Rh6AG508100

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0000728
Physical Location & Seq
Reverse (-)
68028142 .. 68029237
1096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG508100.1

Sequence Viewer

Length: 717 bp
ATGTCGATCGCATTGGATAGGATCGGTGATGTCGCGCCCTCGTCTGGCTTCATGCACGGTGGGGCCATGTCTTTTGGCTTGATATTCGAGTCGTCGCCGGGAGAGGATAGAGCTCCGGCCGTTGCGTCTTCCTCGTCGACGTCGATTGGGAAGAACAGCGACGGGTTGTCGGACGAAGGCGACGAGGAAAATGACGAGGCTCAGAGCTCGTATAATGGTCCTTTGGATATGATGGAGGCTTTGGAGGAGGTTTTGCCTATCAGGAGAGGCATCTCCAAGTTCTATAACTACAAATCCAAGTCCTTCACGAGTCTGGCAGATGTTTCAACTTCTTCCTCCATTAAAGAGATTGCGAAGCCAGATAATGCCTATACCAGGAAACGCAGGAACCTGCTCGCTTCGAATCTCTTCTGGGACAAGAATCGGAATTCCCCACTGAGTTGTAGGGGTGGGATATCAAAGTCCTCCTCAAAGAGAACAATCACCGCAAGTCAAAGCACCTTGGCTTTGGCCGTGGCAATGTGCAGCTCGGAAACCAGTCCCAGTACAAGTGGTGATTCCAATTCAAGCTCCCTTACTCCTCCATCCTTCAATAAACTCGGAAATCACGTTGCTTGGCGATCATTATCCTTGGCTGATTTGCAAGAATGTGCCACTTCTGCAGCTGTAAATACCACTTCTCGCTTCTTTCCTTCAAAACCAAATTTGCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

238

Amino Acids

25.3

Weight (kDa)

6.16

Isoelectric Point (pI)

