Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

24909338 .. 24911154

Gene Structure 1817 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG241800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACAGTCTGGGAGGTTCATCCATGGGATGCCTTGTATTTCGATCTACGACACAAAAGGGTTTGATCAGGATTGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGACGTCCTCGTCGGTTGGTAATAACAGTGACAAGTCTAATGGGTCGTCGGAGGGTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCATGGACCAGCTTGAGGAGGTTTTGCCTGTCAAAGCTTACGTTGTCACTTGGCTGAGAAGGATGTTTCCTATCTTCCAATTTCATCACCACCTGTTCTCTCTATCCATTAGAAACATGATACTACAGGCTCTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

126

Amino Acids

14.02

Weight (kDa)

5.21

Isoelectric Point (pI)

51.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	163
AatII	GACGTC	1 cut(s)	161
AccB7I	CCANNNNNTGG	1 cut(s)	56
AclWI	GGATC	1 cut(s)	40
AcyI	GRCGYC	1 cut(s)	158
AfiI	CCNNNNNNNGG	2 cut(s)	56, 259
AluBI	AGCT	4 cut(s)	153, 222, 256, 281
AluI	AGCT	4 cut(s)	153, 222, 256, 281
Alw21I	GWGCWC	1 cut(s)	224
AlwI	GGATC	1 cut(s)	40
AlwNI	CAGNNNCTG	1 cut(s)	376
AoxI	GGCC	1 cut(s)	233
AspS9I	GGNCC	2 cut(s)	233, 250
AsuHPI	GGTGA	2 cut(s)	221, 323
AvaII	GGWCC	1 cut(s)	250
BanII	GRGCYC	1 cut(s)	224
Bbv12I	GWGCWC	1 cut(s)	224
BclI	TGATCA	1 cut(s)	112
BfaI	CTAG	1 cut(s)	147
BfmI	CTRYAG	2 cut(s)	368, 377
Bme18I	GGWCC	1 cut(s)	250
BmgT120I	GGNCC	2 cut(s)	233, 250
BmsI	GCATC	1 cut(s)	66
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
BpuEI	CTTGAG	1 cut(s)	278
BsaHI	GRCGYC	1 cut(s)	158
BsaJI	CCNNGG	2 cut(s)	70, 246
Bsc4I	CCNNNNNNNGG	2 cut(s)	56, 259
BseDI	CCNNGG	2 cut(s)	70, 246
BseGI	GGATG	3 cut(s)	66, 81, 312
BseLI	CCNNNNNNNGG	2 cut(s)	56, 259
BseMII	CTCAG	1 cut(s)	290
BseRI	GAGGAG	2 cut(s)	152, 275
BshFI	GGCC	1 cut(s)	235
BsiHKAI	GWGCWC	1 cut(s)	224
BslI	CCNNNNNNNGG	2 cut(s)	56, 259
BsnI	GGCC	1 cut(s)	235
Bsp1286I	GDGCHC	1 cut(s)	224
Bsp143I	GATC	3 cut(s)	45, 90, 112
Bsp19I	CCATGG	2 cut(s)	70, 246
BspANI	GGCC	1 cut(s)	235
BspCNI	CTCAG	1 cut(s)	291
BspPI	GGATC	1 cut(s)	40
BssECI	CCNNGG	2 cut(s)	70, 246
BssMI	GATC	3 cut(s)	45, 90, 112
BssNI	GRCGYC	1 cut(s)	158
BssT1I	CCWWGG	2 cut(s)	70, 246
Bst4CI	ACNGT	2 cut(s)	54, 182
BstACI	GRCGYC	1 cut(s)	158
BstDEI	CTNAG	1 cut(s)	299
BstDSI	CCRYGG	2 cut(s)	70, 246
BstF5I	GGATG	3 cut(s)	66, 81, 312
BstKTI	GATC	3 cut(s)	48, 93, 115
BstMBI	GATC	3 cut(s)	45, 90, 112
BstSFI	CTRYAG	2 cut(s)	368, 377
BsuRI	GGCC	1 cut(s)	235
BtgI	CCRYGG	2 cut(s)	70, 246
BtsCI	GGATG	3 cut(s)	66, 81, 312
BtsIMutI	CAGTG	1 cut(s)	187
CaiI	CAGNNNCTG	1 cut(s)	376
Cfr13I	GGNCC	2 cut(s)	233, 250
CviAII	CATG	3 cut(s)	71, 247, 361
CviJI	RGCY	7 cut(s)	153, 222, 235, 256, 281, 298, 374
CviKI_1	RGCY	7 cut(s)	153, 222, 235, 256, 281, 298, 374
DdeI	CTNAG	1 cut(s)	299
DpnI	GATC	3 cut(s)	47, 92, 114
DpnII	GATC	3 cut(s)	45, 90, 112
