Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Forward (+)

35522534 .. 35524022

Gene Structure 1489 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G403400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 735 bp

ATGTCGATCGCATTGGATAGTAGTAGTACCAGGATCGACATCGCGCCCTCGTCTGGGTTGGTCGCATGTGGGTTGCTCTTCGATTCGCCGGAAACTTGCCGGACAGTCCCCGCCGGCGAGGCTGCGGTTTCTTCGACGACGTCGTCGTCGATCGGGAATAACAGCGATGATGAGTCTGGGAGCGATGACGGCGAGAATGATGAGGCTCAAAGCTCGTATAAAGGTCCTTTGGATATGATGAATGCGTTGGAGGAGGTTTTACCTATGAGGAGAGGGATCTCAAAATTCTATAACTACAAATCCAAGTCCTTCACGAGTCTGGCAGAGGCTTCATCTTCTTCCAACATCAAAGACCTTGCAAAACCGGACAATGCATATACCAGAAAACGCAGGAACCTACTGGCCTCCAACAACATGTTGGAGAAGAACCGAAGCTTTCCACTGAGAAGCAATGGGGGTGGGATTTCAAAGAGACCCATCTCAACAAGTCGAAGCACATTGGCTTTGGCTGTTAAATTGAGCAGCTGCTCTGAAACCAGTACCAGTAGTACAAGTGAGGATTCGAATTCGAGCTCAACTTCGATGTCACCGCGGGCTCTTCCGCCCTATCATCCAGTGGGAAATTCCGCAGCTTGGAGGTCATATTCCTTGGCTGATTTGCAAGAATGTGCCACTTCTGCTGCAACTGTGAATGCTTCTCGTTTTTCTACTACGAAACCAAATATGCAACACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

245

Amino Acids

25.87

Weight (kDa)

6.74

Isoelectric Point (pI)

