Rh6BG519300

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000728
Physical Location & Seq
Reverse (-)
71325466 .. 71326609
1144 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG519300.1

Sequence Viewer

Length: 714 bp
ATGTCGATCGCATTGGATAGGATCGGTGACGTCGCGCCCTCGTCTGGCTTCATGCACGGTGGGGCCATGTCGTTTGGCTTGATATTCGAGTCGTCGCCGGGAGAGGATAGAGCTCCGGCCATTGCGTCTTCCTCGTCGTCTTCGATCGGGAAGAACAGCGACGTGTTGTCGGACGAAGGCGACGAGGAAAATGACGAGGCTCAGAGCTCGTATAATGGTCCTTTGGATATGATGGAGGCTTTGGAGGAGGTTTTGCCTATCAGGAGAGGCATCTCGAAGTTCTATAACTACAAATCCAAGTCCTTCACGAGTCTGGCAGATGTTTCAACTTCTTCCTCCATTAAAGAGATTGCGAAGCCAGATAATGCCTATACCAGGAAACGCAGGAACCTGCTCGCTTCGAATCTCATCTGGGACAAGAATCGGAATTCCCCACTGAGTTGTAGGGGTGGGATATCAAAGTCCTCAAAGAGAACAATCACCGCAAGTCAAAGCACGTTGGCTTTGGCTGTGGAAATGTGCAGCTCGGAAACCAGTCCCAGTACAAGTGGTGATTCCAATTCAAGTTCCCTTACTCGTCCATCCTTCAATAAACTCGGAAATCACGTTGCTTGGCGATCATTATCCTTGGCTGATTTGCAAGAATGTGCCACTTCTGCAGCTGTAAATACCACCTCTCGCTTCTTTCCTTCAAAACCAAATTTGCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

237

Amino Acids

25.34

Weight (kDa)

6.17

Isoelectric Point (pI)

