Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

17523473 .. 17526688

Gene Structure 3216 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1217500.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCAATCGCTCTACAGAGAAACGGCGGTGGCGGCAATAATATGAACCAACGGCCGAGGTTCATCCATGGGACGCCTTGCATCCCCATCTACAACTCGTCCGAAGGGTTTGCTCAAGATCGTCGTCTTGACCAGGAGGACTCTTGTAGCAGCTCGTCGTCTTCAGTTGGAATGAACAGCGACTCGTCTGATGGGTCGTCGGAGGGGGAGGAATCCGGTGAGACTGAGGTGCAGAGCTCGTTTAAAGGACCGTTGGACACCATGGACCAGCTCGAGGAGGTTTTGCCGGTCAAGAGAGGTATATCCAAGTTTTATAGTGGTAAATCAAAGTCCTTCACAAGCCTAGCAGATGTCTCGTCTGTTTCTTCTGTCAAGGAACTTGCAAAGCCAAAAAATCGTTATACCAAGAAGCGCAAGAATTTATTAGCCCAGAATTATTTTCAGGATAAAAACTGCAATGACTCTATGACGAATAATGGTGTTGTGATATCAAAGAGGCCAGCTGCTAACCCTAGTCGAGGATCGTTTATTATTGGGGAGACTTGGAGCAGCTCTCCTAGCTATAGCAACGGGGAGGGATCCAACTCCATTTCACCATCACCTTCTTCCTGTCTTCCACCTCTGCCTCCACACGGTAGACAATCACCTGATAATGATCCATCACCACCTCTTCCACGACGGAGTTCTCCTTGGCGATCATTCTCTCTTTCTGATCTGCAGTGCATTGCTGCAGCAACACCGGACATAACTGGCGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.05

Weight (kDa)

7.6

Isoelectric Point (pI)

69.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	637
AciI	CCGC	2 cut(s)	27, 33
AclWI	GGATC	4 cut(s)	529, 573, 586, 650
AcoI	YGGCCR	1 cut(s)	53
AcsI	RAATTY	1 cut(s)	418
AcuI	CTGAAG	1 cut(s)	147
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	3 cut(s)	274, 518, 632
AjnI	CCWGG	1 cut(s)	132
AluBI	AGCT	6 cut(s)	153, 237, 271, 503, 552, 561
AluI	AGCT	6 cut(s)	153, 237, 271, 503, 552, 561
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	3 cut(s)	215, 358, 533
AlwI	GGATC	4 cut(s)	529, 573, 586, 650
Ama87I	CYCGRG	1 cut(s)	272
AoxI	GGCC	2 cut(s)	53, 497
ApeKI	GCWGC	5 cut(s)	150, 503, 549, 728, 731
ApoI	RAATTY	1 cut(s)	418
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	2 cut(s)	248, 265
AsuHPI	GGTGA	5 cut(s)	230, 585, 591, 636, 654
AvaI	CYCGRG	1 cut(s)	272
AvaII	GGWCC	2 cut(s)	248, 265
BamHI	GGATCC	1 cut(s)	578
BanII	GRGCYC	1 cut(s)	239
BbsI	GAAGAC	2 cut(s)	153, 605
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	5 cut(s)	162, 490, 561, 715, 743
BccI	CCATC	4 cut(s)	95, 185, 604, 667
BceAI	ACGGC	2 cut(s)	40, 68
BcgI	CGANNNNNNTGC	4 cut(s)	92, 126, 336, 370
BciT130I	CCWGG	1 cut(s)	134
BcoDI	GTCTC	3 cut(s)	215, 358, 533
BfaI	CTAG	3 cut(s)	344, 513, 558
BfmI	CTRYAG	4 cut(s)	14, 562, 716, 729
BisI	GCNGC	6 cut(s)	34, 151, 504, 550, 729, 732
BlsI	GCNGC	6 cut(s)	35, 152, 505, 551, 730, 733
Bme1390I	CCNGG	1 cut(s)	134
Bme18I	GGWCC	2 cut(s)	248, 265
