Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp07

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Forward (+)

18673297 .. 18676269

Gene Structure 2973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.7G199000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 732 bp

ATGCCTATTGCTTTAGACAGAAATGGTGGTGGCGGCAATATGATCCAAAGGCCGAGGTTCATCCACGGGATGCCTTGTCTCTCGATGCACGACTCGTCGGAGAACAAGGGCTTTGCTCAACATCGTCGTTTGGAGCAGGACTTGGACTCTTGTAGTTCGTCTTCAGTTGGTCGGAATAGTGATTCGTCTGATGGGTCATCGGAGGGCGACGACTCTGGTGAGGCTGAGATTCAGAGCTCGTATAAAGGACCTTTGGACACCATGGACCAGCTTGAGGAGGTTTTGCCTGTCAAGAGAGGCATATCTATGTTTTATAGTGGCAAATCAAAGTCCTTCACAAGCCTGGAAGATGTCTCGTCTGTTTCTTCTGTTAAGGACCTTGAAAAGCCAAAAAATCGTTTTATGAAGAAGCGCAAGAATTTATTAGCCCATAGTAATTATAGGAATTGCAATAACCCTTTGAAGAATAATGGTGCAGTAAAGAGACCAACTGCTAACTCTAGTCGAGGTTCATTTCTTCTTGGGGAGAACTTGAGCAGCTCAATTTCACCACCTCCTACTTCCTGTCTTCCACCTCTGCATCCACCTCTACATCCAGACAGTAAAAGATCTCCTGGTAATGGATCATCCCCACCTCCTCTTCGACGGAACTCTCCTTGGCGGTCGTTCTCTCTGTCTGATCTACAGTGTGTCGCTGCAGCAACGCCTAACATAACTGGCTTGGAAATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

244

Amino Acids

26.33

Weight (kDa)

8.99

Isoelectric Point (pI)

