Rh2DG096800

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0000728
Physical Location & Seq
Forward (+)
7633249 .. 7633533
285 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG096800.1

Sequence Viewer

Length: 285 bp
ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCAATGGTCCGGGACGTTCATCCATGGGATTATTTTGATCTACAATCCTAAAGGGTTTGGTCAGGATCGTCGTTTAGAGTTGGAGGAGGACTTTAGTCGCTCGAGGTCGTCGTCGGTTGGTAATAACAGTGACGTGTCTAATGGGTCGTTGAAGGGTGAGGAGACTGAGGTTCAGAGCTCGTTGAAAGAGCCTTTGGGCACCATGGACAAGCTTGAGGAGGTTTTTCCTGCCAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

94

Amino Acids

10.31

Weight (kDa)

4.89

Isoelectric Point (pI)

52.46

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 245
AclWI GGATC 2 cut(s) 40, 120
AflIII ACRYGT 1 cut(s) 180
AgsI TTSAA 2 cut(s) 199, 232
AjiI CACGTC 1 cut(s) 181
AjuI GAANNNNNNNTTGG 2 cut(s) 224, 256
AluBI AGCT 2 cut(s) 225, 259
AluI AGCT 2 cut(s) 225, 259
Alw21I GWGCWC 1 cut(s) 227
Alw26I GTCTC 1 cut(s) 203
AlwI GGATC 2 cut(s) 40, 120
Ama87I CYCGRG 1 cut(s) 148
AspS9I GGNCC 1 cut(s) 54
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 1 cut(s) 215
AvaI CYCGRG 1 cut(s) 148
AvaII GGWCC 1 cut(s) 54
BaeGI GKGCMC 1 cut(s) 248
BanI GGYRCC 1 cut(s) 245
BanII GRGCYC 1 cut(s) 227
Bbv12I GWGCWC 1 cut(s) 227
BcnI CCSGG 1 cut(s) 58
BcoDI GTCTC 1 cut(s) 203
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 1 cut(s) 54
BmeT110I CYCGRG 1 cut(s) 148
BmgBI CACGTC 1 cut(s) 181
BmgT120I GGNCC 1 cut(s) 54
BmiI GGNNCC 1 cut(s) 247
BmrFI CCNGG 1 cut(s) 58
BoxI GACNNNNGTC 1 cut(s) 141
BpuEI CTTGAG 1 cut(s) 281
BpuMI CCSGG 1 cut(s) 58
BsaJI CCNNGG 2 cut(s) 70, 249
BseDI CCNNGG 2 cut(s) 70, 249
BseGI GGATG 1 cut(s) 66
BseMII CTCAG 1 cut(s) 204
BseRI GAGGAG 3 cut(s) 146, 221, 278
BseSI GKGCMC 1 cut(s) 248
BshNI GGYRCC 1 cut(s) 245
BsiHKAI GWGCWC 1 cut(s) 227
BsiHKCI CYCGRG 1 cut(s) 148
BsiSI CCGG 1 cut(s) 57
BslFI GGGAC 1 cut(s) 73
BsmAI GTCTC 1 cut(s) 203
BsmFI GGGAC 1 cut(s) 73
BsoBI CYCGRG 1 cut(s) 148
Bsp1286I GDGCHC 2 cut(s) 227, 248
Bsp143I GATC 3 cut(s) 45, 84, 112
Bsp19I CCATGG 2 cut(s) 70, 249
BspCNI CTCAG 1 cut(s) 205
BspLI GGNNCC 1 cut(s) 247
BspPI GGATC 2 cut(s) 40, 120
BspT107I GGYRCC 1 cut(s) 245
BssECI CCNNGG 2 cut(s) 70, 249
BssMI GATC 3 cut(s) 45, 84, 112
BssT1I CCWWGG 2 cut(s) 70, 249
Bst4CI ACNGT 1 cut(s) 176
BstDEI CTNAG 1 cut(s) 213
BstDSI CCRYGG 2 cut(s) 70, 249
BstF5I GGATG 1 cut(s) 66
BstKTI GATC 3 cut(s) 48, 87, 115
BstMAI GTCTC 1 cut(s) 203
BstMBI GATC 3 cut(s) 45, 84, 112
BstPAI GACNNNNGTC 1 cut(s) 141
BstSCI CCNGG 1 cut(s) 56
BstSLI GKGCMC 1 cut(s) 248
