FvH4_1g08640

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0000728
Physical Location & Seq
Reverse (-)
4586159 .. 4588862
2704 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g08640.t1

Sequence Viewer

Length: 765 bp
ATGTCTATTGCTTTGGACAGAAATGGGAATAGAGGGAATGGTATGATCCAACGCTCCGGGAGGTTCATCCATGGGATGCCTTGTATTTCGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGCAGCTCAAGGTCTTCGTCGGTTGGTAATAACAGTGACGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGCTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCATGGACCAGCTGGAGGAGGTTTTGCCTGTCAAGAGAGGGATATCCAAGTTCTATAATGGCAAATCAAAGTCCTTCACGAGCCTAGCAGATGCATCATCTGTTTCTACTGTTAAGGAGCTTGCAAAGCCAGTAAATCCTTATAACAAGAAGCGTAAGAATCTGTTGGCCAATGGTTATTTCCGGGACCTGAAGAATAATGGTGGTGGGATAAGGAGATCAGCTAGCTCTAGTCGAGGCATATATCTTGAAGAGACTCTTAGTGGCACCAACAGTGGGGATGATTCCAAATCAACTTCTCAGTCGCCCTTTTCTTGTCGTCCTCCTCTACATCCACAGCATAAAAGATCGCCTGGTAATGGATCATCAGATTCTTCACCGCCGTCTCCTCCTCAACGCAATGCTCCTTGGCGATCGTTCTCACTCTCTGATCTACAATGTGCCACCGCGCCAACGCCTACCGTTACCGGCTTTGAAATTTGTAGCGGGGACATGGACAACCAACCACATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

255

Amino Acids

27.49

Weight (kDa)

7.67

Isoelectric Point (pI)

