RLG00000010366

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000728
Physical Location & Seq
Forward (+)
1015056 .. 1016543
1488 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010366

Sequence Viewer

Length: 729 bp
ATGTCGATCGCGTTGGATAGGATAGGTGACGTCGCGCCCTCGTCTGGCTTCATGCACGGTGGGGCCATGTCGTTTGGCTTGCTATTCGAGTCGTCGCCGGGAGAGGATAGAGCTCCGGCCGTTGCGTCTTCCTCGTCGACTTCGACGTCGTCGTCTTCGATCGGGAAGAACAGCGACGTGTTGTTGGACGAAGGCGACGGGGAAAATGACGAGGCTCAGAGCTCGTATAATGGTCCTTTGGATATGATGGAGGCTTTGGAGGAGGTTTTGCCTATCAGGAGAGGCATCTCGAAGTTCTATAACTACAAATCCAAGTCCTTCACGAGTCTGGCAGATGTTTCAACTTCTTCCTCCATTAAAGAGATTGCGAAGCCAGATAATGCCTATACCAGGAAACGCAGGAACCTGCTCGCTTCGAATCTCATCTGGGACAAGAATCGGAATTCCCCACTGAGTTGTAGGGTTGGGATATCAAAGTCCTCAAAGAGAACAATCACCGCAAGTCAAAGCGCGTTGGCTTTGGCTGTGGCAATGTGCAGCTCGGAAACCAGTCCCAGTACAAGTGGTGATTCCAATTCAAGTTCCGTTACTCCTCCATCCTTCAATAAACTCCGAAATCACGTTGCTTGGCGATCATTATCCTTGGCTGATTTGCAAGAATGTGCCACTTCTGCAGCTGTAAATACCACTTCTCGCTTCTTTCCTTCAAAACCAAATTTACAGCTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

243

Amino Acids

25.74

Weight (kDa)

7.69

Isoelectric Point (pI)

