Rw6G044230

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000728
Physical Location & Seq
Reverse (-)
67393016 .. 67394124
1109 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G044230.1

Sequence Viewer

Length: 726 bp
ATGTCGATCGCATTGGATAGGATCGGTGATGTCACGCCCTCGTCTGGCTTCATGCACGGTGGGGCCATGTCTTTTGGCTTGATATTCGAGTCGTCGCCGGGAGAGGATAGAGCTCCGGCCGTTGCGTCTTCCTCGTCGACGTCGTCGTCATCGATTGGGAAGAACAGCGACGGGTTGTCGGACGAAGGCGACGAGGAAAATGACGAGGCTCAGAGCCCGTATAATGGTCCTTTGGATATGATGGAGGCTTTGGAGGAGGTTTTGCCTATCAGGAGAGGCATCTCCAAGTTCTATAACTACAAATCCAAGTCCTTCACGAGTCTGGCAGATGTTTCAACTTCTTCCTCCATTAAAGAGATTGCGAAGCCAGATAATGCCTATACCAGGAAACGCAGGAACCTGCTCGCTTCGAATCTCATCTGGGACAAGAATCGGAATTCCCCACTGAGTTGTAGGGGTGGGATATCAAAGTCCTCCTCAAAGAGAACAATCACCGCAAGTCAAAGCACCTTGGCTTTGGCCGTGGCAATGTGCAGCTCGGAAGCCAGTCCCAGTACAAGTGGTGATTCCAATTCAAGTTCCCTTACTCCTCCATCCTTCAATAAACTCGGAAATCACGTTGCTTGGCGATCATTATCCTTGGCTGATTTGCAAGAATGTGCCACTTCTGCAGCTGTAAATACCACTTCTCGCTTCTTTCCTTCAAAACCAAATTTGCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

241

Amino Acids

25.54

Weight (kDa)

6.16

Isoelectric Point (pI)

