Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr02

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

7223992 .. 7226616

Gene Structure 2625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD02G1091300.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 759 bp

ATGTCAATCGCTCTACAGAGAAACGGCGGTGGCGGCAATAATATGATCCGACGGCCGAGGTTCATCCACGGGGCGCCTTGCATCCCCATCCACGACTCGTCGGAAAATAAGGGGTTTGCTCAAGATCGTCGTCTTGACCAGGAGGACTCTTGCAGCAGCTCGTCGTCTTCAGTTGGAAGGAACAGCGACTCGTCCGATGGGTCGTCGGAGGGGGAGGAATCCGGTGAGGCTGAGGTGCAGAGCTCGCTTAAAGGACCGTTGGACACCATGGACCAGCTCGAGGAGGTTTTGCCTGTCAAAAATCAAGTTGGGAGAGGTATATCCAAGTTTTATAGCGGTAAATCAAAGTCCTTCACAAGCCTAGCAGATATCTCGTCTGTTTCTTCTGTCAAGGAACTTGCAAAGCCAAAAAGCCGTTATACCAAGAAGCGCAAGAATATATTAGCCCAGAATTATTTTCAGGATAAAAACTGCAATGACTTATCAAAGAGACCAGCTGCTAACTCTAGTCGAGCATCGTTTCTTATTGGGGAGACTTTGAGCCGCTCCCCTATCTATAGCAACGGGGAGGGATCCAACTCAATTTCACCATCACCTTCTTCCTGTCTTCCACCTCTGCCTCCACACGGTAGACGATCACCTGATAAAGAACCATCACCACCTCTTCCTCGACGGAGTTCTCCTTGGAGATCATTCTCTCTTTCTGATCTGCAGTGCATCGCTGCAGAAACACCTGACGTAACTGGCGTGGGAGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

253

Amino Acids

27.09

Weight (kDa)

8.96

Isoelectric Point (pI)

