Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr3A

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Forward (+)

12841061 .. 12844308

Gene Structure 3248 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh3AG144800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 312 bp

ATGGGATGCCTTGTATTTCGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGAGGTCCTCGTCGGTTGGTAATAACAGTGACGAGTCTAATGGGTAATCTTGAGATAGGGAGTATGACCAAGTTGAGGAAGCTAAACCGAACTATGGCTCATCGCCTGTCCATGCTGACGACACAGGTGTCGCAGTTGGTGAAGATCGAACGCATTGAAACCACGGTTGCCAAGATCGACCAGTTTGCACCTTCTAAACAAGATAAGAGAAAGCGCTCCGAGATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003735 GO:0005198 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005840 GO:0015934 GO:0022625 GO:0022626 GO:0032991 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0044391 GO:0044422 GO:0044424 GO:0044444 GO:0044445 GO:0044446 GO:0044464 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03010 map03010

Pfam Domains

Protein Families

Ribosomal_L17

Protein Analysis

103

Amino Acids

11.87

Weight (kDa)

11.81

Isoelectric Point (pI)

51.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	211
AclWI	GGATC	1 cut(s)	56
AfeI	AGCGCT	1 cut(s)	299
AfiI	CCNNNNNNNGG	2 cut(s)	159, 178
AgsI	TTSAA	1 cut(s)	242
AluBI	AGCT	2 cut(s)	83, 166
AluI	AGCT	2 cut(s)	83, 166
AlwI	GGATC	1 cut(s)	56
Ama87I	CYCGRG	1 cut(s)	84
Aor51HI	AGCGCT	1 cut(s)	299
AspLEI	GCGC	1 cut(s)	300
AspS9I	GGNCC	1 cut(s)	89
AsuHPI	GGTGA	1 cut(s)	235
AvaI	CYCGRG	1 cut(s)	84
AvaII	GGWCC	1 cut(s)	89
BcgI	CGANNNNNNTGC	2 cut(s)	251, 285
BclI	TGATCA	1 cut(s)	42
BfaI	CTAG	1 cut(s)	77
BfoI	RGCGCY	1 cut(s)	301
Bme18I	GGWCC	1 cut(s)	89
BmeT110I	CYCGRG	1 cut(s)	84
BmgT120I	GGNCC	1 cut(s)	89
BplI	GAGNNNNNCTC	2 cut(s)	58, 90
BpuEI	CTTGAG	1 cut(s)	155
BsaBI	GATNNNNATC	1 cut(s)	47
BsaJI	CCNNGG	1 cut(s)	246
Bsc4I	CCNNNNNNNGG	2 cut(s)	159, 178
Bse1I	ACTGG	1 cut(s)	265
Bse8I	GATNNNNATC	1 cut(s)	47
BseDI	CCNNGG	1 cut(s)	246
BseGI	GGATG	1 cut(s)	11
BseJI	GATNNNNATC	1 cut(s)	47
BseLI	CCNNNNNNNGG	2 cut(s)	159, 178
BseNI	ACTGG	1 cut(s)	265
BseRI	GAGGAG	1 cut(s)	82
BsiHKCI	CYCGRG	1 cut(s)	84
BslI	CCNNNNNNNGG	2 cut(s)	159, 178
BsoBI	CYCGRG	1 cut(s)	84
Bsp143I	GATC	5 cut(s)	20, 42, 48, 228, 258
BspPI	GGATC	1 cut(s)	56
BsrI	ACTGG	1 cut(s)	265
BssECI	CCNNGG	1 cut(s)	246
BssMI	GATC	5 cut(s)	20, 42, 48, 228, 258
Bst4CI	ACNGT	2 cut(s)	112, 250
BstDSI	CCRYGG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	11
BstH2I	RGCGCY	1 cut(s)	301
BstHHI	GCGC	1 cut(s)	300