65.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 399
AccI GTMKAC 1 cut(s) 137
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 486
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 2 cut(s) 117, 510
AcsI RAATTY 2 cut(s) 427, 703
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 547
AfiI CCNNNNNNNGG 2 cut(s) 44, 375
AgsI TTSAA 4 cut(s) 327, 567, 592, 696
AhdI GACNNNNNGTC 1 cut(s) 166
AjnI CCWGG 1 cut(s) 374
AluBI AGCT 5 cut(s) 113, 207, 528, 570, 665
AluI AGCT 5 cut(s) 113, 207, 528, 570, 665
Alw21I GWGCWC 2 cut(s) 115, 209
AlwI GGATC 1 cut(s) 29
AoxI GGCC 3 cut(s) 63, 117, 510
ApeKI GCWGC 3 cut(s) 525, 662, 709
ApoI RAATTY 2 cut(s) 427, 703
Asp700I GAANNNNTTC 1 cut(s) 407
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 63, 218
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 38, 475, 566
AsuII TTCGAA 1 cut(s) 401
AvaII GGWCC 1 cut(s) 218
BanII GRGCYC 2 cut(s) 115, 209
BauI CACGAG 1 cut(s) 307
BbsI GAAGAC 1 cut(s) 120
Bbv12I GWGCWC 2 cut(s) 115, 209
BbvI GCAGC 2 cut(s) 537, 674
BccI CCATC 2 cut(s) 226, 592
BceAI ACGGC 2 cut(s) 104, 497
BciT130I CCWGG 1 cut(s) 376
BcnI CCSGG 1 cut(s) 99
BfmI CTRYAG 1 cut(s) 660
BfuAI ACCTGC 1 cut(s) 399
BisI GCNGC 3 cut(s) 526, 663, 710
BlsI GCNGC 3 cut(s) 527, 664, 711
Bme1390I CCNGG 2 cut(s) 99, 376
Bme18I GGWCC 1 cut(s) 218
BmeRI GACNNNNNGTC 1 cut(s) 166
BmgT120I GGNCC 2 cut(s) 63, 218
BmiI GGNNCC 2 cut(s) 64, 389
BmrFI CCNGG 2 cut(s) 99, 376
BmrI ACTGGG 1 cut(s) 537
BmsI GCATC 1 cut(s) 279
BmuI ACTGGG 1 cut(s) 537
BpiI GAAGAC 1 cut(s) 120
Bpu14I TTCGAA 1 cut(s) 401
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 625
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 3 cut(s) 501, 513, 630
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 375
Bse1I ACTGG 2 cut(s) 537, 543
Bse3DI GCAATG 1 cut(s) 525
Bse8I GATNNNNATC 1 cut(s) 625
BseBI CCWGG 1 cut(s) 376
BseDI CCNNGG 3 cut(s) 501, 513, 630
BseGI GGATG 1 cut(s) 584
BseJI GATNNNNATC 1 cut(s) 625
BseLI CCNNNNNNNGG 2 cut(s) 44, 375
BseMI GCAATG 1 cut(s) 525
BseMII CTCAG 2 cut(s) 215, 428
BseNI ACTGG 2 cut(s) 537, 543
BseRI GAGGAG 3 cut(s) 260, 457, 570
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 537, 674
BsgI GTGCAG 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 2 cut(s) 9, 120
BshFI GGCC 3 cut(s) 65, 119, 512
BsiEI CGRYCG 2 cut(s) 9, 120
BsiHKAI GWGCWC 2 cut(s) 115, 209
BsiSI CCGG 2 cut(s) 98, 116
BslFI GGGAC 2 cut(s) 428, 525
BslI CCNNNNNNNGG 2 cut(s) 44, 375
BsmFI GGGAC 2 cut(s) 428, 525
BsnI GGCC 3 cut(s) 65, 119, 512
Bsp119I TTCGAA 1 cut(s) 401
Bsp1286I GDGCHC 2 cut(s) 115, 209
Bsp143I GATC 3 cut(s) 6, 21, 620
BspACI CCGC 1 cut(s) 486
BspANI GGCC 3 cut(s) 65, 119, 512
BspCNI CTCAG 2 cut(s) 214, 429
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 64, 389
BspMAI CTGCAG 1 cut(s) 664
BspMI ACCTGC 1 cut(s) 399
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 401
BsrDI GCAATG 1 cut(s) 525
BsrI ACTGG 2 cut(s) 537, 543
BssECI CCNNGG 3 cut(s) 501, 513, 630
BssMI GATC 3 cut(s) 6, 21, 620
BssNI GRCGYC 1 cut(s) 140
BssSI CACGAG 1 cut(s) 307
BssT1I CCWWGG 2 cut(s) 501, 630
Bst2BI CACGAG 1 cut(s) 307
Bst2UI CCWGG 1 cut(s) 376
Bst4CI ACNGT 1 cut(s) 59
Bst6I CTCTTC 1 cut(s) 413
BstACI GRCGYC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 401
BstC8I GCNNGC 1 cut(s) 396
BstDEI CTNAG 2 cut(s) 201, 437
BstDSI CCRYGG 1 cut(s) 513
BstENI CCTNNNNNAGG 1 cut(s) 373
BstF5I GGATG 1 cut(s) 584
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 9, 24, 623
BstMBI GATC 3 cut(s) 6, 21, 620
BstMCI CGRYCG 2 cut(s) 9, 120
BstMWI GCNNNNNNNGC 1 cut(s) 659
BstNI CCWGG 1 cut(s) 376
BstSCI CCNGG 2 cut(s) 97, 374
BstSFI CTRYAG 1 cut(s) 660
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 537, 674
BstV2I GAAGAC 1 cut(s) 120
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 3 cut(s) 65, 119, 512
BtgI CCRYGG 1 cut(s) 513
BtsCI GGATG 1 cut(s) 584
BtsIMutI CAGTG 1 cut(s) 434
BveI ACCTGC 1 cut(s) 399
Cac8I GCNNGC 1 cut(s) 396
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 63, 218
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 546
CviAII CATG 2 cut(s) 52, 67
CviQI GTAC 1 cut(s) 546
DdeI CTNAG 2 cut(s) 201, 437
DpnI GATC 3 cut(s) 8, 23, 622
DpnII GATC 3 cut(s) 6, 21, 620
DriI GACNNNNNGTC 1 cut(s) 166