67.31

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 396
AccB1I GGYRCC 1 cut(s) 518
AccII CGCG 1 cut(s) 701
AciI CCGC 3 cut(s) 632, 699, 738
AclWI GGATC 3 cut(s) 40, 126, 622
AcoI YGGCCR 1 cut(s) 420
AcsI RAATTY 1 cut(s) 729
AcuI CTGAAG 1 cut(s) 464
AfiI CCNNNNNNNGG 3 cut(s) 268, 528, 611
AgsI TTSAA 2 cut(s) 503, 728
AjnI CCWGG 1 cut(s) 604
AjuI GAANNNNNNNTTGG 2 cut(s) 416, 448
AluBI AGCT 6 cut(s) 153, 231, 265, 373, 476, 480
AluI AGCT 6 cut(s) 153, 231, 265, 373, 476, 480
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 2 cut(s) 500, 642
AlwI GGATC 3 cut(s) 40, 126, 622
AoxI GGCC 2 cut(s) 242, 420
ApeKI GCWGC 1 cut(s) 150
ApoI RAATTY 1 cut(s) 729
AspLEI GCGC 1 cut(s) 703
AspS9I GGNCC 3 cut(s) 242, 259, 439
AsuC2I CCSGG 2 cut(s) 58, 437
AsuHPI GGTGA 2 cut(s) 221, 621
AsuNHI GCTAGC 1 cut(s) 476
AvaII GGWCC 2 cut(s) 259, 439
BalI TGGCCA 1 cut(s) 422
BanI GGYRCC 1 cut(s) 518
BanII GRGCYC 1 cut(s) 233
BauI CACGAG 1 cut(s) 331
BbsI GAAGAC 1 cut(s) 153
Bbv12I GWGCWC 1 cut(s) 233
BbvCI CCTCAGC 1 cut(s) 219
BbvI GCAGC 1 cut(s) 162
BceAI ACGGC 1 cut(s) 619
BciT130I CCWGG 1 cut(s) 606
BclI TGATCA 1 cut(s) 112
BcnI CCSGG 2 cut(s) 58, 437
BcoDI GTCTC 2 cut(s) 500, 642
BfaI CTAG 4 cut(s) 147, 338, 477, 483
BisI GCNGC 1 cut(s) 151
BlsI GCNGC 1 cut(s) 152
Bme1390I CCNGG 3 cut(s) 58, 437, 606
Bme18I GGWCC 2 cut(s) 259, 439
BmgT120I GGNCC 3 cut(s) 242, 259, 439
BmiI GGNNCC 2 cut(s) 440, 520
BmrFI CCNGG 3 cut(s) 58, 437, 606
BmsI GCATC 3 cut(s) 66, 334, 356
BmtI GCTAGC 1 cut(s) 480
BpiI GAAGAC 1 cut(s) 153
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpmI CTGGAG 1 cut(s) 287
Bpu10I CCTNAGC 1 cut(s) 219
BpuEI CTTGAG 1 cut(s) 139
BpuMI CCSGG 2 cut(s) 58, 437
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 3 cut(s) 70, 255, 659
Bsc4I CCNNNNNNNGG 3 cut(s) 268, 528, 611
Bse118I RCCGGY 1 cut(s) 719
Bse1I ACTGG 1 cut(s) 383
Bse3DI GCAATG 1 cut(s) 658
Bse8I GATNNNNATC 1 cut(s) 117
BseBI CCWGG 1 cut(s) 606
BseDI CCNNGG 3 cut(s) 70, 255, 659
BseGI GGATG 4 cut(s) 66, 81, 538, 583
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 3 cut(s) 268, 528, 611
BseMI GCAATG 1 cut(s) 658
BseMII CTCAG 2 cut(s) 210, 566
BseNI ACTGG 1 cut(s) 383
BseRI GAGGAG 6 cut(s) 152, 227, 284, 567, 630, 633
BseXI GCAGC 1 cut(s) 162
Bsh1236I CGCG 1 cut(s) 701
Bsh1285I CGRYCG 1 cut(s) 668
BshFI GGCC 2 cut(s) 244, 422
BshNI GGYRCC 1 cut(s) 518
BsiEI CGRYCG 1 cut(s) 668
BsiHKAI GWGCWC 1 cut(s) 233
BsiSI CCGG 3 cut(s) 57, 436, 720
BslFI GGGAC 2 cut(s) 452, 755
BslI CCNNNNNNNGG 3 cut(s) 268, 528, 611
BsmAI GTCTC 2 cut(s) 500, 642
BsmBI CGTCTC 1 cut(s) 642
BsmFI GGGAC 2 cut(s) 452, 755
BsnI GGCC 2 cut(s) 244, 422
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
Bsp19I CCATGG 2 cut(s) 70, 255
BspACI CCGC 3 cut(s) 632, 699, 738
BspANI GGCC 2 cut(s) 244, 422
BspCNI CTCAG 2 cut(s) 211, 565
BspFNI CGCG 1 cut(s) 701
BspLI GGNNCC 2 cut(s) 440, 520
BspOI GCTAGC 1 cut(s) 480
BspPI GGATC 3 cut(s) 40, 126, 622
