)	1534
BoxI	GACNNNNGTC	1 cut(s)	1418
BpiI	GAAGAC	2 cut(s)	1060, 1527
BpmI	CTGGAG	1 cut(s)	857
Bpu1102I	GCTNAGC	1 cut(s)	61
BpuEI	CTTGAG	3 cut(s)	1025, 1513, 1540
BsaHI	GRCGYC	4 cut(s)	70, 430, 919, 1065
BsaI	GGTCTC	3 cut(s)	567, 1259, 1502
BsaJI	CCNNGG	8 cut(s)	52, 275, 325, 644, 874, 941, 1236, 1291
BsaXI	ACNNNNNCTCC	2 cut(s)	256, 286
Bsc4I	CCNNNNNNNGG	6 cut(s)	409, 424, 1082, 1425, 1441, 1477
Bse118I	RCCGGY	2 cut(s)	809, 1082
Bse1I	ACTGG	3 cut(s)	1193, 1540, 1559
Bse3DI	GCAATG	1 cut(s)	1362
BseBI	CCWGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
BseDI	CCNNGG	8 cut(s)	52, 275, 325, 644, 874, 941, 1236, 1291
BseGI	GGATG	2 cut(s)	196, 321
BseLI	CCNNNNNNNGG	6 cut(s)	409, 424, 1082, 1425, 1441, 1477
BseMI	GCAATG	1 cut(s)	1362
BseMII	CTCAG	5 cut(s)	95, 327, 1137, 1138, 1153
BseNI	ACTGG	3 cut(s)	1193, 1540, 1559
BseRI	GAGGAG	4 cut(s)	362, 818, 1022, 1516
BseSI	GKGCMC	1 cut(s)	1432
BseXI	GCAGC	2 cut(s)	44, 880
BseYI	CCCAGC	1 cut(s)	864
Bsh1236I	CGCG	2 cut(s)	129, 513
Bsh1285I	CGRYCG	1 cut(s)	1087
BshFI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 729, 895, 1002, 1340
BshNI	GGYRCC	1 cut(s)	1128
BsiEI	CGRYCG	1 cut(s)	1087
BsiHKAI	GWGCWC	2 cut(s)	828, 1526
BsiSI	CCGG	3 cut(s)	546, 810, 1083
BsiWI	CGTACG	1 cut(s)	285
BslFI	GGGAC	7 cut(s)	191, 441, 756, 891, 930, 1005, 1308
BslI	CCNNNNNNNGG	6 cut(s)	409, 424, 1082, 1425, 1441, 1477
BsmAI	GTCTC	7 cut(s)	143, 332, 567, 812, 926, 1259, 1502
BsmBI	CGTCTC	1 cut(s)	926
BsmFI	GGGAC	7 cut(s)	191, 441, 756, 891, 930, 1005, 1308
BsmI	GAATGC	1 cut(s)	1204
BsnI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 729, 895, 1002, 1340
Bso31I	GGTCTC	3 cut(s)	567, 1259, 1502
Bsp1286I	GDGCHC	3 cut(s)	828, 1432, 1526
Bsp1407I	TGTACA	2 cut(s)	292, 1161
Bsp143I	GATC	3 cut(s)	117, 581, 1029
Bsp1720I	GCTNAGC	1 cut(s)	61
BspACI	CCGC	7 cut(s)	127, 415, 543, 1076, 1135, 1288, 1426
BspANI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 729, 895, 1002, 1340
BspCNI	CTCAG	5 cut(s)	94, 328, 1137, 1138, 1152
BspFNI	CGCG	2 cut(s)	129, 513
BspLI	GGNNCC	3 cut(s)	413, 1130, 1487
BspMI	ACCTGC	1 cut(s)	149
