Rh7DG193900

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0000728
Physical Location & Seq
Reverse (-)
18124643 .. 18124930
288 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG193900.1

Sequence Viewer

Length: 288 bp
ATGTCTATTGCTTTGGACAGAAATGGATTTGGGAATGGTATGATCCCACGGTCCGGGAGATTCATCAATGGGATGCCTTGTATTTTGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGAGGTCCTCGTCGGTTGGTAATAACAGTGATGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGGTGAGGTTCAGAGCTCATTTAAAGGGCCTTTGGACACCATGGACCAGCTTGAGGAGGTTTTGCCTGTCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

95

Amino Acids

10.35

Weight (kDa)

4.29

Isoelectric Point (pI)

65.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 2 cut(s) 37, 123
AfiI CCNNNNNNNGG 2 cut(s) 53, 265
AluBI AGCT 3 cut(s) 150, 228, 262
AluI AGCT 3 cut(s) 150, 228, 262
Alw21I GWGCWC 1 cut(s) 230
AlwI GGATC 2 cut(s) 37, 123
Ama87I CYCGRG 1 cut(s) 151
AoxI GGCC 1 cut(s) 239
AspS9I GGNCC 4 cut(s) 51, 156, 239, 256
AsuC2I CCSGG 1 cut(s) 55
AsuHPI GGTGA 2 cut(s) 218, 227
AvaI CYCGRG 1 cut(s) 151
AvaII GGWCC 3 cut(s) 51, 156, 256
BanII GRGCYC 1 cut(s) 230
Bbv12I GWGCWC 1 cut(s) 230
BclI TGATCA 1 cut(s) 109
BcnI CCSGG 1 cut(s) 55
BfaI CTAG 1 cut(s) 144
Bme1390I CCNGG 1 cut(s) 55
Bme18I GGWCC 3 cut(s) 51, 156, 256
BmeT110I CYCGRG 1 cut(s) 151
BmgT120I GGNCC 4 cut(s) 51, 156, 239, 256
BmrFI CCNGG 1 cut(s) 55
BmsI GCATC 1 cut(s) 63
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BpuEI CTTGAG 1 cut(s) 284
BpuMI CCSGG 1 cut(s) 55
BsaBI GATNNNNATC 1 cut(s) 114
BsaJI CCNNGG 2 cut(s) 47, 252
Bsc4I CCNNNNNNNGG 2 cut(s) 53, 265
Bse8I GATNNNNATC 1 cut(s) 114
BseDI CCNNGG 2 cut(s) 47, 252
BseGI GGATG 1 cut(s) 78
BseJI GATNNNNATC 1 cut(s) 114
BseLI CCNNNNNNNGG 2 cut(s) 53, 265
BseRI GAGGAG 3 cut(s) 149, 224, 281
BshFI GGCC 1 cut(s) 241
BsiHKAI GWGCWC 1 cut(s) 230
BsiHKCI CYCGRG 1 cut(s) 151
BsiSI CCGG 1 cut(s) 54
BslI CCNNNNNNNGG 2 cut(s) 53, 265
BsnI GGCC 1 cut(s) 241
BsoBI CYCGRG 1 cut(s) 151
Bsp1286I GDGCHC 1 cut(s) 230
Bsp143I GATC 4 cut(s) 42, 87, 109, 115
Bsp19I CCATGG 1 cut(s) 252
BspANI GGCC 1 cut(s) 241
BspPI GGATC 2 cut(s) 37, 123
BssECI CCNNGG 2 cut(s) 47, 252
BssMI GATC 4 cut(s) 42, 87, 109, 115
BssT1I CCWWGG 1 cut(s) 252
Bst4CI ACNGT 2 cut(s) 51, 179
BstDSI CCRYGG 2 cut(s) 47, 252
BstF5I GGATG 1 cut(s) 78
BstKTI GATC 4 cut(s) 45, 90, 112, 118
BstMBI GATC 4 cut(s) 42, 87, 109, 115
BstSCI CCNGG 1 cut(s) 53
BsuRI GGCC 1 cut(s) 241
BtgI CCRYGG 2 cut(s) 47, 252
BtsCI GGATG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 184
Cfr13I GGNCC 4 cut(s) 51, 156, 239, 256
CpoI CGGWCCG 1 cut(s) 51
CspI CGGWCCG 1 cut(s) 51
CviAII CATG 1 cut(s) 253
CviJI RGCY 4 cut(s) 150, 228, 241, 262