BstKTI	GATC	5 cut(s)	23, 45, 51, 231, 261
BstMBI	GATC	5 cut(s)	20, 42, 48, 228, 258
BtgI	CCRYGG	1 cut(s)	246
BtgZI	GCGATG	1 cut(s)	170
BtsCI	GGATG	1 cut(s)	11
BtsIMutI	CAGTG	1 cut(s)	117
CfoI	GCGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	89
CviAII	CATG	1 cut(s)	196
CviJI	RGCY	3 cut(s)	83, 166, 182
CviKI_1	RGCY	3 cut(s)	83, 166, 182
DpnI	GATC	5 cut(s)	22, 44, 50, 230, 260
DpnII	GATC	5 cut(s)	20, 42, 48, 228, 258
DrdI	GACNNNNNNGTC	1 cut(s)	211
DseDI	GACNNNNNNGTC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	89
Eco47III	AGCGCT	1 cut(s)	299
Eco88I	CYCGRG	1 cut(s)	84
EcoO109I	RGGNCCY	1 cut(s)	89
FaeI	CATG	1 cut(s)	199
FaiI	YATR	3 cut(s)	149, 179, 197
FatI	CATG	1 cut(s)	195
FbaI	TGATCA	1 cut(s)	42
FokI	GGATG	1 cut(s)	18
FspBI	CTAG	1 cut(s)	77
GlaI	GCGC	1 cut(s)	299
HaeII	RGCGCY	1 cut(s)	301
HhaI	GCGC	1 cut(s)	300
Hin1II	CATG	1 cut(s)	199
Hin6I	GCGC	1 cut(s)	298
HinP1I	GCGC	1 cut(s)	298
HinfI	GANTC	2 cut(s)	73, 118
HphI	GGTGA	1 cut(s)	235
Hpy188I	TCNGA	1 cut(s)	304
Hpy188III	TCNNGA	2 cut(s)	46, 134
Hpy99I	CGWCG	2 cut(s)	56, 99
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	2 cut(s)	112, 250
HpyCH4V	TGCA	1 cut(s)	272
Hsp92II	CATG	1 cut(s)	199
HspAI	GCGC	1 cut(s)	298
Ksp22I	TGATCA	1 cut(s)	42
Kzo9I	GATC	5 cut(s)	20, 42, 48, 228, 258
LmnI	GCTCC	1 cut(s)	305
LpnPI	CCDG	4 cut(s)	31, 194, 203, 278
MaeI	CTAG	1 cut(s)	77
MaeIII	GTNAC	1 cut(s)	112
MalI	GATC	5 cut(s)	22, 44, 50, 230, 260
MboI	GATC	5 cut(s)	20, 42, 48, 228, 258
MboII	GAAGA	1 cut(s)	238
MlyI	GAGTC	2 cut(s)	67, 127
MmeI	TCCRAC	1 cut(s)	44
MnlI	CCTC	5 cut(s)	60, 63, 80, 102, 153
NdeII	GATC	5 cut(s)	20, 42, 48, 228, 258
NlaIII	CATG	1 cut(s)	199
NmuCI	GTSAC	1 cut(s)	112
PaeR7I	CTCGAG	1 cut(s)	84
PcsI	WCGNNNNNNNCGW	1 cut(s)	91
PleI	GAGTC	2 cut(s)	67, 126
PpsI	GAGTC	2 cut(s)	67, 126
PpuMI	RGGWCCY	1 cut(s)	89
Psp5II	RGGWCCY	1 cut(s)	89
PspPI	GGNCC	1 cut(s)	89
PspPPI	RGGWCCY	1 cut(s)	89
PspXI	VCTCGAGB	1 cut(s)	84
Sau3AI	GATC	5 cut(s)	20, 42, 48, 228, 258
Sau96I	GGNCC	1 cut(s)	89
SchI	GAGTC	2 cut(s)	67, 127
SetI	ASST	5 cut(s)	85, 91, 168, 213, 277
Sfr274I	CTCGAG	1 cut(s)	84
SinI	GGWCC	1 cut(s)	89
SlaI	CTCGAG	1 cut(s)	84
SmlI	CTYRAG	2 cut(s)	84, 134
SmoI	CTYRAG	2 cut(s)	84, 134
SspMI	CTAG	1 cut(s)	77
TaaI	ACNGT	2 cut(s)	112, 250
TaqI	TCGA	4 cut(s)	19, 85, 231, 261
TscAI	CASTG	1 cut(s)	117
TseFI	GTSAC	1 cut(s)	112
Tsp45I	GTSAC	1 cut(s)	112
TspRI	CASTG	1 cut(s)	117
VpaK11BI	GGWCC	1 cut(s)	89
XhoI	CTCGAG	1 cut(s)	84
XspI	CTAG	1 cut(s)	77

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.