66.68

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 33
Acc36I ACCTGC 1 cut(s) 399
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 483
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 1 cut(s) 117
AcsI RAATTY 2 cut(s) 427, 700
AcyI GRCGYC 1 cut(s) 30
AfaI GTAC 1 cut(s) 544
AfiI CCNNNNNNNGG 2 cut(s) 44, 375
AflIII ACRYGT 1 cut(s) 162
AgsI TTSAA 4 cut(s) 327, 564, 589, 693
AhdI GACNNNNNGTC 1 cut(s) 166
AjiI CACGTC 1 cut(s) 163
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 4 cut(s) 113, 207, 525, 662
AluI AGCT 4 cut(s) 113, 207, 525, 662
Alw21I GWGCWC 2 cut(s) 115, 209
AlwI GGATC 1 cut(s) 29
AoxI GGCC 2 cut(s) 63, 117
ApeKI GCWGC 3 cut(s) 522, 659, 706
ApoI RAATTY 2 cut(s) 427, 700
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 63, 218
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 38, 472, 563
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 218
BanII GRGCYC 2 cut(s) 115, 209
BauI CACGAG 1 cut(s) 307
BbsI GAAGAC 2 cut(s) 120, 132
Bbv12I GWGCWC 2 cut(s) 115, 209
BbvI GCAGC 2 cut(s) 534, 671
BccI CCATC 2 cut(s) 226, 589
BciT130I CCWGG 1 cut(s) 376
BcnI CCSGG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 657
BfuAI ACCTGC 1 cut(s) 399
BisI GCNGC 3 cut(s) 523, 660, 707
BlsI GCNGC 3 cut(s) 524, 661, 708
Bme1390I CCNGG 2 cut(s) 99, 376
Bme18I GGWCC 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgBI CACGTC 1 cut(s) 163
BmgT120I GGNCC 2 cut(s) 63, 218
BmiI GGNNCC 2 cut(s) 64, 389
BmrFI CCNGG 2 cut(s) 99, 376
BmrI ACTGGG 1 cut(s) 534
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 534
BpiI GAAGAC 2 cut(s) 120, 132
Bpu14I TTCGAA 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 622
BsaHI GRCGYC 1 cut(s) 30
BsaJI CCNNGG 1 cut(s) 627
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 375
Bse1I ACTGG 2 cut(s) 534, 540
Bse3DI GCAATG 1 cut(s) 120
Bse8I GATNNNNATC 1 cut(s) 622
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 1 cut(s) 627
BseGI GGATG 1 cut(s) 581
BseJI GATNNNNATC 1 cut(s) 622
BseLI CCNNNNNNNGG 2 cut(s) 44, 375
BseMI GCAATG 1 cut(s) 120
BseMII CTCAG 2 cut(s) 215, 428
BseNI ACTGG 2 cut(s) 534, 540
BseRI GAGGAG 1 cut(s) 260
BseXI GCAGC 2 cut(s) 534, 671
BsgI GTGCAG 1 cut(s) 541
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 2 cut(s) 9, 147
BshFI GGCC 2 cut(s) 65, 119
BsiEI CGRYCG 2 cut(s) 9, 147
BsiHKAI GWGCWC 2 cut(s) 115, 209
BsiSI CCGG 2 cut(s) 98, 116
BslFI GGGAC 2 cut(s) 428, 522
BslI CCNNNNNNNGG 2 cut(s) 44, 375
BsmFI GGGAC 2 cut(s) 428, 522
BsnI GGCC 2 cut(s) 65, 119
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 115, 209
Bsp143I GATC 4 cut(s) 6, 21, 144, 617
BspACI CCGC 1 cut(s) 483
BspANI GGCC 2 cut(s) 65, 119
BspCNI CTCAG 2 cut(s) 214, 429
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 64, 389
BspMAI CTGCAG 1 cut(s) 661
BspMI ACCTGC 1 cut(s) 399
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 120
BsrI ACTGG 2 cut(s) 534, 540
BssECI CCNNGG 1 cut(s) 627
BssMI GATC 4 cut(s) 6, 21, 144, 617
BssNI GRCGYC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 307
BssT1I CCWWGG 1 cut(s) 627
Bst2BI CACGAG 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 30
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 201, 437
BstENI CCTNNNNNAGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 581
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 4 cut(s) 9, 24, 147, 620
BstMBI GATC 4 cut(s) 6, 21, 144, 617
BstMCI CGRYCG 2 cut(s) 9, 147
BstMWI GCNNNNNNNGC 1 cut(s) 656
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 97, 374
BstSFI CTRYAG 1 cut(s) 657
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 534, 671
BstV2I GAAGAC 2 cut(s) 120, 132
BsuRI GGCC 2 cut(s) 65, 119
BtrI CACGTC 1 cut(s) 163
BtsCI GGATG 1 cut(s) 581
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 63, 218
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 543
CviAII CATG 2 cut(s) 52, 67
CviQI GTAC 1 cut(s) 543
DdeI CTNAG 2 cut(s) 201, 437