BmeT110I	CYCGRG	1 cut(s)	272
BmgT120I	GGNCC	2 cut(s)	248, 265
BmiI	GGNNCC	1 cut(s)	580
BmrFI	CCNGG	1 cut(s)	134
BmsI	GCATC	1 cut(s)	90
BpiI	GAAGAC	2 cut(s)	153, 605
BplI	GAGNNNNNCTC	2 cut(s)	538, 570
BpuEI	CTTGAG	1 cut(s)	99
BsaBI	GATNNNNATC	1 cut(s)	654
BsaHI	GRCGYC	1 cut(s)	74
BsaJI	CCNNGG	4 cut(s)	56, 67, 261, 689
BsaWI	WCCGGW	2 cut(s)	215, 739
Bsc4I	CCNNNNNNNGG	3 cut(s)	274, 518, 632
Bse118I	RCCGGY	1 cut(s)	286
Bse1I	ACTGG	1 cut(s)	754
Bse3DI	GCAATG	2 cut(s)	463, 723
Bse8I	GATNNNNATC	1 cut(s)	654
BseBI	CCWGG	1 cut(s)	134
BseDI	CCNNGG	4 cut(s)	56, 67, 261, 689
BseGI	GGATG	2 cut(s)	63, 81
BseJI	GATNNNNATC	1 cut(s)	654
BseLI	CCNNNNNNNGG	3 cut(s)	274, 518, 632
BseMI	GCAATG	2 cut(s)	463, 723
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	754
BseRI	GAGGAG	1 cut(s)	290
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	5 cut(s)	162, 490, 561, 715, 743
BsgI	GTGCAG	1 cut(s)	251
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	2 cut(s)	55, 499
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	239
BsiHKCI	CYCGRG	1 cut(s)	272
BsiSI	CCGG	3 cut(s)	216, 287, 740
BslFI	GGGAC	1 cut(s)	85
BslI	CCNNNNNNNGG	3 cut(s)	274, 518, 632
BsmAI	GTCTC	3 cut(s)	215, 358, 533
BsmFI	GGGAC	1 cut(s)	85
BsnI	GGCC	2 cut(s)	55, 499
BsoBI	CYCGRG	1 cut(s)	272
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
Bsp19I	CCATGG	2 cut(s)	67, 261
BspACI	CCGC	2 cut(s)	27, 33
BspANI	GGCC	2 cut(s)	55, 499
BspCNI	CTCAG	1 cut(s)	217
BspLI	GGNNCC	1 cut(s)	580
BspMAI	CTGCAG	2 cut(s)	720, 733
BspPI	GGATC	4 cut(s)	529, 573, 586, 650
BsrDI	GCAATG	2 cut(s)	463, 723
BsrFI	RCCGGY	1 cut(s)	286
BsrI	ACTGG	1 cut(s)	754
BssAI	RCCGGY	1 cut(s)	286
BssECI	CCNNGG	4 cut(s)	56, 67, 261, 689
BssMI	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	3 cut(s)	67, 261, 689
Bst2UI	CCWGG	1 cut(s)	134
Bst4CI	ACNGT	2 cut(s)	252, 635
Bst6I	CTCTTC	1 cut(s)	675
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	501
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	2 cut(s)	67, 261
BstENI	CCTNNNNNAGG	1 cut(s)	516
BstF5I	GGATG	2 cut(s)	63, 81
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	6 cut(s)	121, 524, 581, 658, 698, 715
BstMAI	GTCTC	3 cut(s)	215, 358, 533
BstMBI	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 558
BstNI	CCWGG	1 cut(s)	134
BstSCI	CCNGG	1 cut(s)	132
BstSFI	CTRYAG	4 cut(s)	14, 562, 716, 729
BstV1I	GCAGC	5 cut(s)	162, 490, 561, 715, 743
BstV2I	GAAGAC	2 cut(s)	153, 605
BstX2I	RGATCY	1 cut(s)	578
BstYI	RGATCY	1 cut(s)	578
