RLG00000010816

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000728
Physical Location & Seq
Forward (+)
4563120 .. 4566221
3102 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000010816

Sequence Viewer

Length: 510 bp
ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACGGTCCGGGAGGTTCATCCATGGGATGCCTTGTATTTCGATCTACGACACAAAAGGGTTTGATGAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGAGGTCCTCGTCGGTTGGTAATAACAGTGATGAGTCTAATGGGTCGTCGGAGGGTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCATGGACCAGCTTGAGGAAGTTTTGCCTGTCAATTCTAAGGTTGCCTTTTCCCAATCTATTCTCAGCGTCCTTATTGCATCCTCTTTAGATGCTATGAGTATGACCAAGTTGAGGAAGCTAAACCGAACTATGGCTCATCGCCTGTCCATGCTGACGACACAGGTGTCGCAGTTGGTGAAGATCGAACGCATTGAAACCACGGTTGCCAAGATCGACCAGTTTGCCCCTTCTAAACAAGATAAGAGCAAGCGCTCCGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.58

Weight (kDa)

5.75

Isoelectric Point (pI)

62.77

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 409
AclWI GGATC 2 cut(s) 40, 126
AfeI AGCGCT 1 cut(s) 497
AfiI CCNNNNNNNGG 4 cut(s) 56, 259, 357, 376
AgsI TTSAA 1 cut(s) 440
AluBI AGCT 4 cut(s) 153, 222, 256, 364
AluI AGCT 4 cut(s) 153, 222, 256, 364
Alw21I GWGCWC 1 cut(s) 224
AlwI GGATC 2 cut(s) 40, 126
Ama87I CYCGRG 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 497
AoxI GGCC 1 cut(s) 233
AspLEI GCGC 1 cut(s) 498
AspS9I GGNCC 4 cut(s) 54, 159, 233, 250
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 2 cut(s) 221, 433
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 3 cut(s) 54, 159, 250
BanII GRGCYC 1 cut(s) 224
Bbv12I GWGCWC 1 cut(s) 224
BcgI CGANNNNNNTGC 2 cut(s) 449, 483
BcnI CCSGG 1 cut(s) 58
BfaI CTAG 1 cut(s) 147
BfoI RGCGCY 1 cut(s) 499
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 3 cut(s) 54, 159, 250
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 4 cut(s) 54, 159, 233, 250
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 3 cut(s) 66, 325, 332
BplI GAGNNNNNCTC 2 cut(s) 128, 160
BpuEI CTTGAG 1 cut(s) 278
BpuMI CCSGG 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 4 cut(s) 50, 70, 246, 444
Bsc4I CCNNNNNNNGG 4 cut(s) 56, 259, 357, 376
Bse1I ACTGG 1 cut(s) 463
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 4 cut(s) 50, 70, 246, 444
BseGI GGATG 3 cut(s) 66, 81, 323
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 4 cut(s) 56, 259, 357, 376
BseMII CTCAG 1 cut(s) 322
BseNI ACTGG 1 cut(s) 463
BseRI GAGGAG 1 cut(s) 152
BshFI GGCC 1 cut(s) 235
BsiHKAI GWGCWC 1 cut(s) 224
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 4 cut(s) 56, 259, 357, 376
BsnI GGCC 1 cut(s) 235
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 224
Bsp143I GATC 5 cut(s) 45, 90, 118, 426, 456
Bsp19I CCATGG 2 cut(s) 70, 246
BspANI GGCC 1 cut(s) 235
BspCNI CTCAG 1 cut(s) 321
BspPI GGATC 2 cut(s) 40, 126
BsrI ACTGG 1 cut(s) 463
BssECI CCNNGG 4 cut(s) 50, 70, 246, 444
BssMI GATC 5 cut(s) 45, 90, 118, 426, 456
BssT1I CCWWGG 2 cut(s) 70, 246
Bst4CI ACNGT 3 cut(s) 54, 182, 448
BstC8I GCNNGC 1 cut(s) 494
BstDEI CTNAG 2 cut(s) 282, 308
BstDSI CCRYGG 4 cut(s) 50, 70, 246, 444
BstF5I GGATG 3 cut(s) 66, 81, 323
BstH2I RGCGCY 1 cut(s) 499
BstHHI GCGC 1 cut(s) 498
BstKTI GATC 5 cut(s) 48, 93, 121, 429, 459
BstMBI GATC 5 cut(s) 45, 90, 118, 426, 456
BstSCI CCNGG 1 cut(s) 56
BsuRI GGCC 1 cut(s) 235
BtgI CCRYGG 4 cut(s) 50, 70, 246, 444
BtgZI GCGATG 1 cut(s) 368
BtsCI GGATG 3 cut(s) 66, 81, 323
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 494
CfoI GCGC 1 cut(s) 498
Cfr13I GGNCC 4 cut(s) 54, 159, 233, 250
CpoI CGGWCCG 1 cut(s) 54