67.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	142, 145
AatII	GACGTC	1 cut(s)	143
AccII	CGCG	2 cut(s)	44, 592
AciI	CCGC	6 cut(s)	111, 125, 590, 592, 602, 627
AclWI	GGATC	2 cut(s)	41, 284
AcsI	RAATTY	3 cut(s)	284, 565, 622
AcyI	GRCGYC	1 cut(s)	140
AfaI	GTAC	3 cut(s)	28, 541, 550
AfiI	CCNNNNNNNGG	3 cut(s)	53, 54, 633
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	1 cut(s)	468
AjnI	CCWGG	1 cut(s)	29
AluBI	AGCT	5 cut(s)	213, 435, 525, 573, 632
AluI	AGCT	5 cut(s)	213, 435, 525, 573, 632
Alw21I	GWGCWC	1 cut(s)	575
Alw26I	GTCTC	1 cut(s)	466
AlwI	GGATC	2 cut(s)	41, 284
AoxI	GGCC	1 cut(s)	402
ApeKI	GCWGC	5 cut(s)	122, 522, 525, 629, 680
ApoI	RAATTY	3 cut(s)	284, 565, 622
AspLEI	GCGC	1 cut(s)	46
AspS9I	GGNCC	1 cut(s)	224
AsuHPI	GGTGA	1 cut(s)	579
AsuII	TTCGAA	1 cut(s)	563
AvaII	GGWCC	1 cut(s)	224
BanII	GRGCYC	2 cut(s)	575, 598
BauI	CACGAG	1 cut(s)	313
Bbv12I	GWGCWC	1 cut(s)	575
BbvI	GCAGC	5 cut(s)	109, 512, 534, 641, 667
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	31
BcoDI	GTCTC	1 cut(s)	466
BglI	GCCNNNNNGGC	1 cut(s)	119
BisI	GCNGC	5 cut(s)	123, 523, 526, 630, 681
BlsI	GCNGC	5 cut(s)	124, 524, 527, 631, 682
Bme1390I	CCNGG	1 cut(s)	31
Bme18I	GGWCC	1 cut(s)	224
BmgT120I	GGNCC	1 cut(s)	224
BmiI	GGNNCC	1 cut(s)	395
BmrFI	CCNGG	1 cut(s)	31
Bpu14I	TTCGAA	1 cut(s)	563
BsaBI	GATNNNNATC	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	140
BsaI	GGTCTC	1 cut(s)	466
BsaJI	CCNNGG	2 cut(s)	590, 648
BsaWI	WCCGGW	1 cut(s)	364
Bsc4I	CCNNNNNNNGG	3 cut(s)	53, 54, 633
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	4 cut(s)	405, 537, 543, 614
Bse3DI	GCAATG	1 cut(s)	457
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	2 cut(s)	590, 648
BseGI	GGATG	1 cut(s)	610
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	53, 54, 633
BseMI	GCAATG	1 cut(s)	457
BseMII	CTCAG	1 cut(s)	434
BseNI	ACTGG	4 cut(s)	405, 537, 543, 614
BseRI	GAGGAG	2 cut(s)	266, 283
BseXI	GCAGC	5 cut(s)	109, 512, 534, 641, 667
Bsh1236I	CGCG	2 cut(s)	44, 592
Bsh1285I	CGRYCG	2 cut(s)	9, 153
BshFI	GGCC	1 cut(s)	404
BsiEI	CGRYCG	2 cut(s)	9, 153
BsiHKAI	GWGCWC	1 cut(s)	575
BsiSI	CCGG	4 cut(s)	89, 100, 114, 365
BslFI	GGGAC	1 cut(s)	92
BslI	CCNNNNNNNGG	3 cut(s)	53, 54, 633
BsmAI	GTCTC	1 cut(s)	466
BsmFI	GGGAC	1 cut(s)	92
BsmI	GAATGC	2 cut(s)	247, 697
BsnI	GGCC	1 cut(s)	404
Bso31I	GGTCTC	1 cut(s)	466
Bsp119I	TTCGAA	1 cut(s)	563
Bsp1286I	GDGCHC	2 cut(s)	575, 598
Bsp143I	GATC	4 cut(s)	6, 33, 150, 276
BspACI	CCGC	6 cut(s)	111, 125, 590, 592, 602, 627
BspANI	GGCC	1 cut(s)	404
BspCNI	CTCAG	1 cut(s)	435
BspFNI	CGCG	2 cut(s)	44, 592
BspLI	GGNNCC	1 cut(s)	395
BspPI	GGATC	2 cut(s)	41, 284
BspQI	GCTCTTC	2 cut(s)	83, 603
BspT104I	TTCGAA	1 cut(s)	563
BspTNI	GGTCTC	1 cut(s)	466
BsrDI	GCAATG	1 cut(s)	457
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	4 cut(s)	405, 537, 543, 614
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	2 cut(s)	590, 648
BssMI	GATC	4 cut(s)	6, 33, 150, 276
BssNI	GRCGYC	1 cut(s)	140
BssSI	CACGAG	1 cut(s)	313
BssT1I	CCWWGG	1 cut(s)	648
Bst2BI	CACGAG	1 cut(s)	313