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	2 cut(s)	55, 499
BtgI	CCRYGG	2 cut(s)	67, 261
BtsCI	GGATG	2 cut(s)	63, 81
BtsI	GCAGTG	1 cut(s)	725
BtsIMutI	CAGTG	1 cut(s)	725
Cac8I	GCNNGC	1 cut(s)	501
CfoI	GCGC	1 cut(s)	414
Cfr10I	RCCGGY	1 cut(s)	286
Cfr13I	GGNCC	2 cut(s)	248, 265
CseI	GACGC	1 cut(s)	82
CviAII	CATG	2 cut(s)	68, 262
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	6 cut(s)	120, 523, 580, 657, 697, 714
DpnII	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
DraI	TTTAAA	1 cut(s)	244
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	675
EarI	CTCTTC	1 cut(s)	675
Ecl136II	GAGCTC	1 cut(s)	237
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	3 cut(s)	67, 261, 689
Eco24I	GRGCYC	1 cut(s)	239
Eco32I	GATATC	1 cut(s)	489
Eco47I	GGWCC	2 cut(s)	248, 265
Eco52I	CGGCCG	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	147
Eco88I	CYCGRG	1 cut(s)	272
EcoICRI	GAGCTC	1 cut(s)	237
EcoNI	CCTNNNNNAGG	1 cut(s)	516
EcoRII	CCWGG	1 cut(s)	132
EcoRV	GATATC	1 cut(s)	489
EcoT14I	CCWWGG	3 cut(s)	67, 261, 689
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	3 cut(s)	67, 261, 689
FaeI	CATG	2 cut(s)	71, 265
FaiI	YATR	9 cut(s)	44, 69, 263, 302, 315, 402, 467, 564, 746
FaqI	GGGAC	1 cut(s)	85
FatI	CATG	2 cut(s)	67, 261
FblI	GTMKAC	1 cut(s)	637
Fnu4HI	GCNGC	6 cut(s)	34, 151, 504, 550, 729, 732
FokI	GGATG	2 cut(s)	50, 68
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	6 cut(s)	34, 151, 504, 550, 729, 732
FspBI	CTAG	3 cut(s)	344, 513, 558
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	6 cut(s)	34, 151, 504, 550, 729, 732
HaeIII	GGCC	2 cut(s)	55, 499
HapII	CCGG	3 cut(s)	216, 287, 740
HgaI	GACGC	1 cut(s)	82
HhaI	GCGC	1 cut(s)	414
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	2 cut(s)	71, 265
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	4 cut(s)	140, 182, 212, 461
HpaII	CCGG	3 cut(s)	216, 287, 740
HphI	GGTGA	5 cut(s)	230, 585, 591, 636, 654
Hpy166II	GTNNAC	1 cut(s)	638
Hpy188I	TCNGA	4 cut(s)	103, 190, 202, 712
Hpy188III	TCNNGA	4 cut(s)	116, 128, 292, 443
Hpy8I	GTNNAC	1 cut(s)	638
Hpy99I	CGWCG	4 cut(s)	126, 160, 202, 681
HpyAV	CCTTC	3 cut(s)	98, 343, 612
HpyCH4III	ACNGT	2 cut(s)	252, 635
HpyCH4V	TGCA	7 cut(s)	81, 232, 383, 456, 718, 723, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 558
HpyF3I	CTNAG	1 cut(s)	225
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	2 cut(s)	71, 265
HspAI	GCGC	1 cut(s)	412
Kzo9I	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
LmnI	GCTCC	1 cut(s)	546