CseI GACGC 1 cut(s) 301
CspI CGGWCCG 1 cut(s) 54
CviAII CATG 3 cut(s) 71, 247, 394
CviJI RGCY 6 cut(s) 153, 222, 235, 256, 364, 380
CviKI_1 RGCY 6 cut(s) 153, 222, 235, 256, 364, 380
DdeI CTNAG 2 cut(s) 282, 308
DpnI GATC 5 cut(s) 47, 92, 120, 428, 458
DpnII GATC 5 cut(s) 45, 90, 118, 426, 456
DraI TTTAAA 1 cut(s) 229
DrdI GACNNNNNNGTC 1 cut(s) 409
DseDI GACNNNNNNGTC 1 cut(s) 409
Ecl136II GAGCTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 70, 246
Eco24I GRGCYC 1 cut(s) 224
Eco47I GGWCC 3 cut(s) 54, 159, 250
Eco47III AGCGCT 1 cut(s) 497
Eco53kI GAGCTC 1 cut(s) 222
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 222
EcoO109I RGGNCCY 2 cut(s) 159, 233
EcoT14I CCWWGG 2 cut(s) 70, 246
EcoT38I GRGCYC 1 cut(s) 224
ErhI CCWWGG 2 cut(s) 70, 246
FaeI CATG 3 cut(s) 74, 250, 397
FaiI YATR 7 cut(s) 44, 72, 248, 341, 347, 377, 395
FalI AAGNNNNNCTT 2 cut(s) 275, 307
FatI CATG 3 cut(s) 70, 246, 393
FokI GGATG 3 cut(s) 53, 88, 310
FriOI GRGCYC 1 cut(s) 224
FspBI CTAG 1 cut(s) 147
GlaI GCGC 1 cut(s) 497
HaeII RGCGCY 1 cut(s) 499
HaeIII GGCC 1 cut(s) 235
HapII CCGG 1 cut(s) 57
HgaI GACGC 1 cut(s) 301
HhaI GCGC 1 cut(s) 498
Hin1II CATG 3 cut(s) 74, 250, 397
Hin6I GCGC 1 cut(s) 496
HinP1I GCGC 1 cut(s) 496
HinfI GANTC 2 cut(s) 143, 188
HpaII CCGG 1 cut(s) 57
HphI GGTGA 2 cut(s) 221, 433
Hpy188I TCNGA 3 cut(s) 205, 219, 502
Hpy99I CGWCG 3 cut(s) 126, 169, 205
HpyAV CCTTC 1 cut(s) 483
HpyCH4III ACNGT 3 cut(s) 54, 182, 448
HpyCH4V TGCA 1 cut(s) 323
HpyF3I CTNAG 2 cut(s) 282, 308
Hsp92II CATG 3 cut(s) 74, 250, 397
HspAI GCGC 1 cut(s) 496
Kzo9I GATC 5 cut(s) 45, 90, 118, 426, 456
LmnI GCTCC 1 cut(s) 503
LpnPI CCDG 6 cut(s) 70, 266, 285, 392, 401, 476
LweI GCATC 3 cut(s) 66, 325, 332
MaeI CTAG 1 cut(s) 147
MalI GATC 5 cut(s) 47, 92, 120, 428, 458
MboI GATC 5 cut(s) 45, 90, 118, 426, 456
MboII GAAGA 1 cut(s) 436
MhlI GDGCHC 1 cut(s) 224
MluCI AATT 1 cut(s) 277
MlyI GAGTC 2 cut(s) 137, 197
MmeI TCCRAC 2 cut(s) 114, 183
MseI TTAA 1 cut(s) 228
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 2 cut(s) 70, 246
NdeII GATC 5 cut(s) 45, 90, 118, 426, 456
NlaIII CATG 3 cut(s) 74, 250, 397
PaeR7I CTCGAG 1 cut(s) 154
PcsI WCGNNNNNNNCGW 1 cut(s) 161
PfoI TCCNGGA 1 cut(s) 56
PleI GAGTC 2 cut(s) 137, 196
PpsI GAGTC 2 cut(s) 137, 196
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 224
Psp5II RGGWCCY 1 cut(s) 159
PspPI GGNCC 4 cut(s) 54, 159, 233, 250
PspPPI RGGWCCY 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 154
Rsr2I CGGWCCG 1 cut(s) 54
RsrII CGGWCCG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 224
SaqAI TTAA 1 cut(s) 228
Sau3AI GATC 5 cut(s) 45, 90, 118, 426, 456
Sau96I GGNCC 4 cut(s) 54, 159, 233, 250
SchI GAGTC 2 cut(s) 137, 197
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 224
SetI ASST 9 cut(s) 65, 155, 161, 216, 224, 258, 288, 366, 411
SfaNI GCATC 3 cut(s) 66, 325, 332
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 3 cut(s) 54, 159, 250
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 154, 257
SmoI CTYRAG 2 cut(s) 154, 257
Sse9I AATT 1 cut(s) 277
SspMI CTAG 1 cut(s) 147
SstI GAGCTC 1 cut(s) 224
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 70, 246
TaaI ACNGT 3 cut(s) 54, 182, 448
TaqI TCGA 4 cut(s) 89, 155, 429, 459
TasI AATT 1 cut(s) 277
Tru1I TTAA 1 cut(s) 228
Tru9I TTAA 1 cut(s) 228
TscAI CASTG 1 cut(s) 187
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 3 cut(s) 54, 159, 250
XhoI CTCGAG 1 cut(s) 154
XspI CTAG 1 cut(s) 147
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.