Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

65348011 .. 65348301

Gene Structure 291 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG424000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 291 bp

ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACGGTCCGGGAGATTCATCCATGGGATGCCTTGTATTTTGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGACGTCCTCGTCGGTTGGTAATAACAGTGACGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGGTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCGTGGACCAGCTTGAGGAGGTTTTGCCTGTCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

96

Amino Acids

10.34

Weight (kDa)

4.29

Isoelectric Point (pI)

58.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AatII	GACGTC	1 cut(s)	161
AclWI	GGATC	2 cut(s)	40, 126
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	56, 268
AluBI	AGCT	3 cut(s)	153, 231, 265
AluI	AGCT	3 cut(s)	153, 231, 265
Alw21I	GWGCWC	1 cut(s)	233
AlwI	GGATC	2 cut(s)	40, 126
AoxI	GGCC	1 cut(s)	242
AspS9I	GGNCC	3 cut(s)	54, 242, 259
AsuC2I	CCSGG	1 cut(s)	58
AsuHPI	GGTGA	2 cut(s)	221, 230
AvaII	GGWCC	2 cut(s)	54, 259
BanII	GRGCYC	1 cut(s)	233
Bbv12I	GWGCWC	1 cut(s)	233
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	1 cut(s)	58
BfaI	CTAG	1 cut(s)	147
Bme1390I	CCNGG	1 cut(s)	58
Bme18I	GGWCC	2 cut(s)	54, 259
BmgT120I	GGNCC	3 cut(s)	54, 242, 259
BmrFI	CCNGG	1 cut(s)	58
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	1 cut(s)	58
BsaBI	GATNNNNATC	1 cut(s)	117
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	3 cut(s)	50, 70, 255
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 268
Bse8I	GATNNNNATC	1 cut(s)	117
BseDI	CCNNGG	3 cut(s)	50, 70, 255
BseGI	GGATG	2 cut(s)	66, 81
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	2 cut(s)	56, 268
BseRI	GAGGAG	3 cut(s)	152, 227, 284
BshFI	GGCC	1 cut(s)	244
BsiHKAI	GWGCWC	1 cut(s)	233
BsiSI	CCGG	1 cut(s)	57
BslI	CCNNNNNNNGG	2 cut(s)	56, 268
BsnI	GGCC	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	4 cut(s)	45, 90, 112, 118
Bsp19I	CCATGG	1 cut(s)	70
BspANI	GGCC	1 cut(s)	244
BspPI	GGATC	2 cut(s)	40, 126
BssECI	CCNNGG	3 cut(s)	50, 70, 255
BssMI	GATC	4 cut(s)	45, 90, 112, 118
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	1 cut(s)	70
Bst4CI	ACNGT	3 cut(s)	54, 182, 256
BstACI	GRCGYC	1 cut(s)	158
BstDSI	CCRYGG	3 cut(s)	50, 70, 255
BstF5I	GGATG	2 cut(s)	66, 81
BstKTI	GATC	4 cut(s)	48, 93, 115, 121
BstMBI	GATC	4 cut(s)	45, 90, 112, 118
BstSCI	CCNGG	1 cut(s)	56
BsuRI	GGCC	1 cut(s)	244
BtgI	CCRYGG	3 cut(s)	50, 70, 255
BtsCI	GGATG	2 cut(s)	66, 81
BtsIMutI	CAGTG	1 cut(s)	187
Cfr13I	GGNCC	3 cut(s)	54, 242, 259
CpoI	CGGWCCG	1 cut(s)	54
CspI	CGGWCCG	1 cut(s)	54
CviAII	CATG	1 cut(s)	71
CviJI	RGCY	4 cut(s)	153, 231, 244, 265
CviKI_1	RGCY	4 cut(s)	153, 231, 244, 265
DpnI	GATC	4 cut(s)	47, 92, 114, 120
DpnII	GATC	4 cut(s)	45, 90, 112, 118