78.72

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	73
AccBSI	CCGCTC	1 cut(s)	546
AccI	GTMKAC	1 cut(s)	631
AciI	CCGC	4 cut(s)	27, 33, 336, 544
AclWI	GGATC	3 cut(s)	40, 567, 580
AcoI	YGGCCR	1 cut(s)	53
AcuI	CTGAAG	1 cut(s)	153
AcyI	GRCGYC	1 cut(s)	74
AfiI	CCNNNNNNNGG	2 cut(s)	280, 626
AjnI	CCWGG	1 cut(s)	138
AluBI	AGCT	4 cut(s)	159, 243, 277, 497
AluI	AGCT	4 cut(s)	159, 243, 277, 497
Alw21I	GWGCWC	1 cut(s)	245
Alw26I	GTCTC	2 cut(s)	484, 527
AlwI	GGATC	3 cut(s)	40, 567, 580
Ama87I	CYCGRG	1 cut(s)	278
AoxI	GGCC	1 cut(s)	53
ApeKI	GCWGC	4 cut(s)	153, 156, 497, 722
AspLEI	GCGC	2 cut(s)	76, 432
AspS9I	GGNCC	2 cut(s)	254, 271
AsuHPI	GGTGA	5 cut(s)	236, 579, 585, 630, 648
AvaI	CYCGRG	1 cut(s)	278
AvaII	GGWCC	2 cut(s)	254, 271
BamHI	GGATCC	1 cut(s)	572
BanI	GGYRCC	1 cut(s)	73
BanII	GRGCYC	1 cut(s)	245
BbsI	GAAGAC	2 cut(s)	159, 599
Bbv12I	GWGCWC	1 cut(s)	245
BbvCI	CCTCAGC	1 cut(s)	231
BbvI	GCAGC	4 cut(s)	165, 168, 484, 709
BccI	CCATC	4 cut(s)	95, 191, 598, 661
BceAI	ACGGC	3 cut(s)	40, 68, 399
BcgI	CGANNNNNNTGC	2 cut(s)	354, 388
BciT130I	CCWGG	1 cut(s)	140
BcoDI	GTCTC	2 cut(s)	484, 527
BfaI	CTAG	2 cut(s)	362, 507
BfmI	CTRYAG	4 cut(s)	14, 556, 710, 723
BfoI	RGCGCY	1 cut(s)	77
BisI	GCNGC	6 cut(s)	34, 154, 157, 498, 544, 723
BlsI	GCNGC	6 cut(s)	35, 155, 158, 499, 545, 724
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	254, 271
BmeT110I	CYCGRG	1 cut(s)	278
BmgT120I	GGNCC	2 cut(s)	254, 271
BmiI	GGNNCC	2 cut(s)	75, 574
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	3 cut(s)	90, 524, 726
BpiI	GAAGAC	2 cut(s)	159, 599
Bpu10I	CCTNAGC	1 cut(s)	231
BpuEI	CTTGAG	1 cut(s)	105
BsaHI	GRCGYC	1 cut(s)	74
BsaI	GGTCTC	1 cut(s)	484
BsaJI	CCNNGG	4 cut(s)	56, 67, 267, 683
BsaWI	WCCGGW	1 cut(s)	221
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 626
Bse1I	ACTGG	1 cut(s)	748
Bse3DI	GCAATG	1 cut(s)	481
BseBI	CCWGG	1 cut(s)	140
BseDI	CCNNGG	4 cut(s)	56, 67, 267, 683
BseGI	GGATG	3 cut(s)	63, 81, 87
BseLI	CCNNNNNNNGG	2 cut(s)	280, 626
BseMI	GCAATG	1 cut(s)	481
BseMII	CTCAG	1 cut(s)	222
BseNI	ACTGG	1 cut(s)	748
BseRI	GAGGAG	1 cut(s)	296
BseX3I	CGGCCG	1 cut(s)	53
BseXI	GCAGC	4 cut(s)	165, 168, 484, 709
BsgI	GTGCAG	1 cut(s)	257
Bsh1285I	CGRYCG	1 cut(s)	56
BshFI	GGCC	1 cut(s)	55
BshNI	GGYRCC	1 cut(s)	73
BsiEI	CGRYCG	1 cut(s)	56
BsiHKAI	GWGCWC	1 cut(s)	245
BsiHKCI	CYCGRG	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	222
BslI	CCNNNNNNNGG	2 cut(s)	280, 626
BsmAI	GTCTC	2 cut(s)	484, 527
BsnI	GGCC	1 cut(s)	55
Bso31I	GGTCTC	1 cut(s)	484
BsoBI	CYCGRG	1 cut(s)	278
Bsp1286I	GDGCHC	1 cut(s)	245
Bsp143I	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
Bsp19I	CCATGG	1 cut(s)	267
BspACI	CCGC	4 cut(s)	27, 33, 336, 544
BspANI	GGCC	1 cut(s)	55
BspCNI	CTCAG	1 cut(s)	223
BspLI	GGNNCC	2 cut(s)	75, 574
BspMAI	CTGCAG	2 cut(s)	714, 727
BspPI	GGATC	3 cut(s)	40, 567, 580
BspT107I	GGYRCC	1 cut(s)	73
BspTNI	GGTCTC	1 cut(s)	484
BsrBI	CCGCTC	1 cut(s)	546
BsrDI	GCAATG	1 cut(s)	481
BsrI	ACTGG	1 cut(s)	748