BspPI	GGATC	1 cut(s)	112
BspQI	GCTCTTC	1 cut(s)	1307
BspT107I	GGYRCC	1 cut(s)	1128
BspTNI	GGTCTC	3 cut(s)	567, 1259, 1502
BsrDI	GCAATG	1 cut(s)	1362
BsrFI	RCCGGY	2 cut(s)	809, 1082
BsrGI	TGTACA	2 cut(s)	292, 1161
BsrI	ACTGG	3 cut(s)	1193, 1540, 1559
BssAI	RCCGGY	2 cut(s)	809, 1082
BssECI	CCNNGG	8 cut(s)	52, 275, 325, 644, 874, 941, 1236, 1291
BssMI	GATC	3 cut(s)	117, 581, 1029
BssNI	GRCGYC	4 cut(s)	70, 430, 919, 1065
BssT1I	CCWWGG	2 cut(s)	275, 644
Bst2UI	CCWGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
Bst4CI	ACNGT	4 cut(s)	143, 575, 945, 1472
Bst6I	CTCTTC	2 cut(s)	53, 1307
BstACI	GRCGYC	4 cut(s)	70, 430, 919, 1065
BstAUI	TGTACA	2 cut(s)	292, 1161
BstDEI	CTNAG	6 cut(s)	61, 81, 336, 1124, 1139, 1146
BstDSI	CCRYGG	2 cut(s)	52, 941
BstEII	GGTNACC	1 cut(s)	665
BstF5I	GGATG	2 cut(s)	196, 321
BstFNI	CGCG	2 cut(s)	129, 513
BstH2I	RGCGCY	1 cut(s)	1236
BstHHI	GCGC	2 cut(s)	206, 1235
BstKTI	GATC	3 cut(s)	120, 584, 1032
BstMAI	GTCTC	7 cut(s)	143, 332, 567, 812, 926, 1259, 1502
BstMBI	GATC	3 cut(s)	117, 581, 1029
BstMCI	CGRYCG	1 cut(s)	1087
BstMWI	GCNNNNNNNGC	2 cut(s)	212, 542
BstNI	CCWGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
BstNSI	RCATGY	1 cut(s)	1117
BstPAI	GACNNNNGTC	1 cut(s)	1418
BstPI	GGTNACC	1 cut(s)	665
BstSCI	CCNGG	7 cut(s)	186, 325, 557, 873, 1235, 1281, 1290
BstSLI	GKGCMC	1 cut(s)	1432
BstUI	CGCG	2 cut(s)	129, 513
BstV1I	GCAGC	2 cut(s)	44, 880
BstV2I	GAAGAC	2 cut(s)	1060, 1527
BstX2I	RGATCY	2 cut(s)	117, 581
BstYI	RGATCY	2 cut(s)	117, 581
BsuI	GTATCC	1 cut(s)	1346
BsuRI	GGCC	9 cut(s)	246, 402, 414, 459, 696, 729, 895, 1002, 1340
BtgI	CCRYGG	2 cut(s)	52, 941
BtrI	CACGTC	1 cut(s)	1441
BtsCI	GGATG	2 cut(s)	196, 321
BtsI	GCAGTG	1 cut(s)	206
BtsIMutI	CAGTG	3 cut(s)	206, 1147, 1186
BveI	ACCTGC	1 cut(s)	149
CfoI	GCGC	2 cut(s)	206, 1235
Cfr10I	RCCGGY	2 cut(s)	809, 1082
Cfr13I	GGNCC	5 cut(s)	412, 1285, 1413, 1444, 1468
CseI	GACGC	4 cut(s)	78, 438, 502, 519
CsiI	ACCWGGT	2 cut(s)	557, 1281
Csp6I	GTAC	5 cut(s)	286, 293, 1162, 1360, 1552
CviAII	CATG	6 cut(s)	174, 1024, 1114, 1205, 1342, 1390
CviQI	GTAC	5 cut(s)	286, 293, 1162, 1360, 1552