Lsp1109I	GCAGC	5 cut(s)	162, 490, 561, 715, 743
LweI	GCATC	1 cut(s)	90
MaeI	CTAG	3 cut(s)	344, 513, 558
MalI	GATC	6 cut(s)	120, 523, 580, 657, 697, 714
MboI	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
MboII	GAAGA	5 cut(s)	153, 357, 597, 605, 662
MflI	RGATCY	1 cut(s)	578
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	2 cut(s)	418, 433
MlyI	GAGTC	3 cut(s)	134, 176, 455
MmeI	TCCRAC	4 cut(s)	148, 180, 234, 606
MseI	TTAA	1 cut(s)	243
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	3 cut(s)	216, 287, 740
MspR9I	CCNGG	1 cut(s)	134
MvaI	CCWGG	1 cut(s)	134
MwoI	GCNNNNNNNGC	2 cut(s)	33, 558
NcoI	CCATGG	2 cut(s)	67, 261
NdeII	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
NlaIII	CATG	2 cut(s)	71, 265
NlaIV	GGNNCC	1 cut(s)	580
NmeAIII	GCCGAG	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	272
PfeI	GAWTC	1 cut(s)	212
PkrI	GCNGC	6 cut(s)	35, 152, 505, 551, 730, 733
PleI	GAGTC	3 cut(s)	134, 176, 455
PpsI	GAGTC	3 cut(s)	134, 176, 455
Psp124BI	GAGCTC	1 cut(s)	239
Psp6I	CCWGG	1 cut(s)	132
PspGI	CCWGG	1 cut(s)	132
PspN4I	GGNNCC	1 cut(s)	580
PspPI	GGNCC	2 cut(s)	248, 265
PspXI	VCTCGAGB	1 cut(s)	272
PstI	CTGCAG	2 cut(s)	720, 733
PsuI	RGATCY	1 cut(s)	578
PvuII	CAGCTG	1 cut(s)	503
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	243
SatI	GCNGC	6 cut(s)	34, 151, 504, 550, 729, 732
Sau3AI	GATC	6 cut(s)	118, 521, 578, 655, 695, 712
Sau96I	GGNCC	2 cut(s)	248, 265
SchI	GAGTC	3 cut(s)	134, 176, 455
ScrFI	CCNGG	1 cut(s)	134
SduI	GDGCHC	1 cut(s)	239
SfaNI	GCATC	1 cut(s)	90
SfcI	CTRYAG	4 cut(s)	14, 562, 716, 729
Sfr274I	CTCGAG	1 cut(s)	272
SinI	GGWCC	2 cut(s)	248, 265
SlaI	CTCGAG	1 cut(s)	272
SmlI	CTYRAG	2 cut(s)	114, 272
SmoI	CTYRAG	2 cut(s)	114, 272
Sse9I	AATT	2 cut(s)	418, 433
SsiI	CCGC	2 cut(s)	27, 33
SspMI	CTAG	3 cut(s)	344, 513, 558
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	1 cut(s)	132
StyI	CCWWGG	3 cut(s)	67, 261, 689
TaaI	ACNGT	2 cut(s)	252, 635
TaqI	TCGA	2 cut(s)	273, 517
TasI	AATT	2 cut(s)	418, 433
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	1 cut(s)	212
Tru1I	TTAA	1 cut(s)	243
Tru9I	TTAA	1 cut(s)	243
TscAI	CASTG	1 cut(s)	725
TseI	GCWGC	5 cut(s)	150, 503, 549, 728, 731
TspDTI	ATGAA	3 cut(s)	52, 59, 188
TspGWI	ACGGA	1 cut(s)	694
TspRI	CASTG	1 cut(s)	725
VpaK11BI	GGWCC	2 cut(s)	248, 265
XagI	CCTNNNNNAGG	1 cut(s)	516
XapI	RAATTY	1 cut(s)	418
XhoI	CTCGAG	1 cut(s)	272
XmiI	GTMKAC	1 cut(s)	637
XspI	CTAG	3 cut(s)	344, 513, 558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.