72.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	33, 661
AclWI	GGATC	2 cut(s)	37, 631
AcsI	RAATTY	2 cut(s)	418, 726
AcuI	CTGAAG	1 cut(s)	147
AfiI	CCNNNNNNNGG	2 cut(s)	274, 620
AgsI	TTSAA	2 cut(s)	383, 463
AjnI	CCWGG	2 cut(s)	342, 613
AluBI	AGCT	3 cut(s)	237, 271, 540
AluI	AGCT	3 cut(s)	237, 271, 540
Alw21I	GWGCWC	1 cut(s)	239
Alw26I	GTCTC	3 cut(s)	83, 358, 478
AlwI	GGATC	2 cut(s)	37, 631
AoxI	GGCC	1 cut(s)	50
ApeKI	GCWGC	3 cut(s)	537, 695, 698
ApoI	RAATTY	2 cut(s)	418, 726
AspLEI	GCGC	1 cut(s)	414
AspS9I	GGNCC	3 cut(s)	248, 265, 376
AsuHPI	GGTGA	2 cut(s)	230, 540
AvaII	GGWCC	3 cut(s)	248, 265, 376
BanII	GRGCYC	1 cut(s)	239
BarI	GAAGNNNNNNTAC	2 cut(s)	145, 177
BbsI	GAAGAC	2 cut(s)	153, 560
Bbv12I	GWGCWC	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	549, 682, 710
BccI	CCATC	1 cut(s)	185
BciT130I	CCWGG	2 cut(s)	344, 615
BcoDI	GTCTC	3 cut(s)	83, 358, 478
BfaI	CTAG	1 cut(s)	501
BfmI	CTRYAG	2 cut(s)	683, 696
BglII	AGATCT	1 cut(s)	608
BisI	GCNGC	4 cut(s)	34, 538, 696, 699
BlsI	GCNGC	4 cut(s)	35, 539, 697, 700
Bme1390I	CCNGG	2 cut(s)	344, 615
Bme18I	GGWCC	3 cut(s)	248, 265, 376
BmgT120I	GGNCC	3 cut(s)	248, 265, 376
BmrFI	CCNGG	2 cut(s)	344, 615
BmsI	GCATC	3 cut(s)	60, 75, 589
BpiI	GAAGAC	2 cut(s)	153, 560
BpuEI	CTTGAG	2 cut(s)	293, 553
BsaI	GGTCTC	1 cut(s)	478
BsaJI	CCNNGG	4 cut(s)	53, 64, 261, 656
Bsc4I	CCNNNNNNNGG	2 cut(s)	274, 620
Bse1I	ACTGG	1 cut(s)	721
BseBI	CCWGG	2 cut(s)	344, 615
BseDI	CCNNGG	4 cut(s)	53, 64, 261, 656
BseGI	GGATG	5 cut(s)	60, 75, 580, 592, 626
BseLI	CCNNNNNNNGG	2 cut(s)	274, 620
BseMII	CTCAG	1 cut(s)	216
BseNI	ACTGG	1 cut(s)	721
BseRI	GAGGAG	2 cut(s)	290, 627
BseXI	GCAGC	3 cut(s)	549, 682, 710
BsgI	GTGCAG	1 cut(s)	495
Bsh1285I	CGRYCG	1 cut(s)	665
BshFI	GGCC	1 cut(s)	52
BsiEI	CGRYCG	1 cut(s)	665
BsiHKAI	GWGCWC	1 cut(s)	239
BslI	CCNNNNNNNGG	2 cut(s)	274, 620
BsmAI	GTCTC	3 cut(s)	83, 358, 478
BsnI	GGCC	1 cut(s)	52
Bso31I	GGTCTC	1 cut(s)	478
Bsp1286I	GDGCHC	1 cut(s)	239
Bsp143I	GATC	4 cut(s)	42, 608, 623, 679
Bsp19I	CCATGG	1 cut(s)	261
BspACI	CCGC	2 cut(s)	33, 661
BspANI	GGCC	1 cut(s)	52
BspCNI	CTCAG	1 cut(s)	217
BspMAI	CTGCAG	1 cut(s)	700
BspPI	GGATC	2 cut(s)	37, 631
BspTNI	GGTCTC	1 cut(s)	478
BsrI	ACTGG	1 cut(s)	721
BssECI	CCNNGG	4 cut(s)	53, 64, 261, 656
BssMI	GATC	4 cut(s)	42, 608, 623, 679
BssT1I	CCWWGG	2 cut(s)	261, 656
Bst2UI	CCWGG	2 cut(s)	344, 615
Bst4CI	ACNGT	2 cut(s)	602, 687
Bst6I	CTCTTC	1 cut(s)	645
BstDEI	CTNAG	1 cut(s)	225
BstDSI	CCRYGG	2 cut(s)	64, 261
BstF5I	GGATG	5 cut(s)	60, 75, 580, 592, 626
BstHHI	GCGC	1 cut(s)	414
BstKTI	GATC	4 cut(s)	45, 611, 626, 682
BstMAI	GTCTC	3 cut(s)	83, 358, 478
BstMBI	GATC	4 cut(s)	42, 608, 623, 679
BstMCI	CGRYCG	1 cut(s)	665
BstNI	CCWGG	2 cut(s)	344, 615
BstSCI	CCNGG	2 cut(s)	342, 613
BstSFI	CTRYAG	2 cut(s)	683, 696
BstV1I	GCAGC	3 cut(s)	549, 682, 710
BstV2I	GAAGAC	2 cut(s)	153, 560
BstX2I	RGATCY	1 cut(s)	608
BstYI	RGATCY	1 cut(s)	608
BsuRI	GGCC	1 cut(s)	52
BtgI	CCRYGG	2 cut(s)	64, 261
BtsCI	GGATG	5 cut(s)	60, 75, 580, 592, 626
BtsIMutI	CAGTG	1 cut(s)	692
CfoI	GCGC	1 cut(s)	414
Cfr13I	GGNCC	3 cut(s)	248, 265, 376
CviAII	CATG	1 cut(s)	262
DdeI	CTNAG	1 cut(s)	225
DpnI	GATC	4 cut(s)	44, 610, 625, 681
DpnII	GATC	4 cut(s)	42, 608, 623, 679
Eam1104I	CTCTTC	1 cut(s)	645
EarI	CTCTTC	1 cut(s)	645
Ecl136II	GAGCTC	1 cut(s)	237
Eco130I	CCWWGG	2 cut(s)	261, 656
Eco24I	GRGCYC	1 cut(s)	239