BspT107I GGYRCC 1 cut(s) 518
BsrDI GCAATG 1 cut(s) 658
BsrFI RCCGGY 1 cut(s) 719
BsrI ACTGG 1 cut(s) 383
BssAI RCCGGY 1 cut(s) 719
BssECI CCNNGG 3 cut(s) 70, 255, 659
BssMI GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
BssSI CACGAG 1 cut(s) 331
BssT1I CCWWGG 3 cut(s) 70, 255, 659
Bst2BI CACGAG 1 cut(s) 331
Bst2UI CCWGG 1 cut(s) 606
Bst4CI ACNGT 4 cut(s) 182, 364, 527, 715
Bst6I CTCTTC 1 cut(s) 498
BstC8I GCNNGC 2 cut(s) 375, 478
BstDEI CTNAG 3 cut(s) 219, 512, 552
BstDSI CCRYGG 2 cut(s) 70, 255
BstF5I GGATG 4 cut(s) 66, 81, 538, 583
BstFNI CGCG 1 cut(s) 701
BstHHI GCGC 1 cut(s) 703
BstKTI GATC 9 cut(s) 48, 93, 115, 121, 473, 602, 617, 668, 685
BstMAI GTCTC 2 cut(s) 500, 642
BstMBI GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
BstMCI CGRYCG 1 cut(s) 668
BstMWI GCNNNNNNNGC 1 cut(s) 379
BstNI CCWGG 1 cut(s) 606
BstSCI CCNGG 3 cut(s) 56, 435, 604
BstUI CGCG 1 cut(s) 701
BstV1I GCAGC 1 cut(s) 162
BstV2I GAAGAC 1 cut(s) 153
BsuRI GGCC 2 cut(s) 244, 422
BtgI CCRYGG 2 cut(s) 70, 255
BtsCI GGATG 4 cut(s) 66, 81, 538, 583
BtsIMutI CAGTG 2 cut(s) 187, 532
Cac8I GCNNGC 2 cut(s) 375, 478
CfoI GCGC 1 cut(s) 703
Cfr10I RCCGGY 1 cut(s) 719
Cfr13I GGNCC 3 cut(s) 242, 259, 439
CviAII CATG 3 cut(s) 71, 256, 745
DdeI CTNAG 3 cut(s) 219, 512, 552
DpnI GATC 9 cut(s) 47, 92, 114, 120, 472, 601, 616, 667, 684
DpnII GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
DraI TTTAAA 1 cut(s) 238
EaeI YGGCCR 1 cut(s) 420
Eam1104I CTCTTC 1 cut(s) 498
EarI CTCTTC 1 cut(s) 498
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 3 cut(s) 70, 255, 659
Eco24I GRGCYC 1 cut(s) 233
Eco32I GATATC 1 cut(s) 297
Eco47I GGWCC 2 cut(s) 259, 439
Eco53kI GAGCTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 464
EcoICRI GAGCTC 1 cut(s) 231
EcoO109I RGGNCCY 2 cut(s) 242, 439
EcoRII CCWGG 1 cut(s) 604
EcoRV GATATC 1 cut(s) 297
EcoT14I CCWWGG 3 cut(s) 70, 255, 659
EcoT22I ATGCAT 1 cut(s) 349
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 3 cut(s) 70, 255, 659
Esp3I CGTCTC 1 cut(s) 642
FaeI CATG 3 cut(s) 74, 259, 748
FaiI YATR 9 cut(s) 44, 72, 257, 309, 396, 494, 496, 594, 746
FalI AAGNNNNNCTT 2 cut(s) 495, 527
FaqI GGGAC 2 cut(s) 452, 755
FatI CATG 3 cut(s) 70, 255, 744
FauI CCCGC 1 cut(s) 731
FbaI TGATCA 1 cut(s) 112
Fnu4HI GCNGC 1 cut(s) 151
FokI GGATG 4 cut(s) 53, 88, 545, 570
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 151
FspBI CTAG 4 cut(s) 147, 338, 477, 483
GlaI GCGC 1 cut(s) 702
GluI GCNGC 1 cut(s) 151
GsuI CTGGAG 1 cut(s) 287
HaeIII GGCC 2 cut(s) 244, 422
HapII CCGG 3 cut(s) 57, 436, 720
HhaI GCGC 1 cut(s) 703
Hin1II CATG 3 cut(s) 74, 259, 748
Hin6I GCGC 1 cut(s) 701
HinP1I GCGC 1 cut(s) 701
HinfI GANTC 6 cut(s) 143, 188, 412, 508, 536, 623
HpaII CCGG 3 cut(s) 57, 436, 720
HphI GGTGA 2 cut(s) 221, 621
Hpy188I TCNGA 4 cut(s) 205, 228, 622, 682
Hpy188III TCNNGA 4 cut(s) 116, 286, 331, 500
Hpy99I CGWCG 3 cut(s) 126, 169, 205
HpyAV CCTTC 1 cut(s) 337
HpyCH4III ACNGT 4 cut(s) 182, 364, 527, 715