BtgI CCRYGG 2 cut(s) 70, 249
BtrI CACGTC 1 cut(s) 181
BtsCI GGATG 1 cut(s) 66
BtsIMutI CAGTG 1 cut(s) 181
Cfr13I GGNCC 1 cut(s) 54
CviAII CATG 2 cut(s) 71, 250
CviJI RGCY 3 cut(s) 225, 238, 259
CviKI_1 RGCY 3 cut(s) 225, 238, 259
DdeI CTNAG 1 cut(s) 213
DpnI GATC 3 cut(s) 47, 86, 114
DpnII GATC 3 cut(s) 45, 84, 112
Ecl136II GAGCTC 1 cut(s) 225
Eco130I CCWWGG 2 cut(s) 70, 249
Eco24I GRGCYC 1 cut(s) 227
Eco47I GGWCC 1 cut(s) 54
Eco53kI GAGCTC 1 cut(s) 225
Eco88I CYCGRG 1 cut(s) 148
EcoICRI GAGCTC 1 cut(s) 225
EcoT14I CCWWGG 2 cut(s) 70, 249
EcoT38I GRGCYC 1 cut(s) 227
ErhI CCWWGG 2 cut(s) 70, 249
FaeI CATG 2 cut(s) 74, 253
FaiI YATR 3 cut(s) 44, 72, 251
FaqI GGGAC 1 cut(s) 73
FatI CATG 2 cut(s) 70, 249
FokI GGATG 1 cut(s) 53
FriOI GRGCYC 1 cut(s) 227
HapII CCGG 1 cut(s) 57
Hin1II CATG 2 cut(s) 74, 253
HindIII AAGCTT 1 cut(s) 257
HpaII CCGG 1 cut(s) 57
HphI GGTGA 1 cut(s) 215
Hpy188I TCNGA 1 cut(s) 222
Hpy188III TCNNGA 1 cut(s) 110
Hpy99I CGWCG 3 cut(s) 120, 160, 163
HpyAV CCTTC 1 cut(s) 193
HpyCH4III ACNGT 1 cut(s) 176
HpyCH4IV ACGT 2 cut(s) 62, 180
HpyF3I CTNAG 1 cut(s) 213
HpySE526I ACGT 2 cut(s) 62, 180
Hsp92II CATG 2 cut(s) 74, 253
Kzo9I GATC 3 cut(s) 45, 84, 112
LpnPI CCDG 2 cut(s) 70, 95
MaeII ACGT 2 cut(s) 62, 180
MaeIII GTNAC 1 cut(s) 176
MalI GATC 3 cut(s) 47, 86, 114
MboI GATC 3 cut(s) 45, 84, 112
MhlI GDGCHC 2 cut(s) 227, 248
MmeI TCCRAC 1 cut(s) 108
MnlI CCTC 7 cut(s) 124, 127, 144, 199, 208, 256, 259
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 2 cut(s) 70, 249
NdeII GATC 3 cut(s) 45, 84, 112
NlaIII CATG 2 cut(s) 74, 253
NlaIV GGNNCC 1 cut(s) 247
NmuCI GTSAC 1 cut(s) 176
PaeR7I CTCGAG 1 cut(s) 148
PcsI WCGNNNNNNNCGW 1 cut(s) 155
PfoI TCCNGGA 1 cut(s) 56
PshAI GACNNNNGTC 1 cut(s) 141
Psp124BI GAGCTC 1 cut(s) 227
PspN4I GGNNCC 1 cut(s) 247
PspPI GGNCC 1 cut(s) 54
PspXI VCTCGAGB 1 cut(s) 148
SacI GAGCTC 1 cut(s) 227
Sau3AI GATC 3 cut(s) 45, 84, 112
Sau96I GGNCC 1 cut(s) 54
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 2 cut(s) 227, 248
SetI ASST 7 cut(s) 65, 155, 183, 219, 227, 261, 270
Sfr274I CTCGAG 1 cut(s) 148
SinI GGWCC 1 cut(s) 54
SlaI CTCGAG 1 cut(s) 148
SmlI CTYRAG 2 cut(s) 148, 260
SmoI CTYRAG 2 cut(s) 148, 260
SstI GAGCTC 1 cut(s) 227
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 70, 249
TaaI ACNGT 1 cut(s) 176
TaiI ACGT 2 cut(s) 65, 183
TaqI TCGA 1 cut(s) 149
TscAI CASTG 1 cut(s) 181
TseFI GTSAC 1 cut(s) 176
Tsp45I GTSAC 1 cut(s) 176
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 181
VpaK11BI GGWCC 1 cut(s) 54
XhoI CTCGAG 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.