DdeI	CTNAG	6 cut(s)	61, 81, 336, 1124, 1139, 1146
DpnI	GATC	3 cut(s)	119, 583, 1031
DpnII	GATC	3 cut(s)	117, 581, 1029
DraIII	CACNNNGTG	1 cut(s)	1327
DrdI	GACNNNNNNGTC	1 cut(s)	1283
DseDI	GACNNNNNNGTC	1 cut(s)	1283
Eam1104I	CTCTTC	2 cut(s)	53, 1307
EarI	CTCTTC	2 cut(s)	53, 1307
EciI	GGCGGA	2 cut(s)	1124, 1277
Ecl136II	GAGCTC	2 cut(s)	826, 1524
Eco130I	CCWWGG	2 cut(s)	275, 644
Eco24I	GRGCYC	2 cut(s)	828, 1526
Eco31I	GGTCTC	3 cut(s)	567, 1259, 1502
Eco47I	GGWCC	4 cut(s)	1285, 1413, 1444, 1468
Eco53kI	GAGCTC	2 cut(s)	826, 1524
Eco57I	CTGAAG	2 cut(s)	174, 1054
Eco91I	GGTNACC	1 cut(s)	665
EcoICRI	GAGCTC	2 cut(s)	826, 1524
EcoO109I	RGGNCCY	1 cut(s)	1413
EcoO65I	GGTNACC	1 cut(s)	665
EcoRII	CCWGG	7 cut(s)	186, 325, 557, 873, 1235, 1281, 1290
EcoT14I	CCWWGG	2 cut(s)	275, 644
EcoT38I	GRGCYC	2 cut(s)	828, 1526
ErhI	CCWWGG	2 cut(s)	275, 644
Esp3I	CGTCTC	1 cut(s)	926
FaeI	CATG	6 cut(s)	177, 1027, 1117, 1208, 1345, 1393
FaiI	YATR	7 cut(s)	175, 1025, 1115, 1206, 1218, 1343, 1391
FaqI	GGGAC	7 cut(s)	191, 441, 756, 891, 930, 1005, 1308
FatI	CATG	6 cut(s)	173, 1023, 1113, 1204, 1341, 1389
FauI	CCCGC	4 cut(s)	134, 550, 1083, 1419
Fnu4HI	GCNGC	3 cut(s)	58, 415, 869
FokI	GGATG	2 cut(s)	203, 328
FriOI	GRGCYC	2 cut(s)	828, 1526
Fsp4HI	GCNGC	3 cut(s)	58, 415, 869
FspBI	CTAG	2 cut(s)	311, 488
GlaI	GCGC	2 cut(s)	205, 1234
GluI	GCNGC	3 cut(s)	58, 415, 869
GsaI	CCCAGC	1 cut(s)	868
GsuI	CTGGAG	1 cut(s)	857
HaeII	RGCGCY	1 cut(s)	1236
HaeIII	GGCC	9 cut(s)	246, 402, 414, 459, 696, 729, 895, 1002, 1340
HapII	CCGG	3 cut(s)	546, 810, 1083
HgaI	GACGC	4 cut(s)	78, 438, 502, 519
HhaI	GCGC	2 cut(s)	206, 1235
Hin1I	GRCGYC	4 cut(s)	70, 430, 919, 1065
Hin1II	CATG	6 cut(s)	177, 1027, 1117, 1208, 1345, 1393
Hin6I	GCGC	2 cut(s)	204, 1233
HinP1I	GCGC	2 cut(s)	204, 1233
HinfI	GANTC	5 cut(s)	170, 225, 350, 549, 651
HpaII	CCGG	3 cut(s)	546, 810, 1083
HphI	GGTGA	4 cut(s)	220, 536, 587, 1261
Hpy188I	TCNGA	6 cut(s)	165, 355, 364, 449, 1226, 1464
Hpy188III	TCNNGA	5 cut(s)	335, 553, 817, 923, 1372
Hpy99I	CGWCG	4 cut(s)	513, 575, 1310, 1442
HpyAV	CCTTC	6 cut(s)	257, 267, 515, 756, 1062, 1378
