RchiOBHm_Chr6g0269001

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0000728
Physical Location & Seq
Reverse (-)
26210882 .. 26211688
807 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24129

Sequence Viewer

Length: 198 bp
ATGAGGGGTTTACTTTCTCCATCGCGAGGCAGACACCATATCTCCTCCTTCCTCTTTGCTGTCATTATCATTCCACATCTCCTCCTTCCTCTTCTTCGGTGTCTGGTTCTCCTTCATCTTCCCTCAGATTGCCTTCTTCTTCAGCTTGTCACTGTTGACCTCCTTCAATTCATGGATTCTCGCCGACCTCGCCTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

65

Amino Acids

7.47

Weight (kDa)

11.23

Isoelectric Point (pI)

70.58

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 25
AcuI CTGAAG 1 cut(s) 125
AfiI CCNNNNNNNGG 1 cut(s) 26
AgsI TTSAA 1 cut(s) 167
AluBI AGCT 1 cut(s) 145
AluI AGCT 1 cut(s) 145
ArsI GACNNNNNNTTYG 1 cut(s) 177
BccI CCATC 1 cut(s) 28
BsaXI ACNNNNNCTCC 4 cut(s) 26, 56, 66, 96
Bsc4I CCNNNNNNNGG 1 cut(s) 26
BseLI CCNNNNNNNGG 1 cut(s) 26
BseMII CTCAG 1 cut(s) 138
BseRI GAGGAG 2 cut(s) 34, 71
Bsh1236I CGCG 1 cut(s) 25
BslI CCNNNNNNNGG 1 cut(s) 26
Bsp68I TCGCGA 1 cut(s) 25
BspCNI CTCAG 1 cut(s) 137
BspFNI CGCG 1 cut(s) 25
Bst4CI ACNGT 1 cut(s) 154
Bst6I CTCTTC 1 cut(s) 96
BstDEI CTNAG 1 cut(s) 124
BstFNI CGCG 1 cut(s) 25
BstMWI GCNNNNNNNGC 1 cut(s) 189
BstUI CGCG 1 cut(s) 25
BtgZI GCGATG 1 cut(s) 6
BtsIMutI CAGTG 1 cut(s) 150
BtuMI TCGCGA 1 cut(s) 25
CviAII CATG 1 cut(s) 172
CviJI RGCY 1 cut(s) 145
CviKI_1 RGCY 1 cut(s) 145
DdeI CTNAG 1 cut(s) 124
Eam1104I CTCTTC 1 cut(s) 96
EarI CTCTTC 1 cut(s) 96
Eco57I CTGAAG 1 cut(s) 125
FaeI CATG 1 cut(s) 175
FaiI YATR 2 cut(s) 39, 173
FatI CATG 1 cut(s) 171
Hin1II CATG 1 cut(s) 175
HincII GTYRAC 1 cut(s) 157
HindII GTYRAC 1 cut(s) 157
HinfI GANTC 1 cut(s) 176
Hpy166II GTNNAC 2 cut(s) 11, 157
Hpy188I TCNGA 1 cut(s) 127
Hpy188III TCNNGA 1 cut(s) 24
Hpy8I GTNNAC 2 cut(s) 11, 157
HpyAV CCTTC 5 cut(s) 58, 95, 122, 143, 173
HpyCH4III ACNGT 1 cut(s) 154
HpyF10VI GCNNNNNNNGC 1 cut(s) 189
HpyF3I CTNAG 1 cut(s) 124
Hsp92II CATG 1 cut(s) 175
LpnPI CCDG 1 cut(s) 89
MaeIII GTNAC 1 cut(s) 148
MboII GAAGA 5 cut(s) 83, 86, 110, 128, 131
MluCI AATT 1 cut(s) 167
MnlI CCTC 8 cut(s) 20, 55, 62, 92, 99, 133, 170, 198
MvnI CGCG 1 cut(s) 25
MwoI GCNNNNNNNGC 1 cut(s) 189
NlaIII CATG 1 cut(s) 175
NmuCI GTSAC 1 cut(s) 148
NruI TCGCGA 1 cut(s) 25
PfeI GAWTC 1 cut(s) 176
RruI TCGCGA 1 cut(s) 25
SetI ASST 3 cut(s) 147, 162, 190
SgeI CNNG 6 cut(s) 36, 38, 116, 158, 184, 192
Sse9I AATT 1 cut(s) 167
TaaI ACNGT 1 cut(s) 154
TasI AATT 1 cut(s) 167
TfiI GAWTC 1 cut(s) 176
TscAI CASTG 1 cut(s) 157
TseFI GTSAC 1 cut(s) 148
Tsp45I GTSAC 1 cut(s) 148
TspDTI ATGAA 2 cut(s) 104, 160
TspRI CASTG 1 cut(s) 157
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.