Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Forward (+)

3336626 .. 3337950

Gene Structure 1325 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1049100.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 747 bp

ATGTCGATCGCATTGAATAGCGCCGCCGCCAGGATCGGCGTCGCGCCGTCGTCTGGGTTCGCTCGAGGTGGGTTGATCTTCGATTCGCCGGAAAACCGCCGGAGAGTTACCGCCGGTGAGGTTACGGTTTGTTCTTCGAGTTCGTCGTCGATTGGGAAGAACAGCGACGATGGATCGGAGAGCAACGACGGCGGCGAAAATGACGAGGCTCAGAGCTCGTATAAAGGTCCGTTGGATATGATGAACGAGCTCGAGGAAGTTTTACCCGTGAGGAGAGGGATCTCGAAATACTACAACTACAAATCCAAGTCCTTTACGAGTCTAGCAGAAGCTTCATCTTCTTCCAACATTAAGGAGCTTGCAAAACCAGACAATGCCTACACCCGAAAACGCAGGAACGTCCTTGCTTCCAGTCACATGTGGGACAAGAACCGAACCTCCTTCCCGCTGAGAAGCAACGGCGGCGGAATTTCAAAGAGACTGATTCCGTCCAGTCGAAGCGCATTGGCTTTGGCTGTCAAGTTAAGCAGCTGCTCGGAAAGCAGTACTAGTAGCGCAAGCGAGGATTCCAATTCGAGCTCAAATCCAACGTCGCCGCGGCCGCCTCTCCCACCGGGTTACGCCTGTCCATTAGGAAGCTATGCAGCCTGGAGATCGTATTCATTGGCTGATCTGCAAGAATGTACCACCGCTACTACTGTAAATAGTTCGCGATTCTCGGCGGCCACCACTAAACCGAACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

249

Amino Acids

26.26

Weight (kDa)

9.17

Isoelectric Point (pI)