HpyCH4III	ACNGT	4 cut(s)	143, 575, 945, 1472
HpyCH4IV	ACGT	4 cut(s)	288, 919, 1065, 1440
HpyCH4V	TGCA	3 cut(s)	199, 970, 1333
HpyF10VI	GCNNNNNNNGC	2 cut(s)	212, 542
HpyF3I	CTNAG	6 cut(s)	61, 81, 336, 1124, 1139, 1146
HpySE526I	ACGT	4 cut(s)	288, 919, 1065, 1440
Hsp92I	GRCGYC	4 cut(s)	70, 430, 919, 1065
Hsp92II	CATG	6 cut(s)	177, 1027, 1117, 1208, 1345, 1393
HspAI	GCGC	2 cut(s)	204, 1233
KroI	GCCGGC	1 cut(s)	809
KroNI	GCCGGC	1 cut(s)	811
Kzo9I	GATC	3 cut(s)	117, 581, 1029
LguI	GCTCTTC	1 cut(s)	1307
LmnI	GCTCC	5 cut(s)	765, 831, 876, 1009, 1529
Lsp1109I	GCAGC	2 cut(s)	44, 880
LweI	GCATC	2 cut(s)	826, 1098
MabI	ACCWGGT	2 cut(s)	557, 1281
MaeI	CTAG	2 cut(s)	311, 488
MaeII	ACGT	4 cut(s)	288, 919, 1065, 1440
MaeIII	GTNAC	5 cut(s)	550, 595, 665, 945, 1542
MalI	GATC	3 cut(s)	119, 583, 1031
MboI	GATC	3 cut(s)	117, 581, 1029
MboII	GAAGA	6 cut(s)	40, 380, 1039, 1060, 1294, 1527
MflI	RGATCY	2 cut(s)	117, 581
MhlI	GDGCHC	3 cut(s)	828, 1432, 1526
MluCI	AATT	1 cut(s)	443
MluI	ACGCGT	1 cut(s)	511
MlyI	GAGTC	2 cut(s)	359, 558
MmeI	TCCRAC	1 cut(s)	143
MroNI	GCCGGC	1 cut(s)	809
MspA1I	CMGCKG	1 cut(s)	109
MspI	CCGG	3 cut(s)	546, 810, 1083
MspR9I	CCNGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
Mva1269I	GAATGC	1 cut(s)	1204
MvaI	CCWGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
MvnI	CGCG	2 cut(s)	129, 513
MwoI	GCNNNNNNNGC	2 cut(s)	212, 542
NaeI	GCCGGC	1 cut(s)	811
NdeII	GATC	3 cut(s)	117, 581, 1029
NgoMIV	GCCGGC	1 cut(s)	809
NlaIII	CATG	6 cut(s)	177, 1027, 1117, 1208, 1345, 1393
NlaIV	GGNNCC	3 cut(s)	413, 1130, 1487
NmuCI	GTSAC	3 cut(s)	550, 945, 1542
NspI	RCATGY	1 cut(s)	1117
PaeI	GCATGC	1 cut(s)	1117
PciSI	GCTCTTC	1 cut(s)	1307
PcsI	WCGNNNNNNNCGW	1 cut(s)	930
PctI	GAATGC	1 cut(s)	1204
PdiI	GCCGGC	1 cut(s)	811
PfeI	GAWTC	3 cut(s)	170, 225, 651
Pfl23II	CGTACG	1 cut(s)	285
PflFI	GACNNNGTC	4 cut(s)	559, 929, 1283, 1442
PkrI	GCNGC	3 cut(s)	59, 416, 870
PleI	GAGTC	2 cut(s)	358, 557
PpsI	GAGTC	2 cut(s)	358, 557
PpuMI	RGGWCCY	1 cut(s)	1413
PshAI	GACNNNNGTC	1 cut(s)	1418
Psp124BI	GAGCTC	2 cut(s)	828, 1526
Psp5II	RGGWCCY	1 cut(s)	1413