DraI	TTTAAA	1 cut(s)	238
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	231
Eco130I	CCWWGG	1 cut(s)	70
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	54, 259
Eco53kI	GAGCTC	1 cut(s)	231
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	242
EcoT14I	CCWWGG	1 cut(s)	70
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	1 cut(s)	70
FaeI	CATG	1 cut(s)	74
FaiI	YATR	2 cut(s)	44, 72
FatI	CATG	1 cut(s)	70
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	2 cut(s)	53, 88
FriOI	GRGCYC	1 cut(s)	233
FspBI	CTAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	244
HapII	CCGG	1 cut(s)	57
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	1 cut(s)	74
HinfI	GANTC	3 cut(s)	63, 143, 188
HpaII	CCGG	1 cut(s)	57
HphI	GGTGA	2 cut(s)	221, 230
Hpy166II	GTNNAC	1 cut(s)	259
Hpy188I	TCNGA	2 cut(s)	205, 228
Hpy188III	TCNNGA	1 cut(s)	116
Hpy8I	GTNNAC	1 cut(s)	259
Hpy99I	CGWCG	4 cut(s)	126, 160, 169, 205
HpyCH4III	ACNGT	3 cut(s)	54, 182, 256
HpyCH4IV	ACGT	1 cut(s)	158
HpySE526I	ACGT	1 cut(s)	158
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	1 cut(s)	74
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	4 cut(s)	45, 90, 112, 118
LpnPI	CCDG	3 cut(s)	70, 101, 275
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	182
MalI	GATC	4 cut(s)	47, 92, 114, 120
MboI	GATC	4 cut(s)	45, 90, 112, 118
MhlI	GDGCHC	1 cut(s)	233
MlyI	GAGTC	2 cut(s)	137, 197
MmeI	TCCRAC	2 cut(s)	114, 183
MnlI	CCTC	9 cut(s)	130, 133, 172, 199, 205, 208, 214, 262, 265
MseI	TTAA	1 cut(s)	237
MspI	CCGG	1 cut(s)	57
MspR9I	CCNGG	1 cut(s)	58
NciI	CCSGG	1 cut(s)	58
NcoI	CCATGG	1 cut(s)	70
NdeII	GATC	4 cut(s)	45, 90, 112, 118
NlaIII	CATG	1 cut(s)	74
NmuCI	GTSAC	1 cut(s)	182
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	1 cut(s)	63
PfoI	TCCNGGA	1 cut(s)	56
PleI	GAGTC	2 cut(s)	137, 196
PpsI	GAGTC	2 cut(s)	137, 196
Psp124BI	GAGCTC	1 cut(s)	233
PspPI	GGNCC	3 cut(s)	54, 242, 259
Rsr2I	CGGWCCG	1 cut(s)	54
RsrII	CGGWCCG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	233
SaqAI	TTAA	1 cut(s)	237
Sau3AI	GATC	4 cut(s)	45, 90, 112, 118
Sau96I	GGNCC	3 cut(s)	54, 242, 259
SchI	GAGTC	2 cut(s)	137, 197
ScrFI	CCNGG	1 cut(s)	58
SduI	GDGCHC	1 cut(s)	233
SetI	ASST	6 cut(s)	155, 161, 225, 233, 267, 276
SfaNI	GCATC	1 cut(s)	66
SinI	GGWCC	2 cut(s)	54, 259
SmlI	CTYRAG	1 cut(s)	266
SmoI	CTYRAG	1 cut(s)	266
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	1 cut(s)	56
StyI	CCWWGG	1 cut(s)	70
TaaI	ACNGT	3 cut(s)	54, 182, 256
TaiI	ACGT	1 cut(s)	161
TaqI	TCGA	1 cut(s)	155
TfiI	GAWTC	1 cut(s)	63
Tru1I	TTAA	1 cut(s)	237
Tru9I	TTAA	1 cut(s)	237
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	1 cut(s)	182
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	1 cut(s)	187
VpaK11BI	GGWCC	2 cut(s)	54, 259
XspI	CTAG	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.