pycom15g04790

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0000728
Physical Location & Seq
Forward (+)
2840403 .. 2841615
1213 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g04790.1

Sequence Viewer

Length: 840 bp
ATGAAAAGACAAACACCATGTGTCTCCTTCTCCGGCAAATCTAACGCGCTCTCGAAGATCCGCCTTCGCTCATCGATCCTATTTCTCCGATTAATGTCGATCGCATTGAATAGCGCCGCCGCCAGGATCGGCATTGCGCCGTCGTCTGGGTTCGCGCGTGGTGGGTTGATCTTCGATTCACAGGAAAACCGCCGGAGAGTTACCGCCGGTGAGGTTACGGTTTGTTCTTCGAGTTCGTCGTCGATTGGGAAGAACAGCGACGATGGATCGGAAGGCAACGACGGTGGCGAAAATGACGAGGCTCAGAGCTCGTATAAAGGTCCGTTGGATGTGATGAACGAGCTGGAGGAAGTTTTACCTGTGAGGAGAGGGATCTCGAAATACTACAACTACAAATCCAAGTCCTTTACGAGTCTAGCAGAAGCTTCATCTTCTTCCAACATTCAGGAGCTTGCAAAACCAGACAATGCCTACACCCGAAAACGCAGGAACCTTCTTGCTTCCAATCAGATGTGGGAGAAGAACCGAACCTCCTTCCCGCTGAGAAGCAACGGCGGCGGAATTTCAAAGAGACCGATTCCGTCCAGTCGAAGCGCATTGGCTTTGGCTGTCAAGTTAGGCAGCTGCTCGGAAAGCAGTACTAGTAGCGCAAGCGAGGATTCCAATTCGAGCTCAAATCCAACGTCGCCGCGGCCGCCTCTCCCACCGGGTTACGCCTGTCCATTAGGAAGTTATGCAGCTTGGAGATCGTATTCATTGGCTGATCTGCAAGAATGTACCGCTGCTACTACTGTAAATAGTTCGCGTTTCTCGGCGGCCACCACTAAACCGAACGTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

280

Amino Acids

29.73

Weight (kDa)

9.65

Isoelectric Point (pI)