DpnI GATC 4 cut(s) 8, 23, 146, 619
DpnII GATC 4 cut(s) 6, 21, 144, 617
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 166
Ecl136II GAGCTC 2 cut(s) 113, 207
Eco130I CCWWGG 1 cut(s) 627
Eco24I GRGCYC 2 cut(s) 115, 209
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 218
Eco53kI GAGCTC 2 cut(s) 113, 207
EcoICRI GAGCTC 2 cut(s) 113, 207
EcoNI CCTNNNNNAGG 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 374
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 1 cut(s) 627
EcoT38I GRGCYC 2 cut(s) 115, 209
ErhI CCWWGG 1 cut(s) 627
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 6 cut(s) 53, 68, 213, 230, 285, 372
FaqI GGGAC 2 cut(s) 428, 522
FatI CATG 2 cut(s) 51, 66
Fnu4HI GCNGC 3 cut(s) 523, 660, 707
FokI GGATG 1 cut(s) 568
FriOI GRGCYC 2 cut(s) 115, 209
Fsp4HI GCNGC 3 cut(s) 523, 660, 707
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 523, 660, 707
HaeIII GGCC 2 cut(s) 65, 119
HapII CCGG 2 cut(s) 98, 116
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 30
Hin1II CATG 2 cut(s) 55, 70
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HinfI GANTC 5 cut(s) 89, 310, 403, 421, 554
HpaII CCGG 2 cut(s) 98, 116
HphI GGTGA 3 cut(s) 38, 472, 563
Hpy188I TCNGA 5 cut(s) 172, 204, 426, 529, 599
Hpy188III TCNNGA 4 cut(s) 148, 262, 274, 307
Hpy99I CGWCG 5 cut(s) 35, 97, 139, 164, 185
HpyAV CCTTC 4 cut(s) 170, 313, 595, 699
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 4 cut(s) 30, 162, 497, 606
HpyCH4V TGCA 5 cut(s) 55, 522, 640, 659, 706
HpyF10VI GCNNNNNNNGC 1 cut(s) 656
HpyF3I CTNAG 2 cut(s) 201, 437
HpySE526I ACGT 4 cut(s) 30, 162, 497, 606
Hsp92I GRCGYC 1 cut(s) 30
Hsp92II CATG 2 cut(s) 55, 70
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 4 cut(s) 6, 21, 144, 617
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 534, 671
LweI GCATC 1 cut(s) 279
MaeII ACGT 4 cut(s) 30, 162, 497, 606
MaeIII GTNAC 1 cut(s) 26
MalI GATC 4 cut(s) 8, 23, 146, 619
MboI GATC 4 cut(s) 6, 21, 144, 617
MboII GAAGA 4 cut(s) 120, 132, 163, 324
MhlI GDGCHC 2 cut(s) 115, 209
MluCI AATT 3 cut(s) 427, 559, 700
MlyI GAGTC 2 cut(s) 98, 319
MmeI TCCRAC 1 cut(s) 150
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 662
MspI CCGG 2 cut(s) 98, 116
MspR9I CCNGG 2 cut(s) 99, 376
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 656
NciI CCSGG 1 cut(s) 99
NdeII GATC 4 cut(s) 6, 21, 144, 617
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 2 cut(s) 64, 389
NmuCI GTSAC 1 cut(s) 26
NspV TTCGAA 1 cut(s) 401
PcsI WCGNNNNNNNCGW 3 cut(s) 140, 180, 603
PfeI GAWTC 3 cut(s) 403, 421, 554
PkrI GCNGC 3 cut(s) 524, 661, 708
Ple19I CGATCG 2 cut(s) 9, 147
PleI GAGTC 2 cut(s) 97, 318
PpsI GAGTC 2 cut(s) 97, 318
Psp124BI GAGCTC 2 cut(s) 115, 209
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 64, 389
PspPI GGNCC 2 cut(s) 63, 218
PstI CTGCAG 1 cut(s) 661
PvuI CGATCG 2 cut(s) 9, 147
PvuII CAGCTG 1 cut(s) 662
RsaI GTAC 1 cut(s) 544
RsaNI GTAC 1 cut(s) 543
SacI GAGCTC 2 cut(s) 115, 209
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 523, 660, 707
Sau3AI GATC 4 cut(s) 6, 21, 144, 617
Sau96I GGNCC 2 cut(s) 63, 218
SchI GAGTC 2 cut(s) 98, 319
ScrFI CCNGG 2 cut(s) 99, 376
SduI GDGCHC 2 cut(s) 115, 209
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 657
SfuI TTCGAA 1 cut(s) 401
SinI GGWCC 1 cut(s) 218
Sse9I AATT 3 cut(s) 427, 559, 700
SsiI CCGC 1 cut(s) 483
SstI GAGCTC 2 cut(s) 115, 209
StyD4I CCNGG 2 cut(s) 97, 374
StyI CCWWGG 1 cut(s) 627
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 4 cut(s) 33, 165, 500, 609
TaqI TCGA 5 cut(s) 5, 87, 143, 275, 401
TasI AATT 3 cut(s) 427, 559, 700
TatI WGTACW 1 cut(s) 542
TfiI GAWTC 3 cut(s) 403, 421, 554
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 441
TseFI GTSAC 1 cut(s) 26
TseI GCWGC 3 cut(s) 522, 659, 706
Tsp45I GTSAC 1 cut(s) 26
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 373
XapI RAATTY 2 cut(s) 427, 700
ZraI GACGTC 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.