Eco31I	GGTCTC	1 cut(s)	478
Eco47I	GGWCC	3 cut(s)	248, 265, 376
Eco53kI	GAGCTC	1 cut(s)	237
Eco57I	CTGAAG	1 cut(s)	147
EcoICRI	GAGCTC	1 cut(s)	237
EcoO109I	RGGNCCY	2 cut(s)	248, 376
EcoRII	CCWGG	2 cut(s)	342, 613
EcoT14I	CCWWGG	2 cut(s)	261, 656
EcoT38I	GRGCYC	1 cut(s)	239
ErhI	CCWWGG	2 cut(s)	261, 656
FaeI	CATG	1 cut(s)	265
FatI	CATG	1 cut(s)	261
Fnu4HI	GCNGC	4 cut(s)	34, 538, 696, 699
FokI	GGATG	5 cut(s)	47, 82, 567, 579, 613
FriOI	GRGCYC	1 cut(s)	239
Fsp4HI	GCNGC	4 cut(s)	34, 538, 696, 699
FspBI	CTAG	1 cut(s)	501
GlaI	GCGC	1 cut(s)	413
GluI	GCNGC	4 cut(s)	34, 538, 696, 699
HaeIII	GGCC	1 cut(s)	52
HhaI	GCGC	1 cut(s)	414
Hin1II	CATG	1 cut(s)	265
Hin6I	GCGC	1 cut(s)	412
HinP1I	GCGC	1 cut(s)	412
HinfI	GANTC	5 cut(s)	92, 146, 182, 212, 229
HphI	GGTGA	2 cut(s)	230, 540
Hpy188I	TCNGA	6 cut(s)	100, 174, 190, 202, 234, 679
Hpy188III	TCNNGA	3 cut(s)	82, 292, 596
Hpy99I	CGWCG	4 cut(s)	100, 129, 212, 648
HpyAV	CCTTC	1 cut(s)	343
HpyCH4III	ACNGT	2 cut(s)	602, 687
HpyCH4V	TGCA	5 cut(s)	88, 450, 476, 580, 698
HpyF3I	CTNAG	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	265
HspAI	GCGC	1 cut(s)	412
Kzo9I	GATC	4 cut(s)	42, 608, 623, 679
LmnI	GCTCC	1 cut(s)	133
Lsp1109I	GCAGC	3 cut(s)	549, 682, 710
LweI	GCATC	3 cut(s)	60, 75, 589
MaeI	CTAG	1 cut(s)	501
MalI	GATC	4 cut(s)	44, 610, 625, 681
MboI	GATC	4 cut(s)	42, 608, 623, 679
MboII	GAAGA	8 cut(s)	153, 357, 359, 418, 475, 509, 560, 632
MflI	RGATCY	1 cut(s)	608
MhlI	GDGCHC	1 cut(s)	239
MluCI	AATT	5 cut(s)	418, 436, 445, 543, 726
MlyI	GAGTC	3 cut(s)	86, 140, 206
MmeI	TCCRAC	2 cut(s)	78, 152
MseI	TTAA	1 cut(s)	372
MslI	CAYNNNNRTG	1 cut(s)	305
MspR9I	CCNGG	2 cut(s)	344, 615
MvaI	CCWGG	2 cut(s)	344, 615
NcoI	CCATGG	1 cut(s)	261
NdeII	GATC	4 cut(s)	42, 608, 623, 679
NlaIII	CATG	1 cut(s)	265
NmeAIII	GCCGAG	1 cut(s)	78
PfeI	GAWTC	2 cut(s)	182, 229
PkrI	GCNGC	4 cut(s)	35, 539, 697, 700
PleI	GAGTC	3 cut(s)	86, 140, 206
PpsI	GAGTC	3 cut(s)	86, 140, 206
PpuMI	RGGWCCY	2 cut(s)	248, 376
Psp124BI	GAGCTC	1 cut(s)	239
Psp5II	RGGWCCY	2 cut(s)	248, 376
Psp6I	CCWGG	2 cut(s)	342, 613
PspGI	CCWGG	2 cut(s)	342, 613
PspPI	GGNCC	3 cut(s)	248, 265, 376
PspPPI	RGGWCCY	2 cut(s)	248, 376
PstI	CTGCAG	1 cut(s)	700
PsuI	RGATCY	1 cut(s)	608
RseI	CAYNNNNRTG	1 cut(s)	305
SacI	GAGCTC	1 cut(s)	239
SaqAI	TTAA	1 cut(s)	372
SatI	GCNGC	4 cut(s)	34, 538, 696, 699
Sau3AI	GATC	4 cut(s)	42, 608, 623, 679
Sau96I	GGNCC	3 cut(s)	248, 265, 376
SchI	GAGTC	3 cut(s)	86, 140, 206
ScrFI	CCNGG	2 cut(s)	344, 615
SduI	GDGCHC	1 cut(s)	239
SfaNI	GCATC	3 cut(s)	60, 75, 589
SfcI	CTRYAG	2 cut(s)	683, 696
SinI	GGWCC	3 cut(s)	248, 265, 376
SmiMI	CAYNNNNRTG	1 cut(s)	305
SmlI	CTYRAG	2 cut(s)	272, 532
SmoI	CTYRAG	2 cut(s)	272, 532
Sse9I	AATT	5 cut(s)	418, 436, 445, 543, 726
SsiI	CCGC	2 cut(s)	33, 661
SspMI	CTAG	1 cut(s)	501
SstI	GAGCTC	1 cut(s)	239
StyD4I	CCNGG	2 cut(s)	342, 613
StyI	CCWWGG	2 cut(s)	261, 656
TaaI	ACNGT	2 cut(s)	602, 687
TaqI	TCGA	3 cut(s)	83, 505, 643
TasI	AATT	5 cut(s)	418, 436, 445, 543, 726
TauI	GCSGC	1 cut(s)	36
TfiI	GAWTC	2 cut(s)	182, 229
Tru1I	TTAA	1 cut(s)	372
Tru9I	TTAA	1 cut(s)	372
TscAI	CASTG	1 cut(s)	692
TseI	GCWGC	3 cut(s)	537, 695, 698
TspDTI	ATGAA	3 cut(s)	49, 419, 501
TspGWI	ACGGA	1 cut(s)	661
TspRI	CASTG	1 cut(s)	692
VpaK11BI	GGWCC	3 cut(s)	248, 265, 376
XapI	RAATTY	2 cut(s)	418, 726
XspI	CTAG	1 cut(s)	501

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.