75.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	44, 598, 712
AclWI	GGATC	3 cut(s)	41, 181, 287
AcoI	YGGCCR	2 cut(s)	599, 723
AcsI	RAATTY	1 cut(s)	468
AcyI	GRCGYC	1 cut(s)	39
AfaI	GTAC	2 cut(s)	547, 685
AfiI	CCNNNNNNNGG	2 cut(s)	30, 53
AflIII	ACRYGT	2 cut(s)	417, 741
AgsI	TTSAA	2 cut(s)	16, 474
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	2 cut(s)	29, 647
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	7 cut(s)	216, 250, 332, 358, 531, 579, 639
AluI	AGCT	7 cut(s)	216, 250, 332, 358, 531, 579, 639
Alw21I	GWGCWC	3 cut(s)	218, 252, 581
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	3 cut(s)	41, 181, 287
Ama87I	CYCGRG	2 cut(s)	63, 251
AoxI	GGCC	2 cut(s)	599, 723
ApeKI	GCWGC	3 cut(s)	528, 531, 644
ApoI	RAATTY	1 cut(s)	468
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AspLEI	GCGC	4 cut(s)	23, 46, 503, 557
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	1 cut(s)	128
AvaI	CYCGRG	2 cut(s)	63, 251
AvaII	GGWCC	1 cut(s)	227
BanII	GRGCYC	3 cut(s)	218, 252, 581
Bbv12I	GWGCWC	3 cut(s)	218, 252, 581
BbvI	GCAGC	3 cut(s)	518, 540, 656
BccI	CCATC	1 cut(s)	164
BceAI	ACGGC	3 cut(s)	31, 205, 475
BciT130I	CCWGG	2 cut(s)	31, 649
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	472
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	2 cut(s)	323, 549
BfoI	RGCGCY	1 cut(s)	24
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	3 cut(s)	31, 615, 649
Bme18I	GGWCC	1 cut(s)	227
BmeT110I	CYCGRG	2 cut(s)	63, 251
BmgT120I	GGNCC	1 cut(s)	227
BmrFI	CCNGG	3 cut(s)	31, 615, 649
BpmI	CTGGAG	1 cut(s)	670
BpuMI	CCSGG	1 cut(s)	615
BsaHI	GRCGYC	1 cut(s)	39
BsaJI	CCNNGG	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	2 cut(s)	30, 53
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	2 cut(s)	411, 492
BseBI	CCWGG	2 cut(s)	31, 649
BseDI	CCNNGG	1 cut(s)	596
BseLI	CCNNNNNNNGG	2 cut(s)	30, 53
BseMII	CTCAG	2 cut(s)	224, 440
BseNI	ACTGG	2 cut(s)	411, 492
BseRI	GAGGAG	1 cut(s)	286
BseX3I	CGGCCG	1 cut(s)	599
BseXI	GCAGC	3 cut(s)	518, 540, 656
Bsh1236I	CGCG	3 cut(s)	44, 598, 712
Bsh1285I	CGRYCG	2 cut(s)	9, 602
BshFI	GGCC	2 cut(s)	601, 725
BsiEI	CGRYCG	2 cut(s)	9, 602
BsiHKAI	GWGCWC	3 cut(s)	218, 252, 581
BsiHKCI	CYCGRG	2 cut(s)	63, 251
BsiSI	CCGG	4 cut(s)	89, 100, 114, 614
BslFI	GGGAC	1 cut(s)	437
BslI	CCNNNNNNNGG	2 cut(s)	30, 53
BsmAI	GTCTC	1 cut(s)	472
BsmFI	GGGAC	1 cut(s)	437
BsnI	GGCC	2 cut(s)	601, 725
BsoBI	CYCGRG	2 cut(s)	63, 251
Bsp1286I	GDGCHC	3 cut(s)	218, 252, 581
Bsp143I	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
Bsp68I	TCGCGA	1 cut(s)	712
BspANI	GGCC	2 cut(s)	601, 725
BspCNI	CTCAG	2 cut(s)	223, 441
BspFNI	CGCG	3 cut(s)	44, 598, 712
BspPI	GGATC	3 cut(s)	41, 181, 287
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	2 cut(s)	411, 492
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
BssNI	GRCGYC	1 cut(s)	39
Bst2UI	CCWGG	2 cut(s)	31, 649
Bst4CI	ACNGT	2 cut(s)	127, 700