CviKI_1 RGCY 4 cut(s) 150, 228, 241, 262
DpnI GATC 4 cut(s) 44, 89, 111, 117
DpnII GATC 4 cut(s) 42, 87, 109, 115
DraI TTTAAA 1 cut(s) 235
Ecl136II GAGCTC 1 cut(s) 228
Eco130I CCWWGG 1 cut(s) 252
Eco24I GRGCYC 1 cut(s) 230
Eco47I GGWCC 3 cut(s) 51, 156, 256
Eco53kI GAGCTC 1 cut(s) 228
Eco88I CYCGRG 1 cut(s) 151
EcoICRI GAGCTC 1 cut(s) 228
EcoO109I RGGNCCY 2 cut(s) 156, 239
EcoT14I CCWWGG 1 cut(s) 252
EcoT38I GRGCYC 1 cut(s) 230
ErhI CCWWGG 1 cut(s) 252
FaeI CATG 1 cut(s) 256
FaiI YATR 2 cut(s) 41, 254
FatI CATG 1 cut(s) 252
FbaI TGATCA 1 cut(s) 109
FokI GGATG 1 cut(s) 85
FriOI GRGCYC 1 cut(s) 230
FspBI CTAG 1 cut(s) 144
HaeIII GGCC 1 cut(s) 241
HapII CCGG 1 cut(s) 54
Hin1II CATG 1 cut(s) 256
HinfI GANTC 3 cut(s) 60, 140, 185
HpaII CCGG 1 cut(s) 54
HphI GGTGA 2 cut(s) 218, 227
Hpy188I TCNGA 2 cut(s) 202, 225
Hpy188III TCNNGA 1 cut(s) 113
Hpy99I CGWCG 3 cut(s) 123, 166, 202
HpyCH4III ACNGT 2 cut(s) 51, 179
Hsp92II CATG 1 cut(s) 256
Ksp22I TGATCA 1 cut(s) 109
Kzo9I GATC 4 cut(s) 42, 87, 109, 115
LpnPI CCDG 3 cut(s) 67, 98, 272
LweI GCATC 1 cut(s) 63
MaeI CTAG 1 cut(s) 144
MalI GATC 4 cut(s) 44, 89, 111, 117
MboI GATC 4 cut(s) 42, 87, 109, 115
MhlI GDGCHC 1 cut(s) 230
MlyI GAGTC 2 cut(s) 134, 194
MmeI TCCRAC 2 cut(s) 111, 180
MseI TTAA 1 cut(s) 234
MspI CCGG 1 cut(s) 54
MspR9I CCNGG 1 cut(s) 55
NciI CCSGG 1 cut(s) 55
NcoI CCATGG 1 cut(s) 252
NdeII GATC 4 cut(s) 42, 87, 109, 115
NlaIII CATG 1 cut(s) 256
PaeR7I CTCGAG 1 cut(s) 151
PcsI WCGNNNNNNNCGW 1 cut(s) 158
PfeI GAWTC 1 cut(s) 60
PfoI TCCNGGA 1 cut(s) 53
PleI GAGTC 2 cut(s) 134, 193
PpsI GAGTC 2 cut(s) 134, 193
PpuMI RGGWCCY 1 cut(s) 156
Psp124BI GAGCTC 1 cut(s) 230
Psp5II RGGWCCY 1 cut(s) 156
PspPI GGNCC 4 cut(s) 51, 156, 239, 256
PspPPI RGGWCCY 1 cut(s) 156
PspXI VCTCGAGB 1 cut(s) 151
Rsr2I CGGWCCG 1 cut(s) 51
RsrII CGGWCCG 1 cut(s) 51
SacI GAGCTC 1 cut(s) 230
SaqAI TTAA 1 cut(s) 234
Sau3AI GATC 4 cut(s) 42, 87, 109, 115
Sau96I GGNCC 4 cut(s) 51, 156, 239, 256
SchI GAGTC 2 cut(s) 134, 194
ScrFI CCNGG 1 cut(s) 55
SduI GDGCHC 1 cut(s) 230
SetI ASST 6 cut(s) 152, 158, 222, 230, 264, 273
SfaNI GCATC 1 cut(s) 63
Sfr274I CTCGAG 1 cut(s) 151
SinI GGWCC 3 cut(s) 51, 156, 256
SlaI CTCGAG 1 cut(s) 151
SmlI CTYRAG 2 cut(s) 151, 263
SmoI CTYRAG 2 cut(s) 151, 263
SspMI CTAG 1 cut(s) 144
SstI GAGCTC 1 cut(s) 230
StyD4I CCNGG 1 cut(s) 53
StyI CCWWGG 1 cut(s) 252
TaaI ACNGT 2 cut(s) 51, 179
TaqI TCGA 1 cut(s) 152
TfiI GAWTC 1 cut(s) 60
Tru1I TTAA 1 cut(s) 234
Tru9I TTAA 1 cut(s) 234
TscAI CASTG 1 cut(s) 184
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 184
VpaK11BI GGWCC 3 cut(s) 51, 156, 256
XhoI CTCGAG 1 cut(s) 151
XspI CTAG 1 cut(s) 144
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.