71.19

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 5 cut(s) 47, 155, 157, 691, 805
AclWI GGATC 5 cut(s) 52, 70, 134, 274, 380
AcoI YGGCCR 2 cut(s) 692, 816
AcsI RAATTY 1 cut(s) 561
AdeI CACNNNGTG 1 cut(s) 20
AfaI GTAC 2 cut(s) 640, 778
AfiI CCNNNNNNNGG 2 cut(s) 123, 146
AflIII ACRYGT 1 cut(s) 834
AgsI TTSAA 2 cut(s) 109, 567
AhlI ACTAGT 1 cut(s) 641
AjnI CCWGG 1 cut(s) 122
AloI GAACNNNNNNTCC 2 cut(s) 515, 547
AluBI AGCT 7 cut(s) 309, 343, 425, 451, 624, 672, 740
AluI AGCT 7 cut(s) 309, 343, 425, 451, 624, 672, 740
Alw21I GWGCWC 2 cut(s) 311, 674
Alw26I GTCTC 2 cut(s) 28, 565
AlwI GGATC 5 cut(s) 52, 70, 134, 274, 380
AoxI GGCC 2 cut(s) 692, 816
ApeKI GCWGC 4 cut(s) 621, 624, 737, 782
ApoI RAATTY 1 cut(s) 561
ArsI GACNNNNNNTTYG 2 cut(s) 668, 700
AseI ATTAAT 1 cut(s) 92
AspLEI GCGC 6 cut(s) 49, 116, 139, 157, 596, 650
AspS9I GGNCC 1 cut(s) 320
AsuC2I CCSGG 1 cut(s) 708
AsuHPI GGTGA 1 cut(s) 221
AvaII GGWCC 1 cut(s) 320
BanII GRGCYC 2 cut(s) 311, 674
Bbv12I GWGCWC 2 cut(s) 311, 674
BbvI GCAGC 4 cut(s) 611, 633, 749, 769
BccI CCATC 1 cut(s) 257
BceAI ACGGC 2 cut(s) 124, 568
BciT130I CCWGG 1 cut(s) 124
BcnI CCSGG 1 cut(s) 708
BcoDI GTCTC 2 cut(s) 28, 565
BcuI ACTAGT 1 cut(s) 641
BfaI CTAG 2 cut(s) 416, 642
BfoI RGCGCY 1 cut(s) 117
BmcAI AGTACT 1 cut(s) 640
Bme1390I CCNGG 2 cut(s) 124, 708
Bme18I GGWCC 1 cut(s) 320
BmgT120I GGNCC 1 cut(s) 320
BmiI GGNNCC 1 cut(s) 491
BmrFI CCNGG 2 cut(s) 124, 708
BpmI CTGGAG 1 cut(s) 365
BpuMI CCSGG 1 cut(s) 708
Bsa29I ATCGAT 1 cut(s) 74
BsaI GGTCTC 1 cut(s) 565
BsaJI CCNNGG 1 cut(s) 689
BsaXI ACNNNNNCTCC 2 cut(s) 515, 545
Bsc4I CCNNNNNNNGG 2 cut(s) 123, 146
Bse118I RCCGGY 1 cut(s) 206
Bse1I ACTGG 1 cut(s) 585
Bse3DI GCAATG 1 cut(s) 132
BseBI CCWGG 1 cut(s) 124
BseCI ATCGAT 1 cut(s) 74
BseDI CCNNGG 1 cut(s) 689
BseGI GGATG 1 cut(s) 334
BseLI CCNNNNNNNGG 2 cut(s) 123, 146
BseMI GCAATG 1 cut(s) 132
BseMII CTCAG 2 cut(s) 317, 533
BseNI ACTGG 1 cut(s) 585
BseRI GAGGAG 1 cut(s) 379
BseX3I CGGCCG 1 cut(s) 692
BseXI GCAGC 4 cut(s) 611, 633, 749, 769
Bsh1236I CGCG 5 cut(s) 47, 155, 157, 691, 805
Bsh1285I CGRYCG 2 cut(s) 102, 695
BshFI GGCC 2 cut(s) 694, 818
BshVI ATCGAT 1 cut(s) 74
BsiEI CGRYCG 2 cut(s) 102, 695
BsiHKAI GWGCWC 2 cut(s) 311, 674
BsiSI CCGG 4 cut(s) 33, 193, 207, 707
BslI CCNNNNNNNGG 2 cut(s) 123, 146
BsmAI GTCTC 2 cut(s) 28, 565
BsnI GGCC 2 cut(s) 694, 818
Bso31I GGTCTC 1 cut(s) 565
Bsp1286I GDGCHC 2 cut(s) 311, 674
Bsp143I GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
BspANI GGCC 2 cut(s) 694, 818
BspCNI CTCAG 2 cut(s) 316, 534
BspDI ATCGAT 1 cut(s) 74
BspFNI CGCG 5 cut(s) 47, 155, 157, 691, 805
BspLI GGNNCC 1 cut(s) 491
BspPI GGATC 5 cut(s) 52, 70, 134, 274, 380
BspTNI GGTCTC 1 cut(s) 565
BsrDI GCAATG 1 cut(s) 132
BsrFI RCCGGY 1 cut(s) 206
BsrI ACTGG 1 cut(s) 585
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 1 cut(s) 689