67.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AatII GACGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 408
AccI GTMKAC 1 cut(s) 137
AciI CCGC 1 cut(s) 495
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 2 cut(s) 117, 519
AcsI RAATTY 2 cut(s) 436, 712
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 556
AfiI CCNNNNNNNGG 3 cut(s) 44, 224, 384
AgsI TTSAA 4 cut(s) 336, 576, 601, 705
AhdI GACNNNNNGTC 1 cut(s) 175
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 3 cut(s) 113, 537, 674
AluI AGCT 3 cut(s) 113, 537, 674
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 1 cut(s) 29
AoxI GGCC 3 cut(s) 63, 117, 519
ApeKI GCWGC 3 cut(s) 534, 671, 718
ApoI RAATTY 2 cut(s) 436, 712
AspS9I GGNCC 2 cut(s) 63, 227
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 38, 484, 575
AsuII TTCGAA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 227
BanII GRGCYC 2 cut(s) 115, 218
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 546, 683
BccI CCATC 2 cut(s) 235, 601
BceAI ACGGC 2 cut(s) 104, 506
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 669
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 3 cut(s) 535, 672, 719
BlsI GCNGC 3 cut(s) 536, 673, 720
Bme1390I CCNGG 2 cut(s) 99, 385
Bme18I GGWCC 1 cut(s) 227
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgT120I GGNCC 2 cut(s) 63, 227
BmiI GGNNCC 2 cut(s) 64, 398
BmrFI CCNGG 2 cut(s) 99, 385
BmrI ACTGGG 1 cut(s) 546
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 546
BpiI GAAGAC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 99
Bsa29I ATCGAT 1 cut(s) 152
BsaBI GATNNNNATC 1 cut(s) 634
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 510, 522, 639
Bsc4I CCNNNNNNNGG 3 cut(s) 44, 224, 384
Bse1I ACTGG 2 cut(s) 546, 552
Bse3DI GCAATG 1 cut(s) 534
Bse8I GATNNNNATC 1 cut(s) 634
BseBI CCWGG 1 cut(s) 385
BseCI ATCGAT 1 cut(s) 152
BseDI CCNNGG 3 cut(s) 510, 522, 639
BseGI GGATG 1 cut(s) 593
BseJI GATNNNNATC 1 cut(s) 634
BseLI CCNNNNNNNGG 3 cut(s) 44, 224, 384
BseMI GCAATG 1 cut(s) 534
BseMII CTCAG 2 cut(s) 224, 437
BseNI ACTGG 2 cut(s) 546, 552
BseRI GAGGAG 3 cut(s) 269, 466, 579
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 546, 683
BsgI GTGCAG 1 cut(s) 553
Bsh1285I CGRYCG 2 cut(s) 9, 120
BshFI GGCC 3 cut(s) 65, 119, 521
BshVI ATCGAT 1 cut(s) 152
BsiEI CGRYCG 2 cut(s) 9, 120
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 98, 116
BslFI GGGAC 2 cut(s) 437, 534
BslI CCNNNNNNNGG 3 cut(s) 44, 224, 384
BsmFI GGGAC 2 cut(s) 437, 534
BsnI GGCC 3 cut(s) 65, 119, 521
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 2 cut(s) 115, 218
Bsp143I GATC 3 cut(s) 6, 21, 629
BspACI CCGC 1 cut(s) 495
BspANI GGCC 3 cut(s) 65, 119, 521
BspCNI CTCAG 2 cut(s) 223, 438
BspDI ATCGAT 1 cut(s) 152
BspLI GGNNCC 2 cut(s) 64, 398
BspMAI CTGCAG 1 cut(s) 673
BspMI ACCTGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 534
BsrI ACTGG 2 cut(s) 546, 552
BssECI CCNNGG 3 cut(s) 510, 522, 639
BssMI GATC 3 cut(s) 6, 21, 629
BssNI GRCGYC 1 cut(s) 140
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 2 cut(s) 510, 639
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 210, 446
BstDSI CCRYGG 1 cut(s) 522
BstENI CCTNNNNNAGG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 593
BstKTI GATC 3 cut(s) 9, 24, 632
BstMBI GATC 3 cut(s) 6, 21, 629
BstMCI CGRYCG 2 cut(s) 9, 120
BstMWI GCNNNNNNNGC 1 cut(s) 668
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 97, 383
BstSFI CTRYAG 1 cut(s) 669
BstV1I GCAGC 2 cut(s) 546, 683
BstV2I GAAGAC 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 117
Bsu15I ATCGAT 1 cut(s) 152
BsuRI GGCC 3 cut(s) 65, 119, 521
BsuTUI ATCGAT 1 cut(s) 152
BtgI CCRYGG 1 cut(s) 522
BtsCI GGATG 1 cut(s) 593
BtsIMutI CAGTG 1 cut(s) 443
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 405
Cfr13I GGNCC 2 cut(s) 63, 227
ClaI ATCGAT 1 cut(s) 152
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 555
CviAII CATG 2 cut(s) 52, 67
CviQI GTAC 1 cut(s) 555
DdeI CTNAG 2 cut(s) 210, 446
DpnI GATC 3 cut(s) 8, 23, 631