64.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 145, 151
AatII GACGTC 2 cut(s) 33, 149
Acc36I ACCTGC 1 cut(s) 414
AccI GTMKAC 1 cut(s) 137
AccII CGCG 3 cut(s) 11, 35, 512
AciI CCGC 1 cut(s) 498
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 2 cut(s) 442, 715
AcyI GRCGYC 2 cut(s) 30, 146
AfaI GTAC 1 cut(s) 559
AfiI CCNNNNNNNGG 2 cut(s) 44, 390
AflIII ACRYGT 1 cut(s) 177
AgsI TTSAA 4 cut(s) 342, 579, 604, 708
AjiI CACGTC 1 cut(s) 178
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 5 cut(s) 113, 222, 540, 677, 724
AluI AGCT 5 cut(s) 113, 222, 540, 677, 724
Alw21I GWGCWC 2 cut(s) 115, 224
AoxI GGCC 2 cut(s) 63, 117
ApeKI GCWGC 2 cut(s) 537, 674
ApoI RAATTY 2 cut(s) 442, 715
AspLEI GCGC 2 cut(s) 37, 512
AspS9I GGNCC 2 cut(s) 63, 233
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 38, 487, 578
AsuII TTCGAA 1 cut(s) 416
AvaII GGWCC 1 cut(s) 233
BanII GRGCYC 2 cut(s) 115, 224
BauI CACGAG 1 cut(s) 322
BbsI GAAGAC 2 cut(s) 120, 147
Bbv12I GWGCWC 2 cut(s) 115, 224
BbvI GCAGC 2 cut(s) 549, 686
BccI CCATC 2 cut(s) 241, 604
BceAI ACGGC 1 cut(s) 104
BciT130I CCWGG 1 cut(s) 391
BcnI CCSGG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 672
BfuAI ACCTGC 1 cut(s) 414
BisI GCNGC 2 cut(s) 538, 675
BlsI GCNGC 2 cut(s) 539, 676
Bme1390I CCNGG 2 cut(s) 99, 391
Bme18I GGWCC 1 cut(s) 233
BmgBI CACGTC 1 cut(s) 178
BmgT120I GGNCC 2 cut(s) 63, 233
BmiI GGNNCC 2 cut(s) 64, 404
BmrFI CCNGG 2 cut(s) 99, 391
BmrI ACTGGG 1 cut(s) 549
BmsI GCATC 1 cut(s) 294
BmuI ACTGGG 1 cut(s) 549
BpiI GAAGAC 2 cut(s) 120, 147
Bpu14I TTCGAA 1 cut(s) 416
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 637
BsaHI GRCGYC 2 cut(s) 30, 146
BsaJI CCNNGG 1 cut(s) 642
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 390
Bse1I ACTGG 2 cut(s) 549, 555
Bse3DI GCAATG 1 cut(s) 537
Bse8I GATNNNNATC 1 cut(s) 637
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 642
BseGI GGATG 1 cut(s) 596
BseJI GATNNNNATC 1 cut(s) 637
BseLI CCNNNNNNNGG 2 cut(s) 44, 390
BseMI GCAATG 1 cut(s) 537
BseMII CTCAG 2 cut(s) 230, 443
BseNI ACTGG 2 cut(s) 549, 555
BseRI GAGGAG 2 cut(s) 275, 582
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 549, 686
BsgI GTGCAG 1 cut(s) 556
Bsh1236I CGCG 3 cut(s) 11, 35, 512
Bsh1285I CGRYCG 3 cut(s) 9, 120, 162
BshFI GGCC 2 cut(s) 65, 119
BsiEI CGRYCG 3 cut(s) 9, 120, 162
BsiHKAI GWGCWC 2 cut(s) 115, 224
BsiSI CCGG 2 cut(s) 98, 116
BslFI GGGAC 2 cut(s) 443, 537
BslI CCNNNNNNNGG 2 cut(s) 44, 390
BsmFI GGGAC 2 cut(s) 443, 537
BsnI GGCC 2 cut(s) 65, 119
Bsp119I TTCGAA 1 cut(s) 416
Bsp1286I GDGCHC 2 cut(s) 115, 224
Bsp143I GATC 3 cut(s) 6, 159, 632
BspACI CCGC 1 cut(s) 498
BspANI GGCC 2 cut(s) 65, 119
BspCNI CTCAG 2 cut(s) 229, 444
BspFNI CGCG 3 cut(s) 11, 35, 512
BspLI GGNNCC 2 cut(s) 64, 404
BspMAI CTGCAG 1 cut(s) 676
BspMI ACCTGC 1 cut(s) 414
BspT104I TTCGAA 1 cut(s) 416
BsrDI GCAATG 1 cut(s) 537