HpyCH4V TGCA 2 cut(s) 347, 377
HpyF10VI GCNNNNNNNGC 1 cut(s) 379
HpyF3I CTNAG 3 cut(s) 219, 512, 552
Hsp92II CATG 3 cut(s) 74, 259, 748
HspAI GCGC 1 cut(s) 701
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
LmnI GCTCC 3 cut(s) 59, 370, 661
Lsp1109I GCAGC 1 cut(s) 162
LweI GCATC 3 cut(s) 66, 334, 356
MaeI CTAG 4 cut(s) 147, 338, 477, 483
MaeIII GTNAC 2 cut(s) 182, 715
MalI GATC 9 cut(s) 47, 92, 114, 120, 472, 601, 616, 667, 684
MboI GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
MboII GAAGA 4 cut(s) 153, 457, 515, 618
MhlI GDGCHC 1 cut(s) 233
MlsI TGGCCA 1 cut(s) 422
MluCI AATT 1 cut(s) 729
MluNI TGGCCA 1 cut(s) 422
MlyI GAGTC 3 cut(s) 137, 197, 502
MmeI TCCRAC 3 cut(s) 73, 114, 183
Mox20I TGGCCA 1 cut(s) 422
Mph1103I ATGCAT 1 cut(s) 349
MscI TGGCCA 1 cut(s) 422
MseI TTAA 2 cut(s) 237, 366
Msp20I TGGCCA 1 cut(s) 422
MspA1I CMGCKG 1 cut(s) 265
MspI CCGG 3 cut(s) 57, 436, 720
MspR9I CCNGG 3 cut(s) 58, 437, 606
MvaI CCWGG 1 cut(s) 606
MvnI CGCG 1 cut(s) 701
MwoI GCNNNNNNNGC 1 cut(s) 379
NciI CCSGG 2 cut(s) 58, 437
NcoI CCATGG 2 cut(s) 70, 255
NdeII GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
NheI GCTAGC 1 cut(s) 476
NlaIII CATG 3 cut(s) 74, 259, 748
NlaIV GGNNCC 2 cut(s) 440, 520
NmuCI GTSAC 1 cut(s) 182
NsiI ATGCAT 1 cut(s) 349
PfeI GAWTC 3 cut(s) 412, 536, 623
PfoI TCCNGGA 2 cut(s) 56, 435
PkrI GCNGC 1 cut(s) 152
Ple19I CGATCG 1 cut(s) 668
PleI GAGTC 3 cut(s) 137, 196, 502
PpsI GAGTC 3 cut(s) 137, 196, 502
PpuMI RGGWCCY 1 cut(s) 439
PsiI TTATAA 1 cut(s) 396
Psp124BI GAGCTC 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 439
Psp6I CCWGG 1 cut(s) 604
PspGI CCWGG 1 cut(s) 604
PspN4I GGNNCC 2 cut(s) 440, 520
PspPI GGNCC 3 cut(s) 242, 259, 439
PspPPI RGGWCCY 1 cut(s) 439
PvuI CGATCG 1 cut(s) 668
PvuII CAGCTG 1 cut(s) 265
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 237, 366
SatI GCNGC 1 cut(s) 151
Sau3AI GATC 9 cut(s) 45, 90, 112, 118, 470, 599, 614, 665, 682
Sau96I GGNCC 3 cut(s) 242, 259, 439
SchI GAGTC 3 cut(s) 137, 197, 502
ScrFI CCNGG 3 cut(s) 58, 437, 606
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 3 cut(s) 66, 334, 356
SinI GGWCC 2 cut(s) 259, 439
SmlI CTYRAG 1 cut(s) 154
SmoI CTYRAG 1 cut(s) 154
Sse9I AATT 1 cut(s) 729
SsiI CCGC 3 cut(s) 632, 699, 738
SspMI CTAG 4 cut(s) 147, 338, 477, 483
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 3 cut(s) 56, 435, 604
StyI CCWWGG 3 cut(s) 70, 255, 659
TaaI ACNGT 4 cut(s) 182, 364, 527, 715
TaqI TCGA 2 cut(s) 89, 487
TasI AATT 1 cut(s) 729
TfiI GAWTC 3 cut(s) 412, 536, 623
Tru1I TTAA 2 cut(s) 237, 366
Tru9I TTAA 2 cut(s) 237, 366
TscAI CASTG 2 cut(s) 187, 532
TseFI GTSAC 1 cut(s) 182
TseI GCWGC 1 cut(s) 150
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 2 cut(s) 187, 532
VpaK11BI GGWCC 2 cut(s) 259, 439
XapI RAATTY 1 cut(s) 729
XcmI CCANNNNNNNNNTGG 1 cut(s) 262
XspI CTAG 4 cut(s) 147, 338, 477, 483
Zsp2I ATGCAT 1 cut(s) 349
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.