BstACI	GRCGYC	1 cut(s)	39
BstC8I	GCNNGC	2 cut(s)	360, 559
BstDEI	CTNAG	2 cut(s)	210, 449
BstDSI	CCRYGG	1 cut(s)	596
BstFNI	CGCG	3 cut(s)	44, 598, 712
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	4 cut(s)	23, 46, 503, 557
BstKTI	GATC	7 cut(s)	9, 36, 78, 176, 282, 656, 673
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
BstMCI	CGRYCG	2 cut(s)	9, 602
BstMWI	GCNNNNNNNGC	4 cut(s)	189, 462, 540, 601
BstNI	CCWGG	2 cut(s)	31, 649
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	3 cut(s)	29, 613, 647
BstUI	CGCG	3 cut(s)	44, 598, 712
BstV1I	GCAGC	3 cut(s)	518, 540, 656
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BstZI	CGGCCG	1 cut(s)	599
BsuRI	GGCC	2 cut(s)	601, 725
BtgI	CCRYGG	1 cut(s)	596
BtuMI	TCGCGA	1 cut(s)	712
Cac8I	GCNNGC	2 cut(s)	360, 559
CciNI	GCGGCCGC	1 cut(s)	599
CfoI	GCGC	4 cut(s)	23, 46, 503, 557
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	227
Cfr42I	CCGCGG	1 cut(s)	599
CseI	GACGC	1 cut(s)	28
Csp6I	GTAC	2 cut(s)	546, 684
CviAII	CATG	1 cut(s)	418
CviQI	GTAC	2 cut(s)	546, 684
DdeI	CTNAG	2 cut(s)	210, 449
DpnI	GATC	7 cut(s)	8, 35, 77, 175, 281, 655, 672
DpnII	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
EaeI	YGGCCR	2 cut(s)	599, 723
EagI	CGGCCG	1 cut(s)	599
EciI	GGCGGA	1 cut(s)	480
Ecl136II	GAGCTC	3 cut(s)	216, 250, 579
EclXI	CGGCCG	1 cut(s)	599
Eco24I	GRGCYC	3 cut(s)	218, 252, 581
Eco47I	GGWCC	1 cut(s)	227
Eco52I	CGGCCG	1 cut(s)	599
Eco53kI	GAGCTC	3 cut(s)	216, 250, 579
Eco88I	CYCGRG	2 cut(s)	63, 251
EcoICRI	GAGCTC	3 cut(s)	216, 250, 579
EcoRII	CCWGG	2 cut(s)	29, 647
EcoT38I	GRGCYC	3 cut(s)	218, 252, 581
FaeI	CATG	1 cut(s)	421
FaiI	YATR	4 cut(s)	222, 239, 419, 642
FaqI	GGGAC	1 cut(s)	437
FatI	CATG	1 cut(s)	417
FauI	CCCGC	1 cut(s)	453
FriOI	GRGCYC	3 cut(s)	218, 252, 581
FspBI	CTAG	2 cut(s)	323, 549
GlaI	GCGC	4 cut(s)	22, 45, 502, 556
GsuI	CTGGAG	1 cut(s)	670
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	2 cut(s)	601, 725
HapII	CCGG	4 cut(s)	89, 100, 114, 614
HgaI	GACGC	1 cut(s)	28
HhaI	GCGC	4 cut(s)	23, 46, 503, 557
Hin1I	GRCGYC	1 cut(s)	39
Hin1II	CATG	1 cut(s)	421
Hin6I	GCGC	4 cut(s)	21, 44, 501, 555
HinP1I	GCGC	4 cut(s)	21, 44, 501, 555
HindIII	AAGCTT	1 cut(s)	330
HinfI	GANTC	5 cut(s)	83, 319, 484, 566, 714
HpaII	CCGG	4 cut(s)	89, 100, 114, 614
HphI	GGTGA	1 cut(s)	128
Hpy188I	TCNGA	3 cut(s)	178, 213, 538
Hpy188III	TCNNGA	2 cut(s)	283, 711
Hpy99I	CGWCG	7 cut(s)	44, 52, 148, 151, 170, 191, 595
HpyAV	CCTTC	1 cut(s)	451
HpyCH4III	ACNGT	2 cut(s)	127, 700
HpyCH4IV	ACGT	3 cut(s)	399, 590, 741
HpyCH4V	TGCA	3 cut(s)	362, 644, 676
HpyF10VI	GCNNNNNNNGC	4 cut(s)	189, 462, 540, 601
HpyF3I	CTNAG	2 cut(s)	210, 449
HpySE526I	ACGT	3 cut(s)	399, 590, 741
Hsp92I	GRCGYC	1 cut(s)	39
Hsp92II	CATG	1 cut(s)	421
HspAI	GCGC	4 cut(s)	21, 44, 501, 555
KspI	CCGCGG	1 cut(s)	599
Kzo9I	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
LmnI	GCTCC	1 cut(s)	355