BsrI ACTGG 2 cut(s) 549, 555
BssECI CCNNGG 1 cut(s) 642
BssMI GATC 3 cut(s) 6, 159, 632
BssNI GRCGYC 2 cut(s) 30, 146
BssSI CACGAG 1 cut(s) 322
BssT1I CCWWGG 1 cut(s) 642
Bst2BI CACGAG 1 cut(s) 322
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 59
BstACI GRCGYC 2 cut(s) 30, 146
BstBI TTCGAA 1 cut(s) 416
BstC8I GCNNGC 2 cut(s) 80, 411
BstDEI CTNAG 2 cut(s) 216, 452
BstENI CCTNNNNNAGG 1 cut(s) 388
BstF5I GGATG 1 cut(s) 596
BstFNI CGCG 3 cut(s) 11, 35, 512
BstHHI GCGC 2 cut(s) 37, 512
BstKTI GATC 3 cut(s) 9, 162, 635
BstMBI GATC 3 cut(s) 6, 159, 632
BstMCI CGRYCG 3 cut(s) 9, 120, 162
BstMWI GCNNNNNNNGC 1 cut(s) 671
BstNI CCWGG 1 cut(s) 391
BstSCI CCNGG 2 cut(s) 97, 389
BstSFI CTRYAG 1 cut(s) 672
BstUI CGCG 3 cut(s) 11, 35, 512
BstV1I GCAGC 2 cut(s) 549, 686
BstV2I GAAGAC 2 cut(s) 120, 147
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 2 cut(s) 65, 119
BtrI CACGTC 1 cut(s) 178
BtsCI GGATG 1 cut(s) 596
BtsIMutI CAGTG 1 cut(s) 449
BveI ACCTGC 1 cut(s) 414
Cac8I GCNNGC 2 cut(s) 80, 411
CfoI GCGC 2 cut(s) 37, 512
Cfr13I GGNCC 2 cut(s) 63, 233
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 558
CviAII CATG 2 cut(s) 52, 67
CviQI GTAC 1 cut(s) 558
DdeI CTNAG 2 cut(s) 216, 452
DpnI GATC 3 cut(s) 8, 161, 634
DpnII GATC 3 cut(s) 6, 159, 632
DrdI GACNNNNNNGTC 2 cut(s) 145, 151
DseDI GACNNNNNNGTC 2 cut(s) 145, 151
EaeI YGGCCR 1 cut(s) 117
EagI CGGCCG 1 cut(s) 117
Ecl136II GAGCTC 2 cut(s) 113, 222
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 642
Eco24I GRGCYC 2 cut(s) 115, 224
Eco32I GATATC 1 cut(s) 471
Eco47I GGWCC 1 cut(s) 233
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 2 cut(s) 113, 222
EcoICRI GAGCTC 2 cut(s) 113, 222
EcoNI CCTNNNNNAGG 1 cut(s) 388
EcoRI GAATTC 1 cut(s) 442
EcoRII CCWGG 1 cut(s) 389
EcoRV GATATC 1 cut(s) 471
EcoT14I CCWWGG 1 cut(s) 642
EcoT38I GRGCYC 2 cut(s) 115, 224
ErhI CCWWGG 1 cut(s) 642
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 6 cut(s) 53, 68, 228, 245, 300, 387
FaqI GGGAC 2 cut(s) 443, 537
FatI CATG 2 cut(s) 51, 66
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 2 cut(s) 538, 675
FokI GGATG 1 cut(s) 583
FriOI GRGCYC 2 cut(s) 115, 224
Fsp4HI GCNGC 2 cut(s) 538, 675
GlaI GCGC 2 cut(s) 36, 511
GluI GCNGC 2 cut(s) 538, 675
HaeIII GGCC 2 cut(s) 65, 119
HapII CCGG 2 cut(s) 98, 116
HgaI GACGC 1 cut(s) 114
HhaI GCGC 2 cut(s) 37, 512
Hin1I GRCGYC 2 cut(s) 30, 146
Hin1II CATG 2 cut(s) 55, 70
Hin6I GCGC 2 cut(s) 35, 510
HinP1I GCGC 2 cut(s) 35, 510
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 5 cut(s) 89, 325, 418, 436, 569
HpaII CCGG 2 cut(s) 98, 116
HphI GGTGA 3 cut(s) 38, 487, 578
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 5 cut(s) 219, 441, 544, 614, 728
Hpy188III TCNNGA 4 cut(s) 163, 277, 289, 322
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 8 cut(s) 35, 97, 139, 148, 151, 154, 179, 200
HpyAV CCTTC 4 cut(s) 185, 328, 610, 714