BssECI	CCNNGG	4 cut(s)	56, 67, 267, 683
BssMI	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
BssNI	GRCGYC	1 cut(s)	74
BssT1I	CCWWGG	2 cut(s)	267, 683
Bst2UI	CCWGG	1 cut(s)	140
Bst4CI	ACNGT	2 cut(s)	258, 629
Bst6I	CTCTTC	1 cut(s)	669
BstACI	GRCGYC	1 cut(s)	74
BstC8I	GCNNGC	1 cut(s)	245
BstDEI	CTNAG	1 cut(s)	231
BstDSI	CCRYGG	2 cut(s)	67, 267
BstF5I	GGATG	3 cut(s)	63, 81, 87
BstH2I	RGCGCY	1 cut(s)	77
BstHHI	GCGC	2 cut(s)	76, 432
BstKTI	GATC	6 cut(s)	48, 127, 575, 638, 692, 709
BstMAI	GTCTC	2 cut(s)	484, 527
BstMBI	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
BstMCI	CGRYCG	1 cut(s)	56
BstMWI	GCNNNNNNNGC	2 cut(s)	33, 244
BstNI	CCWGG	1 cut(s)	140
BstSCI	CCNGG	1 cut(s)	138
BstSFI	CTRYAG	4 cut(s)	14, 556, 710, 723
BstV1I	GCAGC	4 cut(s)	165, 168, 484, 709
BstV2I	GAAGAC	2 cut(s)	159, 599
BstX2I	RGATCY	1 cut(s)	572
BstYI	RGATCY	1 cut(s)	572
BstZI	CGGCCG	1 cut(s)	53
BsuRI	GGCC	1 cut(s)	55
BtgI	CCRYGG	2 cut(s)	67, 267
BtgZI	GCGATG	1 cut(s)	703
BtsCI	GGATG	3 cut(s)	63, 81, 87
BtsI	GCAGTG	1 cut(s)	719
BtsIMutI	CAGTG	1 cut(s)	719
Cac8I	GCNNGC	1 cut(s)	245
CfoI	GCGC	2 cut(s)	76, 432
Cfr13I	GGNCC	2 cut(s)	254, 271
CviAII	CATG	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	231
DinI	GGCGCC	1 cut(s)	75
DpnI	GATC	6 cut(s)	47, 126, 574, 637, 691, 708
DpnII	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
EaeI	YGGCCR	1 cut(s)	53
EagI	CGGCCG	1 cut(s)	53
Eam1104I	CTCTTC	1 cut(s)	669
EarI	CTCTTC	1 cut(s)	669
Ecl136II	GAGCTC	1 cut(s)	243
EclXI	CGGCCG	1 cut(s)	53
Eco130I	CCWWGG	2 cut(s)	267, 683
Eco24I	GRGCYC	1 cut(s)	245
Eco31I	GGTCTC	1 cut(s)	484
Eco32I	GATATC	1 cut(s)	370
Eco47I	GGWCC	2 cut(s)	254, 271
Eco52I	CGGCCG	1 cut(s)	53
Eco53kI	GAGCTC	1 cut(s)	243
Eco57I	CTGAAG	1 cut(s)	153
Eco88I	CYCGRG	1 cut(s)	278
EcoICRI	GAGCTC	1 cut(s)	243
EcoRII	CCWGG	1 cut(s)	138
EcoRV	GATATC	1 cut(s)	370
EcoT14I	CCWWGG	2 cut(s)	267, 683
EcoT38I	GRGCYC	1 cut(s)	245
EgeI	GGCGCC	1 cut(s)	75
EheI	GGCGCC	1 cut(s)	75
ErhI	CCWWGG	2 cut(s)	267, 683
FaeI	CATG	1 cut(s)	271
FaiI	YATR	7 cut(s)	44, 269, 320, 333, 420, 440, 558
FatI	CATG	1 cut(s)	267
FblI	GTMKAC	1 cut(s)	631
Fnu4HI	GCNGC	6 cut(s)	34, 154, 157, 498, 544, 723
FokI	GGATG	3 cut(s)	50, 68, 74
FriOI	GRGCYC	1 cut(s)	245
Fsp4HI	GCNGC	6 cut(s)	34, 154, 157, 498, 544, 723
FspBI	CTAG	2 cut(s)	362, 507
GlaI	GCGC	2 cut(s)	75, 431
GluI	GCNGC	6 cut(s)	34, 154, 157, 498, 544, 723
HaeII	RGCGCY	1 cut(s)	77
HaeIII	GGCC	1 cut(s)	55
HapII	CCGG	1 cut(s)	222
HhaI	GCGC	2 cut(s)	76, 432
Hin1I	GRCGYC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	271
Hin6I	GCGC	2 cut(s)	74, 430
HinP1I	GCGC	2 cut(s)	74, 430
HinfI	GANTC	4 cut(s)	95, 146, 188, 218
HpaII	CCGG	1 cut(s)	222
HphI	GGTGA	5 cut(s)	236, 579, 585, 630, 648
Hpy166II	GTNNAC	1 cut(s)	632
Hpy188I	TCNGA	5 cut(s)	50, 103, 196, 208, 706
Hpy188III	TCNNGA	3 cut(s)	122, 134, 461
Hpy8I	GTNNAC	1 cut(s)	632
Hpy99I	CGWCG	6 cut(s)	54, 103, 132, 166, 208, 675
HpyAV	CCTTC	3 cut(s)	171, 361, 606
HpyCH4III	ACNGT	2 cut(s)	258, 629