EaeI YGGCCR 2 cut(s) 117, 510
EagI CGGCCG 1 cut(s) 117
Eam1104I CTCTTC 1 cut(s) 413
Eam1105I GACNNNNNGTC 1 cut(s) 166
EarI CTCTTC 1 cut(s) 413
Ecl136II GAGCTC 2 cut(s) 113, 207
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 2 cut(s) 501, 630
Eco24I GRGCYC 2 cut(s) 115, 209
Eco32I GATATC 1 cut(s) 456
Eco47I GGWCC 1 cut(s) 218
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 2 cut(s) 113, 207
EcoICRI GAGCTC 2 cut(s) 113, 207
EcoNI CCTNNNNNAGG 1 cut(s) 373
EcoRI GAATTC 1 cut(s) 427
EcoRII CCWGG 1 cut(s) 374
EcoRV GATATC 1 cut(s) 456
EcoT14I CCWWGG 2 cut(s) 501, 630
EcoT38I GRGCYC 2 cut(s) 115, 209
ErhI CCWWGG 2 cut(s) 501, 630
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 6 cut(s) 53, 68, 213, 230, 285, 372
FaqI GGGAC 2 cut(s) 428, 525
FatI CATG 2 cut(s) 51, 66
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 526, 663, 710
FokI GGATG 1 cut(s) 571
FriOI GRGCYC 2 cut(s) 115, 209
Fsp4HI GCNGC 3 cut(s) 526, 663, 710
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 526, 663, 710
HaeIII GGCC 3 cut(s) 65, 119, 512
HapII CCGG 2 cut(s) 98, 116
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 55, 70
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 5 cut(s) 89, 310, 403, 421, 557
HpaII CCGG 2 cut(s) 98, 116
HphI GGTGA 3 cut(s) 38, 475, 566
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 5 cut(s) 172, 204, 426, 532, 602
Hpy188III TCNNGA 2 cut(s) 262, 307
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 6 cut(s) 97, 139, 142, 145, 164, 185
HpyAV CCTTC 4 cut(s) 170, 313, 598, 702
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 2 cut(s) 140, 609
HpyCH4V TGCA 5 cut(s) 55, 525, 643, 662, 709
HpyF10VI GCNNNNNNNGC 1 cut(s) 659
HpyF3I CTNAG 2 cut(s) 201, 437
HpySE526I ACGT 2 cut(s) 140, 609
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 55, 70
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 6, 21, 620
LmnI GCTCC 2 cut(s) 118, 575
Lsp1109I GCAGC 2 cut(s) 537, 674
LweI GCATC 1 cut(s) 279
MaeII ACGT 2 cut(s) 140, 609
MalI GATC 3 cut(s) 8, 23, 622
MboI GATC 3 cut(s) 6, 21, 620
MboII GAAGA 4 cut(s) 120, 163, 324, 400
MhlI GDGCHC 2 cut(s) 115, 209
MluCI AATT 3 cut(s) 427, 562, 703
MlyI GAGTC 2 cut(s) 98, 319
MmeI TCCRAC 1 cut(s) 150
MroXI GAANNNNTTC 1 cut(s) 407
MseI TTAA 1 cut(s) 342
MspA1I CMGCKG 1 cut(s) 665
MspI CCGG 2 cut(s) 98, 116
MspR9I CCNGG 2 cut(s) 99, 376
MvaI CCWGG 1 cut(s) 376
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 659
NciI CCSGG 1 cut(s) 99
NdeII GATC 3 cut(s) 6, 21, 620
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 2 cut(s) 64, 389
NspV TTCGAA 1 cut(s) 401
PcsI WCGNNNNNNNCGW 3 cut(s) 140, 180, 606
PdmI GAANNNNTTC 1 cut(s) 407
PfeI GAWTC 3 cut(s) 403, 421, 557
PkrI GCNGC 3 cut(s) 527, 664, 711
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 97, 318
PpsI GAGTC 2 cut(s) 97, 318
Psp124BI GAGCTC 2 cut(s) 115, 209
Psp6I CCWGG 1 cut(s) 374
PspGI CCWGG 1 cut(s) 374
PspN4I GGNNCC 2 cut(s) 64, 389
PspPI GGNCC 2 cut(s) 63, 218
PstI CTGCAG 1 cut(s) 664
PvuI CGATCG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 665
RsaI GTAC 1 cut(s) 547
RsaNI GTAC 1 cut(s) 546
SacI GAGCTC 2 cut(s) 115, 209
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 342
SatI GCNGC 3 cut(s) 526, 663, 710
Sau3AI GATC 3 cut(s) 6, 21, 620
Sau96I GGNCC 2 cut(s) 63, 218
SchI GAGTC 2 cut(s) 98, 319
ScrFI CCNGG 2 cut(s) 99, 376
SduI GDGCHC 2 cut(s) 115, 209
SfaNI GCATC 1 cut(s) 279
SfcI CTRYAG 1 cut(s) 660
SfuI TTCGAA 1 cut(s) 401
SgrDI CGTCGACG 1 cut(s) 136
SinI GGWCC 1 cut(s) 218
Sse9I AATT 3 cut(s) 427, 562, 703
SsiI CCGC 1 cut(s) 486
SstI GAGCTC 2 cut(s) 115, 209
StyD4I CCNGG 2 cut(s) 97, 374
StyI CCWWGG 2 cut(s) 501, 630
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 2 cut(s) 143, 612
TaqI TCGA 5 cut(s) 5, 87, 137, 143, 401
TasI AATT 3 cut(s) 427, 562, 703
TatI WGTACW 1 cut(s) 545
TfiI GAWTC 3 cut(s) 403, 421, 557
Tru1I TTAA 1 cut(s) 342
Tru9I TTAA 1 cut(s) 342
TscAI CASTG 1 cut(s) 441
TseI GCWGC 3 cut(s) 525, 662, 709
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 441
VpaK11BI GGWCC 1 cut(s) 218
XagI CCTNNNNNAGG 1 cut(s) 373
XapI RAATTY 2 cut(s) 427, 703
XmiI GTMKAC 1 cut(s) 137
XmnI GAANNNNTTC 1 cut(s) 407
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.