DpnII GATC 3 cut(s) 6, 21, 629
DrdI GACNNNNNNGTC 1 cut(s) 145
DriI GACNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 2 cut(s) 117, 519
EagI CGGCCG 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 510, 639
Eco24I GRGCYC 2 cut(s) 115, 218
Eco32I GATATC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 227
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 2 cut(s) 510, 639
EcoT38I GRGCYC 2 cut(s) 115, 218
ErhI CCWWGG 2 cut(s) 510, 639
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 6 cut(s) 53, 68, 222, 239, 294, 381
FaqI GGGAC 2 cut(s) 437, 534
FatI CATG 2 cut(s) 51, 66
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 535, 672, 719
FokI GGATG 1 cut(s) 580
FriOI GRGCYC 2 cut(s) 115, 218
Fsp4HI GCNGC 3 cut(s) 535, 672, 719
GluI GCNGC 3 cut(s) 535, 672, 719
HaeIII GGCC 3 cut(s) 65, 119, 521
HapII CCGG 2 cut(s) 98, 116
HgaI GACGC 1 cut(s) 114
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 55, 70
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 5 cut(s) 89, 319, 412, 430, 566
HpaII CCGG 2 cut(s) 98, 116
HphI GGTGA 3 cut(s) 38, 484, 575
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 5 cut(s) 181, 213, 435, 541, 611
Hpy188III TCNNGA 2 cut(s) 271, 316
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 7 cut(s) 97, 139, 142, 145, 148, 173, 194
HpyAV CCTTC 4 cut(s) 179, 322, 607, 711
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 140, 618
HpyCH4V TGCA 5 cut(s) 55, 534, 652, 671, 718
HpyF10VI GCNNNNNNNGC 1 cut(s) 668
HpyF3I CTNAG 2 cut(s) 210, 446
HpySE526I ACGT 2 cut(s) 140, 618
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 55, 70
Kzo9I GATC 3 cut(s) 6, 21, 629
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 546, 683
LweI GCATC 1 cut(s) 288
MaeII ACGT 2 cut(s) 140, 618
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 8, 23, 631
MboI GATC 3 cut(s) 6, 21, 629
MboII GAAGA 3 cut(s) 120, 172, 333
MhlI GDGCHC 2 cut(s) 115, 218
MluCI AATT 3 cut(s) 436, 571, 712
MlyI GAGTC 2 cut(s) 98, 328
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 674
MspI CCGG 2 cut(s) 98, 116
MspR9I CCNGG 2 cut(s) 99, 385
MvaI CCWGG 1 cut(s) 385
MwoI GCNNNNNNNGC 1 cut(s) 668
NciI CCSGG 1 cut(s) 99
NdeII GATC 3 cut(s) 6, 21, 629
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 2 cut(s) 64, 398
NmuCI GTSAC 1 cut(s) 31
NspV TTCGAA 1 cut(s) 410
PcsI WCGNNNNNNNCGW 5 cut(s) 140, 143, 149, 189, 615
PfeI GAWTC 3 cut(s) 412, 430, 566
PflFI GACNNNGTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 536, 673, 720
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 97, 327
PpsI GAGTC 2 cut(s) 97, 327
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 64, 398
PspPI GGNCC 2 cut(s) 63, 227
PstI CTGCAG 1 cut(s) 673
PsyI GACNNNGTC 1 cut(s) 142
PvuI CGATCG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 674
RsaI GTAC 1 cut(s) 556
RsaNI GTAC 1 cut(s) 555
SacI GAGCTC 1 cut(s) 115
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 3 cut(s) 535, 672, 719
Sau3AI GATC 3 cut(s) 6, 21, 629
Sau96I GGNCC 2 cut(s) 63, 227
SchI GAGTC 2 cut(s) 98, 328
ScrFI CCNGG 2 cut(s) 99, 385
SduI GDGCHC 2 cut(s) 115, 218
SetI ASST 8 cut(s) 115, 143, 261, 402, 512, 539, 621, 676
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 669
SfuI TTCGAA 1 cut(s) 410
SgrDI CGTCGACG 1 cut(s) 136
SinI GGWCC 1 cut(s) 227
Sse9I AATT 3 cut(s) 436, 571, 712
SsiI CCGC 1 cut(s) 495
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 97, 383
StyI CCWWGG 2 cut(s) 510, 639
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 2 cut(s) 143, 621
TaqI TCGA 5 cut(s) 5, 87, 137, 152, 410
TasI AATT 3 cut(s) 436, 571, 712
TatI WGTACW 1 cut(s) 554
TfiI GAWTC 3 cut(s) 412, 430, 566
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 450
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 534, 671, 718
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 450
Tth111I GACNNNGTC 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 382
XapI RAATTY 2 cut(s) 436, 712
XmiI GTMKAC 1 cut(s) 137
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.