DraI	TTTAAA	1 cut(s)	229
DrdI	GACNNNNNNGTC	1 cut(s)	163
DseDI	GACNNNNNNGTC	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	222
Eco130I	CCWWGG	2 cut(s)	70, 246
Eco24I	GRGCYC	1 cut(s)	224
Eco47I	GGWCC	1 cut(s)	250
Eco53kI	GAGCTC	1 cut(s)	222
EcoICRI	GAGCTC	1 cut(s)	222
EcoO109I	RGGNCCY	1 cut(s)	233
EcoT14I	CCWWGG	2 cut(s)	70, 246
EcoT38I	GRGCYC	1 cut(s)	224
ErhI	CCWWGG	2 cut(s)	70, 246
FaeI	CATG	3 cut(s)	74, 250, 364
FaiI	YATR	4 cut(s)	44, 72, 248, 362
FatI	CATG	3 cut(s)	70, 246, 360
FbaI	TGATCA	1 cut(s)	112
FokI	GGATG	3 cut(s)	53, 88, 319
FriOI	GRGCYC	1 cut(s)	224
FspBI	CTAG	1 cut(s)	147
HaeIII	GGCC	1 cut(s)	235
Hin1I	GRCGYC	1 cut(s)	158
Hin1II	CATG	3 cut(s)	74, 250, 364
HindIII	AAGCTT	1 cut(s)	279
HinfI	GANTC	1 cut(s)	143
HphI	GGTGA	2 cut(s)	221, 323
Hpy188I	TCNGA	2 cut(s)	205, 219
Hpy188III	TCNNGA	1 cut(s)	116
Hpy99I	CGWCG	3 cut(s)	160, 169, 205
HpyAV	CCTTC	1 cut(s)	297
HpyCH4III	ACNGT	2 cut(s)	54, 182
HpyCH4IV	ACGT	2 cut(s)	158, 285
HpyF3I	CTNAG	1 cut(s)	299
HpySE526I	ACGT	2 cut(s)	158, 285
Hsp92I	GRCGYC	1 cut(s)	158
Hsp92II	CATG	3 cut(s)	74, 250, 364
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	3 cut(s)	45, 90, 112
LpnPI	CCDG	6 cut(s)	42, 101, 266, 285, 350, 356
LweI	GCATC	1 cut(s)	66
MaeI	CTAG	1 cut(s)	147
MaeII	ACGT	2 cut(s)	158, 285
MaeIII	GTNAC	2 cut(s)	182, 289
MalI	GATC	3 cut(s)	47, 92, 114
MboI	GATC	3 cut(s)	45, 90, 112
MboII	GAAGA	1 cut(s)	310
MhlI	GDGCHC	1 cut(s)	224
MluCI	AATT	1 cut(s)	323
MlyI	GAGTC	1 cut(s)	137
MmeI	TCCRAC	2 cut(s)	114, 183
MnlI	CCTC	8 cut(s)	54, 130, 133, 172, 199, 205, 253, 256
MseI	TTAA	1 cut(s)	228
NcoI	CCATGG	2 cut(s)	70, 246
NdeII	GATC	3 cut(s)	45, 90, 112
NlaIII	CATG	3 cut(s)	74, 250, 364
NmuCI	GTSAC	2 cut(s)	182, 289
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PflMI	CCANNNNNTGG	1 cut(s)	56
PleI	GAGTC	1 cut(s)	137
PpsI	GAGTC	1 cut(s)	137
Psp124BI	GAGCTC	1 cut(s)	224
PspPI	GGNCC	2 cut(s)	233, 250
PstNI	CAGNNNCTG	1 cut(s)	376
SacI	GAGCTC	1 cut(s)	224
SaqAI	TTAA	1 cut(s)	228
Sau3AI	GATC	3 cut(s)	45, 90, 112
Sau96I	GGNCC	2 cut(s)	233, 250
SchI	GAGTC	1 cut(s)	137
SduI	GDGCHC	1 cut(s)	224
SfaNI	GCATC	1 cut(s)	66
SfcI	CTRYAG	2 cut(s)	368, 377
SinI	GGWCC	1 cut(s)	250
SmlI	CTYRAG	1 cut(s)	257
SmoI	CTYRAG	1 cut(s)	257
Sse9I	AATT	1 cut(s)	323
SspMI	CTAG	1 cut(s)	147
SstI	GAGCTC	1 cut(s)	224
StyI	CCWWGG	2 cut(s)	70, 246
TaaI	ACNGT	2 cut(s)	54, 182
TaiI	ACGT	2 cut(s)	161, 288
TaqI	TCGA	2 cut(s)	89, 155
TasI	AATT	1 cut(s)	323
Tru1I	TTAA	1 cut(s)	228
Tru9I	TTAA	1 cut(s)	228
TscAI	CASTG	1 cut(s)	187
TseFI	GTSAC	2 cut(s)	182, 289
Tsp45I	GTSAC	2 cut(s)	182, 289
TspDTI	ATGAA	2 cut(s)	55, 317
TspRI	CASTG	1 cut(s)	187
Van91I	CCANNNNNTGG	1 cut(s)	56
VpaK11BI	GGWCC	1 cut(s)	250
XspI	CTAG	1 cut(s)	147
ZraI	GACGTC	1 cut(s)	159

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.