BssMI GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
Bst2UI CCWGG 1 cut(s) 124
Bst4CI ACNGT 3 cut(s) 220, 284, 793
BstC8I GCNNGC 2 cut(s) 453, 652
BstDEI CTNAG 2 cut(s) 303, 542
BstDSI CCRYGG 1 cut(s) 689
BstF5I GGATG 1 cut(s) 334
BstFNI CGCG 5 cut(s) 47, 155, 157, 691, 805
BstH2I RGCGCY 1 cut(s) 117
BstHHI GCGC 6 cut(s) 49, 116, 139, 157, 596, 650
BstKTI GATC 9 cut(s) 60, 78, 102, 129, 171, 269, 375, 749, 766
BstMAI GTCTC 2 cut(s) 28, 565
BstMBI GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
BstMCI CGRYCG 2 cut(s) 102, 695
BstMWI GCNNNNNNNGC 3 cut(s) 555, 633, 694
BstNI CCWGG 1 cut(s) 124
BstSCI CCNGG 2 cut(s) 122, 706
BstUI CGCG 5 cut(s) 47, 155, 157, 691, 805
BstV1I GCAGC 4 cut(s) 611, 633, 749, 769
BstX2I RGATCY 2 cut(s) 57, 372
BstYI RGATCY 2 cut(s) 57, 372
BstZI CGGCCG 1 cut(s) 692
Bsu15I ATCGAT 1 cut(s) 74
BsuRI GGCC 2 cut(s) 694, 818
BsuTUI ATCGAT 1 cut(s) 74
BtgI CCRYGG 1 cut(s) 689
BtsCI GGATG 1 cut(s) 334
Cac8I GCNNGC 2 cut(s) 453, 652
CciNI GCGGCCGC 1 cut(s) 692
CfoI GCGC 6 cut(s) 49, 116, 139, 157, 596, 650
Cfr10I RCCGGY 1 cut(s) 206
Cfr13I GGNCC 1 cut(s) 320
Cfr42I CCGCGG 1 cut(s) 692
ClaI ATCGAT 1 cut(s) 74
Csp6I GTAC 2 cut(s) 639, 777
CspCI CAANNNNNGTGG 2 cut(s) 265, 300
CviAII CATG 1 cut(s) 18
CviQI GTAC 2 cut(s) 639, 777
DdeI CTNAG 2 cut(s) 303, 542
DpnI GATC 9 cut(s) 59, 77, 101, 128, 170, 268, 374, 748, 765
DpnII GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
DraIII CACNNNGTG 1 cut(s) 20
EaeI YGGCCR 2 cut(s) 692, 816
EagI CGGCCG 1 cut(s) 692
EciI GGCGGA 2 cut(s) 50, 573
Ecl136II GAGCTC 2 cut(s) 309, 672
EclXI CGGCCG 1 cut(s) 692
Eco24I GRGCYC 2 cut(s) 311, 674
Eco31I GGTCTC 1 cut(s) 565
Eco47I GGWCC 1 cut(s) 320
Eco52I CGGCCG 1 cut(s) 692
Eco53kI GAGCTC 2 cut(s) 309, 672
EcoICRI GAGCTC 2 cut(s) 309, 672
EcoRII CCWGG 1 cut(s) 122
EcoT38I GRGCYC 2 cut(s) 311, 674
FaeI CATG 1 cut(s) 21
FaiI YATR 3 cut(s) 19, 315, 735
FatI CATG 1 cut(s) 17
FauI CCCGC 1 cut(s) 546
FokI GGATG 1 cut(s) 341
FriOI GRGCYC 2 cut(s) 311, 674
FspBI CTAG 2 cut(s) 416, 642
GlaI GCGC 6 cut(s) 48, 115, 138, 156, 595, 649
GsuI CTGGAG 1 cut(s) 365
HaeII RGCGCY 1 cut(s) 117
HaeIII GGCC 2 cut(s) 694, 818
HapII CCGG 4 cut(s) 33, 193, 207, 707
HhaI GCGC 6 cut(s) 49, 116, 139, 157, 596, 650
Hin1II CATG 1 cut(s) 21
Hin6I GCGC 6 cut(s) 47, 114, 137, 155, 594, 648
HinP1I GCGC 6 cut(s) 47, 114, 137, 155, 594, 648
HindIII AAGCTT 1 cut(s) 423
HinfI GANTC 4 cut(s) 176, 412, 577, 659
HpaII CCGG 4 cut(s) 33, 193, 207, 707
HphI GGTGA 1 cut(s) 221
Hpy188I TCNGA 5 cut(s) 89, 271, 306, 510, 631
Hpy188III TCNNGA 3 cut(s) 52, 376, 446
Hpy99I CGWCG 6 cut(s) 145, 241, 244, 263, 284, 688
HpyAV CCTTC 5 cut(s) 37, 74, 266, 503, 544
HpyCH4III ACNGT 3 cut(s) 220, 284, 793
HpyCH4IV ACGT 2 cut(s) 683, 834
HpyCH4V TGCA 3 cut(s) 455, 737, 769
