RchiOBHm_Chr3g0491201

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
3
OG0000728
Physical Location & Seq
Forward (+)
37972441 .. 37976018
3578 bp
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UTR
Exon/CDS
Intron
PRQ45421

Sequence Viewer

Length: 381 bp
ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACAGTCTAGGAGGTTCATCCATGGGATGCCTTGTATTTTGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTACCTCGAGGTCCTTGTCGGTTGGTAATAACAGTGACAAGTCTAATGGGTCGTCGGAGGGTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCATGGACCAGCTTGAGGAGGTTTTGCCTGTCAAAGCTTACATTGTCACTTGGCTGAGAAGAATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATCAGAAACATGATACTACAGGCTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

126

Amino Acids

14.31

Weight (kDa)

6.05

Isoelectric Point (pI)

61.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 154
AclWI GGATC 2 cut(s) 40, 126
AfaI GTAC 1 cut(s) 151
AfiI CCNNNNNNNGG 1 cut(s) 259
AluBI AGCT 3 cut(s) 222, 256, 281
AluI AGCT 3 cut(s) 222, 256, 281
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 2 cut(s) 40, 126
AlwNI CAGNNNCTG 1 cut(s) 376
Ama87I CYCGRG 1 cut(s) 154
AoxI GGCC 1 cut(s) 233
AspS9I GGNCC 3 cut(s) 159, 233, 250
AsuHPI GGTGA 2 cut(s) 221, 323
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 2 cut(s) 159, 250
BaeI ACNNNNGTAYC 2 cut(s) 133, 166
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 224
BccI CCATC 1 cut(s) 359
BclI TGATCA 1 cut(s) 112
BfaI CTAG 2 cut(s) 57, 147
BfmI CTRYAG 2 cut(s) 368, 377
Bme18I GGWCC 2 cut(s) 159, 250
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 159, 233, 250
BmsI GCATC 1 cut(s) 66
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuEI CTTGAG 1 cut(s) 278
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 70, 246
Bsc4I CCNNNNNNNGG 1 cut(s) 259
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 70, 246
BseGI GGATG 2 cut(s) 66, 81
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 259
BseMII CTCAG 1 cut(s) 290
BseRI GAGGAG 2 cut(s) 152, 275
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 154
BslI CCNNNNNNNGG 1 cut(s) 259
BsnI GGCC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 4 cut(s) 45, 90, 112, 118
Bsp19I CCATGG 2 cut(s) 70, 246
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 291
BspPI GGATC 2 cut(s) 40, 126
BssECI CCNNGG 2 cut(s) 70, 246
BssMI GATC 4 cut(s) 45, 90, 112, 118
BssT1I CCWWGG 2 cut(s) 70, 246
Bst4CI ACNGT 2 cut(s) 54, 182
BstDEI CTNAG 1 cut(s) 299
BstDSI CCRYGG 2 cut(s) 70, 246
BstF5I GGATG 2 cut(s) 66, 81
BstKTI GATC 4 cut(s) 48, 93, 115, 121
BstMBI GATC 4 cut(s) 45, 90, 112, 118
BstSFI CTRYAG 2 cut(s) 368, 377
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 2 cut(s) 70, 246
BtsCI GGATG 2 cut(s) 66, 81
BtsIMutI CAGTG 1 cut(s) 187
CaiI CAGNNNCTG 1 cut(s) 376
Cfr13I GGNCC 3 cut(s) 159, 233, 250
Csp6I GTAC 1 cut(s) 150
CviAII CATG 3 cut(s) 71, 247, 361
CviJI RGCY 6 cut(s) 222, 235, 256, 281, 298, 374