Bst2UI	CCWGG	1 cut(s)	31
Bst4CI	ACNGT	2 cut(s)	106, 688
Bst6I	CTCTTC	2 cut(s)	83, 603
BstACI	GRCGYC	1 cut(s)	140
BstBI	TTCGAA	1 cut(s)	563
BstC8I	GCNNGC	2 cut(s)	115, 594
BstDEI	CTNAG	1 cut(s)	443
BstDSI	CCRYGG	1 cut(s)	590
BstF5I	GGATG	1 cut(s)	610
BstFNI	CGCG	2 cut(s)	44, 592
BstHHI	GCGC	1 cut(s)	46
BstKTI	GATC	4 cut(s)	9, 36, 153, 279
BstMAI	GTCTC	1 cut(s)	466
BstMBI	GATC	4 cut(s)	6, 33, 150, 276
BstMCI	CGRYCG	2 cut(s)	9, 153
BstMWI	GCNNNNNNNGC	3 cut(s)	119, 189, 677
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	2 cut(s)	69, 418
BstSCI	CCNGG	1 cut(s)	29
BstUI	CGCG	2 cut(s)	44, 592
BstV1I	GCAGC	5 cut(s)	109, 512, 534, 641, 667
BstX2I	RGATCY	1 cut(s)	276
BstYI	RGATCY	1 cut(s)	276
BsuRI	GGCC	1 cut(s)	404
BtgI	CCRYGG	1 cut(s)	590
BtgZI	GCGATG	3 cut(s)	25, 180, 198
BtsCI	GGATG	1 cut(s)	610
BtsIMutI	CAGTG	2 cut(s)	440, 621
Cac8I	GCNNGC	2 cut(s)	115, 594
CfoI	GCGC	1 cut(s)	46
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	224
Cfr42I	CCGCGG	1 cut(s)	593
Csp6I	GTAC	3 cut(s)	27, 540, 549
CspCI	CAANNNNNGTGG	2 cut(s)	439, 474
CviAII	CATG	2 cut(s)	66, 415
CviQI	GTAC	3 cut(s)	27, 540, 549
DdeI	CTNAG	1 cut(s)	443
DpnI	GATC	4 cut(s)	8, 35, 152, 278
DpnII	GATC	4 cut(s)	6, 33, 150, 276
DrdI	GACNNNNNNGTC	2 cut(s)	142, 145
DseDI	GACNNNNNNGTC	2 cut(s)	142, 145
Eam1104I	CTCTTC	2 cut(s)	83, 603
EarI	CTCTTC	2 cut(s)	83, 603
EciI	GGCGGA	1 cut(s)	591
Ecl136II	GAGCTC	1 cut(s)	573
Eco130I	CCWWGG	1 cut(s)	648
Eco24I	GRGCYC	2 cut(s)	575, 598
Eco31I	GGTCTC	1 cut(s)	466
Eco47I	GGWCC	1 cut(s)	224
Eco53kI	GAGCTC	1 cut(s)	573
EcoICRI	GAGCTC	1 cut(s)	573
EcoO109I	RGGNCCY	1 cut(s)	224
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	1 cut(s)	29
EcoT14I	CCWWGG	1 cut(s)	648
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	2 cut(s)	575, 598
ErhI	CCWWGG	1 cut(s)	648
FaeI	CATG	2 cut(s)	69, 418
FaqI	GGGAC	1 cut(s)	92
FatI	CATG	2 cut(s)	65, 414
FauI	CCCGC	2 cut(s)	118, 585
Fnu4HI	GCNGC	5 cut(s)	123, 523, 526, 630, 681
FokI	GGATG	1 cut(s)	597
FriOI	GRGCYC	2 cut(s)	575, 598
Fsp4HI	GCNGC	5 cut(s)	123, 523, 526, 630, 681
GlaI	GCGC	1 cut(s)	45
GluI	GCNGC	5 cut(s)	123, 523, 526, 630, 681
HaeIII	GGCC	1 cut(s)	404
HapII	CCGG	4 cut(s)	89, 100, 114, 365
HhaI	GCGC	1 cut(s)	46
Hin1I	GRCGYC	1 cut(s)	140
Hin1II	CATG	2 cut(s)	69, 418
Hin6I	GCGC	1 cut(s)	44
HinP1I	GCGC	1 cut(s)	44
HindIII	AAGCTT	1 cut(s)	433
HinfI	GANTC	4 cut(s)	83, 173, 316, 560
HpaII	CCGG	4 cut(s)	89, 100, 114, 365
HphI	GGTGA	1 cut(s)	579
Hpy188I	TCNGA	1 cut(s)	532
Hpy188III	TCNNGA	2 cut(s)	154, 313
Hpy99I	CGWCG	5 cut(s)	139, 142, 145, 148, 151
HpyAV	CCTTC	1 cut(s)	319
HpyCH4III	ACNGT	2 cut(s)	106, 688
HpyCH4IV	ACGT	1 cut(s)	140
HpyCH4V	TGCA	5 cut(s)	359, 374, 661, 683, 727
HpyF10VI	GCNNNNNNNGC	3 cut(s)	119, 189, 677
HpyF3I	CTNAG	1 cut(s)	443
HpySE526I	ACGT	1 cut(s)	140
Hsp92I	GRCGYC	1 cut(s)	140
Hsp92II	CATG	2 cut(s)	69, 418
HspAI	GCGC	1 cut(s)	44
KroI	GCCGGC	1 cut(s)	113
KroNI	GCCGGC	1 cut(s)	115
KspI	CCGCGG	1 cut(s)	593
Kzo9I	GATC	4 cut(s)	6, 33, 150, 276
LguI	GCTCTTC	2 cut(s)	83, 603
LmnI	GCTCC	1 cut(s)	180