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 4 cut(s) 30, 146, 177, 621
HpyCH4V TGCA 4 cut(s) 55, 537, 655, 674
HpyF10VI GCNNNNNNNGC 1 cut(s) 671
HpyF3I CTNAG 2 cut(s) 216, 452
HpySE526I ACGT 4 cut(s) 30, 146, 177, 621
Hsp92I GRCGYC 2 cut(s) 30, 146
Hsp92II CATG 2 cut(s) 55, 70
HspAI GCGC 2 cut(s) 35, 510
Kzo9I GATC 3 cut(s) 6, 159, 632
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 549, 686
LweI GCATC 1 cut(s) 294
MaeII ACGT 4 cut(s) 30, 146, 177, 621
MaeIII GTNAC 2 cut(s) 26, 586
MalI GATC 3 cut(s) 8, 161, 634
MboI GATC 3 cut(s) 6, 159, 632
MboII GAAGA 4 cut(s) 120, 147, 178, 339
MhlI GDGCHC 2 cut(s) 115, 224
MluCI AATT 3 cut(s) 442, 574, 715
MlyI GAGTC 2 cut(s) 98, 334
MmeI TCCRAC 1 cut(s) 165
MseI TTAA 1 cut(s) 357
MspA1I CMGCKG 1 cut(s) 677
MspI CCGG 2 cut(s) 98, 116
MspR9I CCNGG 2 cut(s) 99, 391
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 3 cut(s) 11, 35, 512
MwoI GCNNNNNNNGC 1 cut(s) 671
NciI CCSGG 1 cut(s) 99
NdeII GATC 3 cut(s) 6, 159, 632
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 2 cut(s) 64, 404
NmuCI GTSAC 1 cut(s) 26
NspV TTCGAA 1 cut(s) 416
PcsI WCGNNNNNNNCGW 4 cut(s) 140, 143, 149, 155
PfeI GAWTC 3 cut(s) 418, 436, 569
PflFI GACNNNGTC 1 cut(s) 148
PkrI GCNGC 2 cut(s) 539, 676
Ple19I CGATCG 2 cut(s) 9, 162
PleI GAGTC 2 cut(s) 97, 333
PpsI GAGTC 2 cut(s) 97, 333
Psp124BI GAGCTC 2 cut(s) 115, 224
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PspN4I GGNNCC 2 cut(s) 64, 404
PspPI GGNCC 2 cut(s) 63, 233
PstI CTGCAG 1 cut(s) 676
PsyI GACNNNGTC 1 cut(s) 148
PvuI CGATCG 2 cut(s) 9, 162
PvuII CAGCTG 1 cut(s) 677
RsaI GTAC 1 cut(s) 559
RsaNI GTAC 1 cut(s) 558
SacI GAGCTC 2 cut(s) 115, 224
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 357
SatI GCNGC 2 cut(s) 538, 675
Sau3AI GATC 3 cut(s) 6, 159, 632
Sau96I GGNCC 2 cut(s) 63, 233
SchI GAGTC 2 cut(s) 98, 334
ScrFI CCNGG 2 cut(s) 99, 391
SduI GDGCHC 2 cut(s) 115, 224
SfaNI GCATC 1 cut(s) 294
SfcI CTRYAG 1 cut(s) 672
SfuI TTCGAA 1 cut(s) 416
SinI GGWCC 1 cut(s) 233
Sse9I AATT 3 cut(s) 442, 574, 715
SsiI CCGC 1 cut(s) 498
SstI GAGCTC 2 cut(s) 115, 224
StyD4I CCNGG 2 cut(s) 97, 389
StyI CCWWGG 1 cut(s) 642
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 4 cut(s) 33, 149, 180, 624
TaqI TCGA 7 cut(s) 5, 87, 137, 143, 158, 290, 416
TasI AATT 3 cut(s) 442, 574, 715
TatI WGTACW 1 cut(s) 557
TfiI GAWTC 3 cut(s) 418, 436, 569
Tru1I TTAA 1 cut(s) 357
Tru9I TTAA 1 cut(s) 357
TscAI CASTG 1 cut(s) 456
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 2 cut(s) 537, 674
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 40
TspGWI ACGGA 1 cut(s) 574
TspRI CASTG 1 cut(s) 456
Tth111I GACNNNGTC 1 cut(s) 148
VpaK11BI GGWCC 1 cut(s) 233
XagI CCTNNNNNAGG 1 cut(s) 388
XapI RAATTY 2 cut(s) 442, 715
XmiI GTMKAC 1 cut(s) 137
ZraI GACGTC 2 cut(s) 31, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.