CviKI_1 RGCY 6 cut(s) 222, 235, 256, 281, 298, 374
CviQI GTAC 1 cut(s) 150
DdeI CTNAG 1 cut(s) 299
DpnI GATC 4 cut(s) 47, 92, 114, 120
DpnII GATC 4 cut(s) 45, 90, 112, 118
DraI TTTAAA 1 cut(s) 229
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 70, 246
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 2 cut(s) 159, 250
Eco53kI GAGCTC 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 222
EcoO109I RGGNCCY 2 cut(s) 159, 233
EcoT14I CCWWGG 2 cut(s) 70, 246
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 2 cut(s) 70, 246
FaeI CATG 3 cut(s) 74, 250, 364
FaiI YATR 4 cut(s) 44, 72, 248, 362
FatI CATG 3 cut(s) 70, 246, 360
FbaI TGATCA 1 cut(s) 112
FokI GGATG 2 cut(s) 53, 88
FriOI GRGCYC 1 cut(s) 224
FspBI CTAG 2 cut(s) 57, 147
HaeIII GGCC 1 cut(s) 235
Hin1II CATG 3 cut(s) 74, 250, 364
HindIII AAGCTT 1 cut(s) 279
HinfI GANTC 1 cut(s) 143
HphI GGTGA 2 cut(s) 221, 323
Hpy188I TCNGA 3 cut(s) 205, 219, 356
Hpy188III TCNNGA 1 cut(s) 116
Hpy99I CGWCG 2 cut(s) 126, 205
HpyCH4III ACNGT 2 cut(s) 54, 182
HpyF3I CTNAG 1 cut(s) 299
Hsp92II CATG 3 cut(s) 74, 250, 364
Ksp22I TGATCA 1 cut(s) 112
Kzo9I GATC 4 cut(s) 45, 90, 112, 118
LpnPI CCDG 5 cut(s) 101, 266, 285, 350, 356
LweI GCATC 1 cut(s) 66
MaeI CTAG 2 cut(s) 57, 147
MaeIII GTNAC 2 cut(s) 182, 289
MalI GATC 4 cut(s) 47, 92, 114, 120
MboI GATC 4 cut(s) 45, 90, 112, 118
MboII GAAGA 2 cut(s) 310, 315
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 323
MlyI GAGTC 1 cut(s) 137
MmeI TCCRAC 2 cut(s) 114, 183
MnlI CCTC 9 cut(s) 54, 130, 133, 150, 163, 199, 205, 253, 256
MseI TTAA 1 cut(s) 228
NcoI CCATGG 2 cut(s) 70, 246
NdeII GATC 4 cut(s) 45, 90, 112, 118
NlaIII CATG 3 cut(s) 74, 250, 364
NmuCI GTSAC 2 cut(s) 182, 289
PaeR7I CTCGAG 1 cut(s) 154
PleI GAGTC 1 cut(s) 137
PpsI GAGTC 1 cut(s) 137
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 159
PspPI GGNCC 3 cut(s) 159, 233, 250
PspPPI RGGWCCY 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 154
PstNI CAGNNNCTG 1 cut(s) 376
RsaI GTAC 1 cut(s) 151
RsaNI GTAC 1 cut(s) 150
SacI GAGCTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 4 cut(s) 45, 90, 112, 118
Sau96I GGNCC 3 cut(s) 159, 233, 250
SchI GAGTC 1 cut(s) 137
SduI GDGCHC 1 cut(s) 224
SetI ASST 9 cut(s) 65, 155, 161, 216, 224, 258, 267, 283, 339
SfaNI GCATC 1 cut(s) 66
SfcI CTRYAG 2 cut(s) 368, 377
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 2 cut(s) 159, 250
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 154, 257
SmoI CTYRAG 2 cut(s) 154, 257
Sse9I AATT 1 cut(s) 323
SspMI CTAG 2 cut(s) 57, 147
SstI GAGCTC 1 cut(s) 224
StyI CCWWGG 2 cut(s) 70, 246
TaaI ACNGT 2 cut(s) 54, 182
TaqI TCGA 1 cut(s) 155
TasI AATT 1 cut(s) 323
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 2 cut(s) 182, 289
Tsp45I GTSAC 2 cut(s) 182, 289
TspDTI ATGAA 2 cut(s) 55, 317
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 159, 250
XhoI CTCGAG 1 cut(s) 154
XspI CTAG 2 cut(s) 57, 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.