Lsp1109I	GCAGC	5 cut(s)	109, 512, 534, 641, 667
MaeII	ACGT	1 cut(s)	140
MaeIII	GTNAC	1 cut(s)	585
MalI	GATC	4 cut(s)	8, 35, 152, 278
MboI	GATC	4 cut(s)	6, 33, 150, 276
MboII	GAAGA	6 cut(s)	70, 123, 327, 330, 436, 590
MflI	RGATCY	1 cut(s)	276
MhlI	GDGCHC	2 cut(s)	575, 598
MluCI	AATT	4 cut(s)	284, 515, 565, 622
MlyI	GAGTC	2 cut(s)	182, 325
MmeI	TCCRAC	4 cut(s)	228, 366, 399, 432
Mph1103I	ATGCAT	1 cut(s)	376
MreI	CGCCGGCG	1 cut(s)	113
MroNI	GCCGGC	1 cut(s)	113
MseI	TTAA	1 cut(s)	513
MspA1I	CMGCKG	2 cut(s)	525, 592
MspI	CCGG	4 cut(s)	89, 100, 114, 365
MspR9I	CCNGG	1 cut(s)	31
Mva1269I	GAATGC	2 cut(s)	247, 697
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	2 cut(s)	44, 592
MwoI	GCNNNNNNNGC	3 cut(s)	119, 189, 677
NaeI	GCCGGC	1 cut(s)	115
NdeII	GATC	4 cut(s)	6, 33, 150, 276
NgoMIV	GCCGGC	1 cut(s)	113
NlaIII	CATG	2 cut(s)	69, 418
NlaIV	GGNNCC	1 cut(s)	395
NmuCI	GTSAC	1 cut(s)	585
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	2 cut(s)	69, 418
NspV	TTCGAA	1 cut(s)	563
PciI	ACATGT	1 cut(s)	414
PciSI	GCTCTTC	2 cut(s)	83, 603
PcsI	WCGNNNNNNNCGW	3 cut(s)	140, 143, 146
PctI	GAATGC	2 cut(s)	247, 697
PdiI	GCCGGC	1 cut(s)	115
PfeI	GAWTC	2 cut(s)	83, 560
PflFI	GACNNNGTC	2 cut(s)	139, 142
PkrI	GCNGC	5 cut(s)	124, 524, 527, 631, 682
Ple19I	CGATCG	2 cut(s)	9, 153
PleI	GAGTC	2 cut(s)	181, 324
PpsI	GAGTC	2 cut(s)	181, 324
PpuMI	RGGWCCY	1 cut(s)	224
PscI	ACATGT	1 cut(s)	414
Psp124BI	GAGCTC	1 cut(s)	575
Psp5II	RGGWCCY	1 cut(s)	224
Psp6I	CCWGG	1 cut(s)	29
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	395
PspPI	GGNCC	1 cut(s)	224
PspPPI	RGGWCCY	1 cut(s)	224
PsuI	RGATCY	1 cut(s)	276
PsyI	GACNNNGTC	2 cut(s)	139, 142
PvuI	CGATCG	2 cut(s)	9, 153
PvuII	CAGCTG	1 cut(s)	525
RsaI	GTAC	3 cut(s)	28, 541, 550
RsaNI	GTAC	3 cut(s)	27, 540, 549
SacI	GAGCTC	1 cut(s)	575
SacII	CCGCGG	1 cut(s)	593
SapI	GCTCTTC	2 cut(s)	83, 603
SaqAI	TTAA	1 cut(s)	513
SatI	GCNGC	5 cut(s)	123, 523, 526, 630, 681
Sau3AI	GATC	4 cut(s)	6, 33, 150, 276
Sau96I	GGNCC	1 cut(s)	224
SchI	GAGTC	2 cut(s)	182, 325
ScrFI	CCNGG	1 cut(s)	31
SduI	GDGCHC	2 cut(s)	575, 598
Sfr303I	CCGCGG	1 cut(s)	593
SfuI	TTCGAA	1 cut(s)	563
SgrAI	CRCCGGYG	1 cut(s)	113
SgrBI	CCGCGG	1 cut(s)	593
SinI	GGWCC	1 cut(s)	224
Sse9I	AATT	4 cut(s)	284, 515, 565, 622
SsiI	CCGC	6 cut(s)	111, 125, 590, 592, 602, 627
SstI	GAGCTC	1 cut(s)	575
StyD4I	CCNGG	1 cut(s)	29
StyI	CCWWGG	1 cut(s)	648
TaaI	ACNGT	2 cut(s)	106, 688
TaiI	ACGT	1 cut(s)	143
TaqI	TCGA	9 cut(s)	5, 36, 81, 134, 149, 490, 563, 569, 581
TasI	AATT	4 cut(s)	284, 515, 565, 622
TatI	WGTACW	1 cut(s)	548
TfiI	GAWTC	2 cut(s)	83, 560
Tru1I	TTAA	1 cut(s)	513
Tru9I	TTAA	1 cut(s)	513
TscAI	CASTG	2 cut(s)	447, 621
TseFI	GTSAC	1 cut(s)	585
TseI	GCWGC	5 cut(s)	122, 522, 525, 629, 680
Tsp45I	GTSAC	1 cut(s)	585
TspDTI	ATGAA	2 cut(s)	254, 321
TspRI	CASTG	2 cut(s)	447, 621
Tth111I	GACNNNGTC	2 cut(s)	139, 142
VpaK11BI	GGWCC	1 cut(s)	224
XapI	RAATTY	3 cut(s)	284, 565, 622
XceI	RCATGY	2 cut(s)	69, 418
XcmI	CCANNNNNNNNNTGG	1 cut(s)	415
ZraI	GACGTC	1 cut(s)	141
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.