HpyCH4IV	ACGT	1 cut(s)	738
HpyCH4V	TGCA	8 cut(s)	81, 153, 238, 401, 474, 712, 717, 725
HpyF10VI	GCNNNNNNNGC	2 cut(s)	33, 244
HpyF3I	CTNAG	1 cut(s)	231
HpySE526I	ACGT	1 cut(s)	738
Hsp92I	GRCGYC	1 cut(s)	74
Hsp92II	CATG	1 cut(s)	271
HspAI	GCGC	2 cut(s)	74, 430
KasI	GGCGCC	1 cut(s)	73
Kzo9I	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
LmnI	GCTCC	1 cut(s)	551
Lsp1109I	GCAGC	4 cut(s)	165, 168, 484, 709
LweI	GCATC	3 cut(s)	90, 524, 726
MaeI	CTAG	2 cut(s)	362, 507
MaeII	ACGT	1 cut(s)	738
MaeIII	GTNAC	1 cut(s)	739
MalI	GATC	6 cut(s)	47, 126, 574, 637, 691, 708
MbiI	CCGCTC	1 cut(s)	546
MboI	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
MboII	GAAGA	5 cut(s)	159, 375, 591, 599, 656
MflI	RGATCY	1 cut(s)	572
MhlI	GDGCHC	1 cut(s)	245
MluCI	AATT	2 cut(s)	451, 582
Mly113I	GGCGCC	1 cut(s)	74
MlyI	GAGTC	3 cut(s)	89, 140, 182
MmeI	TCCRAC	6 cut(s)	73, 81, 154, 186, 240, 600
MseI	TTAA	1 cut(s)	249
MspA1I	CMGCKG	1 cut(s)	497
MspI	CCGG	1 cut(s)	222
MspR9I	CCNGG	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	33, 244
NarI	GGCGCC	1 cut(s)	74
NcoI	CCATGG	1 cut(s)	267
NdeII	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
NlaIII	CATG	1 cut(s)	271
NlaIV	GGNNCC	2 cut(s)	75, 574
NmeAIII	GCCGAG	1 cut(s)	81
PaeR7I	CTCGAG	1 cut(s)	278
PcsI	WCGNNNNNNNCGW	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	218
PkrI	GCNGC	6 cut(s)	35, 155, 158, 499, 545, 724
PleI	GAGTC	3 cut(s)	89, 140, 182
PluTI	GGCGCC	1 cut(s)	77
PpsI	GAGTC	3 cut(s)	89, 140, 182
Psp124BI	GAGCTC	1 cut(s)	245
Psp6I	CCWGG	1 cut(s)	138
PspGI	CCWGG	1 cut(s)	138
PspN4I	GGNNCC	2 cut(s)	75, 574
PspPI	GGNCC	2 cut(s)	254, 271
PspXI	VCTCGAGB	1 cut(s)	278
PstI	CTGCAG	2 cut(s)	714, 727
PsuI	RGATCY	1 cut(s)	572
PvuII	CAGCTG	1 cut(s)	497
SacI	GAGCTC	1 cut(s)	245
SaqAI	TTAA	1 cut(s)	249
SatI	GCNGC	6 cut(s)	34, 154, 157, 498, 544, 723
Sau3AI	GATC	6 cut(s)	45, 124, 572, 635, 689, 706
Sau96I	GGNCC	2 cut(s)	254, 271
SchI	GAGTC	3 cut(s)	89, 140, 182
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	1 cut(s)	245
SfaNI	GCATC	3 cut(s)	90, 524, 726
SfcI	CTRYAG	4 cut(s)	14, 556, 710, 723
SfoI	GGCGCC	1 cut(s)	75
Sfr274I	CTCGAG	1 cut(s)	278
SinI	GGWCC	2 cut(s)	254, 271
SlaI	CTCGAG	1 cut(s)	278
SmlI	CTYRAG	2 cut(s)	120, 278
SmoI	CTYRAG	2 cut(s)	120, 278
Sse9I	AATT	2 cut(s)	451, 582
SsiI	CCGC	4 cut(s)	27, 33, 336, 544
SspDI	GGCGCC	1 cut(s)	73
SspMI	CTAG	2 cut(s)	362, 507
SstI	GAGCTC	1 cut(s)	245
StyD4I	CCNGG	1 cut(s)	138
StyI	CCWWGG	2 cut(s)	267, 683
TaaI	ACNGT	2 cut(s)	258, 629
TaiI	ACGT	1 cut(s)	741
TaqI	TCGA	3 cut(s)	279, 511, 670
TasI	AATT	2 cut(s)	451, 582
TauI	GCSGC	2 cut(s)	36, 546
TfiI	GAWTC	1 cut(s)	218
Tru1I	TTAA	1 cut(s)	249
Tru9I	TTAA	1 cut(s)	249
TscAI	CASTG	1 cut(s)	719
TseI	GCWGC	4 cut(s)	153, 156, 497, 722
TspDTI	ATGAA	1 cut(s)	52
TspGWI	ACGGA	1 cut(s)	688
TspRI	CASTG	1 cut(s)	719
VpaK11BI	GGWCC	2 cut(s)	254, 271
XhoI	CTCGAG	1 cut(s)	278
XmiI	GTMKAC	1 cut(s)	631
XspI	CTAG	2 cut(s)	362, 507

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.