Lsp1109I	GCAGC	3 cut(s)	518, 540, 656
MaeI	CTAG	2 cut(s)	323, 549
MaeII	ACGT	3 cut(s)	399, 590, 741
MaeIII	GTNAC	4 cut(s)	106, 121, 413, 617
MalI	GATC	7 cut(s)	8, 35, 77, 175, 281, 655, 672
MboI	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
MboII	GAAGA	5 cut(s)	70, 126, 169, 330, 333
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	3 cut(s)	218, 252, 581
MluCI	AATT	2 cut(s)	468, 571
MlyI	GAGTC	1 cut(s)	328
MmeI	TCCRAC	3 cut(s)	213, 369, 611
MnlI	CCTC	9 cut(s)	59, 112, 199, 247, 264, 269, 448, 556, 615
MseI	TTAA	2 cut(s)	351, 524
MspA1I	CMGCKG	3 cut(s)	448, 531, 598
MspI	CCGG	4 cut(s)	89, 100, 114, 614
MspR9I	CCNGG	3 cut(s)	31, 615, 649
MvaI	CCWGG	2 cut(s)	31, 649
MvnI	CGCG	3 cut(s)	44, 598, 712
MwoI	GCNNNNNNNGC	4 cut(s)	189, 462, 540, 601
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
NlaIII	CATG	1 cut(s)	421
NmeAIII	GCCGAG	1 cut(s)	698
NmuCI	GTSAC	1 cut(s)	413
NotI	GCGGCCGC	1 cut(s)	599
NruI	TCGCGA	1 cut(s)	712
NspI	RCATGY	1 cut(s)	421
PaeR7I	CTCGAG	2 cut(s)	63, 251
PciI	ACATGT	1 cut(s)	417
PcsI	WCGNNNNNNNCGW	2 cut(s)	143, 192
PfeI	GAWTC	4 cut(s)	83, 484, 566, 714
Ple19I	CGATCG	1 cut(s)	9
PleI	GAGTC	1 cut(s)	327
PpsI	GAGTC	1 cut(s)	327
PscI	ACATGT	1 cut(s)	417
Psp124BI	GAGCTC	3 cut(s)	218, 252, 581
Psp6I	CCWGG	2 cut(s)	29, 647
PspGI	CCWGG	2 cut(s)	29, 647
PspPI	GGNCC	1 cut(s)	227
PspXI	VCTCGAGB	2 cut(s)	63, 251
PsuI	RGATCY	1 cut(s)	279
PvuI	CGATCG	1 cut(s)	9
PvuII	CAGCTG	1 cut(s)	531
RruI	TCGCGA	1 cut(s)	712
RsaI	GTAC	2 cut(s)	547, 685
RsaNI	GTAC	2 cut(s)	546, 684
SacI	GAGCTC	3 cut(s)	218, 252, 581
SacII	CCGCGG	1 cut(s)	599
SaqAI	TTAA	2 cut(s)	351, 524
Sau3AI	GATC	7 cut(s)	6, 33, 75, 173, 279, 653, 670
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	328
ScrFI	CCNGG	3 cut(s)	31, 615, 649
SduI	GDGCHC	3 cut(s)	218, 252, 581
Sfr274I	CTCGAG	2 cut(s)	63, 251
Sfr303I	CCGCGG	1 cut(s)	599
SgrAI	CRCCGGYG	1 cut(s)	113
SgrBI	CCGCGG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	227
SlaI	CTCGAG	2 cut(s)	63, 251
SmlI	CTYRAG	2 cut(s)	63, 251
SmoI	CTYRAG	2 cut(s)	63, 251
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	2 cut(s)	468, 571
SspMI	CTAG	2 cut(s)	323, 549
SstI	GAGCTC	3 cut(s)	218, 252, 581
StyD4I	CCNGG	3 cut(s)	29, 613, 647
TaaI	ACNGT	2 cut(s)	127, 700
TaiI	ACGT	3 cut(s)	402, 593, 744
TaqI	TCGA	9 cut(s)	5, 64, 81, 137, 149, 252, 284, 496, 575
TasI	AATT	2 cut(s)	468, 571
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	8 cut(s)	26, 29, 195, 465, 598, 601, 604, 725
TfiI	GAWTC	4 cut(s)	83, 484, 566, 714
Tru1I	TTAA	2 cut(s)	351, 524
Tru9I	TTAA	2 cut(s)	351, 524
TseFI	GTSAC	1 cut(s)	413
TseI	GCWGC	3 cut(s)	528, 531, 644
Tsp45I	GTSAC	1 cut(s)	413
TspDTI	ATGAA	3 cut(s)	257, 324, 651
TspGWI	ACGGA	2 cut(s)	219, 477
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	421
XhoI	CTCGAG	2 cut(s)	63, 251
XspI	CTAG	2 cut(s)	323, 549
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.