HpyF10VI GCNNNNNNNGC 3 cut(s) 555, 633, 694
HpyF3I CTNAG 2 cut(s) 303, 542
HpySE526I ACGT 2 cut(s) 683, 834
Hsp92II CATG 1 cut(s) 21
HspAI GCGC 6 cut(s) 47, 114, 137, 155, 594, 648
KspI CCGCGG 1 cut(s) 692
Kzo9I GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
LmnI GCTCC 1 cut(s) 448
Lsp1109I GCAGC 4 cut(s) 611, 633, 749, 769
MaeI CTAG 2 cut(s) 416, 642
MaeII ACGT 2 cut(s) 683, 834
MaeIII GTNAC 3 cut(s) 199, 214, 710
MalI GATC 9 cut(s) 59, 77, 101, 128, 170, 268, 374, 748, 765
MboI GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
MboII GAAGA 7 cut(s) 67, 163, 219, 262, 423, 426, 532
MflI RGATCY 2 cut(s) 57, 372
MhlI GDGCHC 2 cut(s) 311, 674
MluCI AATT 2 cut(s) 561, 664
MlyI GAGTC 1 cut(s) 421
MmeI TCCRAC 3 cut(s) 306, 462, 704
MnlI CCTC 8 cut(s) 205, 292, 340, 357, 362, 541, 649, 708
MseI TTAA 1 cut(s) 92
MspA1I CMGCKG 4 cut(s) 541, 624, 691, 782
MspI CCGG 4 cut(s) 33, 193, 207, 707
MspR9I CCNGG 2 cut(s) 124, 708
MvaI CCWGG 1 cut(s) 124
MvnI CGCG 5 cut(s) 47, 155, 157, 691, 805
MwoI GCNNNNNNNGC 3 cut(s) 555, 633, 694
NciI CCSGG 1 cut(s) 708
NdeII GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
NlaIII CATG 1 cut(s) 21
NlaIV GGNNCC 1 cut(s) 491
NmeAIII GCCGAG 1 cut(s) 791
NotI GCGGCCGC 1 cut(s) 692
PcsI WCGNNNNNNNCGW 2 cut(s) 236, 285
PfeI GAWTC 3 cut(s) 176, 577, 659
Ple19I CGATCG 1 cut(s) 102
PleI GAGTC 1 cut(s) 420
PpsI GAGTC 1 cut(s) 420
PshBI ATTAAT 1 cut(s) 92
Psp124BI GAGCTC 2 cut(s) 311, 674
Psp6I CCWGG 1 cut(s) 122
PspGI CCWGG 1 cut(s) 122
PspN4I GGNNCC 1 cut(s) 491
PspPI GGNCC 1 cut(s) 320
PsuI RGATCY 2 cut(s) 57, 372
PvuI CGATCG 1 cut(s) 102
PvuII CAGCTG 1 cut(s) 624
RsaI GTAC 2 cut(s) 640, 778
RsaNI GTAC 2 cut(s) 639, 777
SacI GAGCTC 2 cut(s) 311, 674
SacII CCGCGG 1 cut(s) 692
SaqAI TTAA 1 cut(s) 92
Sau3AI GATC 9 cut(s) 57, 75, 99, 126, 168, 266, 372, 746, 763
Sau96I GGNCC 1 cut(s) 320
ScaI AGTACT 1 cut(s) 640
SchI GAGTC 1 cut(s) 421
ScrFI CCNGG 2 cut(s) 124, 708
SduI GDGCHC 2 cut(s) 311, 674
Sfr303I CCGCGG 1 cut(s) 692
SgrAI CRCCGGYG 1 cut(s) 206
SgrBI CCGCGG 1 cut(s) 692
SinI GGWCC 1 cut(s) 320
SpeI ACTAGT 1 cut(s) 641
Sse9I AATT 2 cut(s) 561, 664
SspMI CTAG 2 cut(s) 416, 642
SstI GAGCTC 2 cut(s) 311, 674
StyD4I CCNGG 2 cut(s) 122, 706
TaaI ACNGT 3 cut(s) 220, 284, 793
TaiI ACGT 2 cut(s) 686, 837
TaqI TCGA 9 cut(s) 53, 74, 98, 174, 230, 242, 377, 589, 668
TaqII GACCGA 1 cut(s) 589
TasI AATT 2 cut(s) 561, 664
TatI WGTACW 1 cut(s) 638
TauI GCSGC 7 cut(s) 119, 122, 558, 691, 694, 697, 818
TfiI GAWTC 3 cut(s) 176, 577, 659
Tru1I TTAA 1 cut(s) 92
Tru9I TTAA 1 cut(s) 92
TseI GCWGC 4 cut(s) 621, 624, 737, 782
TspDTI ATGAA 4 cut(s) 17, 350, 417, 744
TspGWI ACGGA 2 cut(s) 312, 570
VpaK11BI GGWCC 1 cut(s) 320
VspI ATTAAT 1 cut(s) 92
XapI RAATTY 1 cut(s) 561
XspI CTAG 2 cut(s) 416, 642
ZrmI AGTACT 1 cut(s) 640
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.