Psp6I	CCWGG	7 cut(s)	186, 325, 557, 873, 1235, 1281, 1290
PspEI	GGTNACC	1 cut(s)	665
PspFI	CCCAGC	1 cut(s)	864
PspGI	CCWGG	7 cut(s)	186, 325, 557, 873, 1235, 1281, 1290
PspLI	CGTACG	1 cut(s)	285
PspN4I	GGNNCC	3 cut(s)	413, 1130, 1487
PspPI	GGNCC	5 cut(s)	412, 1285, 1413, 1444, 1468
PspPPI	RGGWCCY	1 cut(s)	1413
PsrI	GAACNNNNNNTAC	2 cut(s)	1478, 1510
PsuI	RGATCY	2 cut(s)	117, 581
PsyI	GACNNNGTC	4 cut(s)	559, 929, 1283, 1442
PvuII	CAGCTG	1 cut(s)	109
RsaI	GTAC	5 cut(s)	287, 294, 1163, 1361, 1553
RsaNI	GTAC	5 cut(s)	286, 293, 1162, 1360, 1552
SacI	GAGCTC	2 cut(s)	828, 1526
SapI	GCTCTTC	1 cut(s)	1307
SatI	GCNGC	3 cut(s)	58, 415, 869
Sau3AI	GATC	3 cut(s)	117, 581, 1029
Sau96I	GGNCC	5 cut(s)	412, 1285, 1413, 1444, 1468
SchI	GAGTC	2 cut(s)	359, 558
ScrFI	CCNGG	7 cut(s)	188, 327, 559, 875, 1237, 1283, 1292
SduI	GDGCHC	3 cut(s)	828, 1432, 1526
SexAI	ACCWGGT	2 cut(s)	557, 1281
SfaNI	GCATC	2 cut(s)	826, 1098
SinI	GGWCC	4 cut(s)	1285, 1413, 1444, 1468
SmlI	CTYRAG	3 cut(s)	1004, 1519, 1528
SmoI	CTYRAG	3 cut(s)	1004, 1519, 1528
SphI	GCATGC	1 cut(s)	1117
Sse9I	AATT	1 cut(s)	443
SsiI	CCGC	7 cut(s)	127, 415, 543, 1076, 1135, 1288, 1426
SspMI	CTAG	2 cut(s)	311, 488
SstI	GAGCTC	2 cut(s)	828, 1526
StyD4I	CCNGG	7 cut(s)	186, 325, 557, 873, 1235, 1281, 1290
StyI	CCWWGG	2 cut(s)	275, 644
TaaI	ACNGT	4 cut(s)	143, 575, 945, 1472
TaiI	ACGT	4 cut(s)	291, 922, 1068, 1443
TaqI	TCGA	4 cut(s)	816, 849, 924, 933
TaqII	GACCGA	2 cut(s)	507, 1391
TasI	AATT	1 cut(s)	443
TatI	WGTACW	3 cut(s)	292, 1161, 1359
TauI	GCSGC	1 cut(s)	417
TfiI	GAWTC	3 cut(s)	170, 225, 651
TscAI	CASTG	3 cut(s)	206, 1147, 1193
TseFI	GTSAC	3 cut(s)	550, 945, 1542
TseI	GCWGC	2 cut(s)	57, 868
Tsp45I	GTSAC	3 cut(s)	550, 945, 1542
TspDTI	ATGAA	3 cut(s)	381, 1040, 1409
TspGWI	ACGGA	3 cut(s)	721, 1365, 1408
TspRI	CASTG	3 cut(s)	206, 1147, 1193
Tth111I	GACNNNGTC	4 cut(s)	559, 929, 1283, 1442
VpaK11BI	GGWCC	4 cut(s)	1285, 1413, 1444, 1468
XceI	RCATGY	1 cut(s)	1117
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1243
XspI	CTAG	2 cut(s)	311, 488
ZraI	GACGTC	2 cut(s)	920, 1066

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.