Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Forward (+)

84662205 .. 84664802

Gene Structure 2598 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00146770.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 768 bp

ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACGGTCCGGGAGGTTCATCCATGGGATGCCTTGTATTTCGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGAGGTCGTCGTCGGTTGGTAATAACAGTGACGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGGTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCATGGACCAGCTTGAGGAGGTTTTGCCTGTCAAGAGAGGAATATCTAAGTTCTATAATGGTAAATCAAAGTCTTTCACGAGCTTAGCAGATGCATCATCTGTTTCTACTGTTAAGGAGCTTGCAAAGCCAGTAAATCCTTATAACAAGAAGCGCAAGAATCTGTTGGCCAATAGTTATTTCCGGGATCTGAAGAATAGTGGTGGTGGGATAAGGAGATCAGCTAGCTCTAGTCGAGGCATATATCTTGCTGGGGAGACTCTTAGCGGCTCTAACAGTGGGGACGATTCCAAGTCTATTTCACCTTCACCCTTTTCTTGTCGTCCTCCTCTACATCCGCACCGTAAAAGATCACCTGGTAATGGGTCATCAGATTCTTCACCGCCTTCTCCTCCTCAACGAAATGCTCCTTGGCGATCATTCTCACTGTCTGATCTACAATGCGCCGCTGCACCAACAGCCAACATTACTGGCTTTGAAATTTGTAACGGGGACATGGACAACAATCCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

255

Amino Acids

27.36

Weight (kDa)

8.31

Isoelectric Point (pI)

66.79

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AciI	CCGC	4 cut(s)	519, 590, 635, 699
AclWI	GGATC	3 cut(s)	40, 126, 447
AcoI	YGGCCR	1 cut(s)	420
AcsI	RAATTY	1 cut(s)	732
AcuI	CTGAAG	1 cut(s)	464
AfiI	CCNNNNNNNGG	3 cut(s)	56, 268, 614
AgsI	TTSAA	1 cut(s)	731
AjnI	CCWGG	1 cut(s)	607
AjuI	GAANNNNNNNTTGG	4 cut(s)	416, 448, 646, 678
AluBI	AGCT	7 cut(s)	153, 231, 265, 336, 373, 476, 480
AluI	AGCT	7 cut(s)	153, 231, 265, 336, 373, 476, 480
Alw21I	GWGCWC	1 cut(s)	233
Alw26I	GTCTC	1 cut(s)	503
AlwI	GGATC	3 cut(s)	40, 126, 447
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	242, 420
ApeKI	GCWGC	1 cut(s)	701
ApoI	RAATTY	1 cut(s)	732
AspLEI	GCGC	2 cut(s)	408, 698
AspS9I	GGNCC	3 cut(s)	54, 242, 259
AsuC2I	CCSGG	2 cut(s)	58, 437
AsuHPI	GGTGA	6 cut(s)	221, 230, 546, 552, 597, 624
AsuNHI	GCTAGC	1 cut(s)	476
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	54, 259
BalI	TGGCCA	1 cut(s)	422
BanII	GRGCYC	1 cut(s)	233
BauI	CACGAG	1 cut(s)	331
Bbv12I	GWGCWC	1 cut(s)	233
BbvI	GCAGC	1 cut(s)	688
BciT130I	CCWGG	1 cut(s)	609
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	58, 437
BcoDI	GTCTC	1 cut(s)	503
BfaI	CTAG	3 cut(s)	147, 477, 483
BisI	GCNGC	3 cut(s)	520, 699, 702
BlpI	GCTNAGC	1 cut(s)	337
BlsI	GCNGC	3 cut(s)	521, 700, 703
Bme1390I	CCNGG	3 cut(s)	58, 437, 609
Bme18I	GGWCC	2 cut(s)	54, 259
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	54, 242, 259
BmrFI	CCNGG	3 cut(s)	58, 437, 609
BmsI	GCATC	3 cut(s)	66, 334, 356
BmtI	GCTAGC	1 cut(s)	480
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
Bpu1102I	GCTNAGC	1 cut(s)	337
BpuEI	CTTGAG	1 cut(s)	287
BpuMI	CCSGG	2 cut(s)	58, 437
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	50, 70, 255, 662
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 268, 614
Bse1I	ACTGG	2 cut(s)	383, 727
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	1 cut(s)	609
BseDI	CCNNGG	4 cut(s)	50, 70, 255, 662
BseGI	GGATG	3 cut(s)	66, 81, 586
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	56, 268, 614
BseNI	ACTGG	2 cut(s)	383, 727
BseRI	GAGGAG	6 cut(s)	152, 227, 284, 570, 633, 636
BseXI	GCAGC	1 cut(s)	688
BseYI	CCCAGC	1 cut(s)	503
BsgI	GTGCAG	1 cut(s)	687
BshFI	GGCC	2 cut(s)	244, 422
BsiHKAI	GWGCWC	1 cut(s)	233
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	57, 436
BslFI	GGGAC	2 cut(s)	548, 758
BslI	CCNNNNNNNGG	3 cut(s)	56, 268, 614
BsmAI	GTCTC	1 cut(s)	503
BsmFI	GGGAC	2 cut(s)	548, 758
BsnI	GGCC	2 cut(s)	244, 422
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	233
Bsp143I	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
Bsp1720I	GCTNAGC	1 cut(s)	337
Bsp19I	CCATGG	2 cut(s)	70, 255
BspACI	CCGC	4 cut(s)	519, 590, 635, 699
BspANI	GGCC	2 cut(s)	244, 422
BspOI	GCTAGC	1 cut(s)	480
BspPI	GGATC	3 cut(s)	40, 126, 447
BsrI	ACTGG	2 cut(s)	383, 727
BssECI	CCNNGG	4 cut(s)	50, 70, 255, 662
BssMI	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
BssSI	CACGAG	1 cut(s)	331
BssT1I	CCWWGG	3 cut(s)	70, 255, 662
Bst2BI	CACGAG	1 cut(s)	331
Bst2UI	CCWGG	1 cut(s)	609
Bst4CI	ACNGT	6 cut(s)	54, 182, 364, 530, 596, 681
BstC8I	GCNNGC	2 cut(s)	375, 478
BstDEI	CTNAG	3 cut(s)	300, 337, 515
BstDSI	CCRYGG	3 cut(s)	50, 70, 255
BstF5I	GGATG	3 cut(s)	66, 81, 586
BstHHI	GCGC	2 cut(s)	408, 698
BstKTI	GATC	9 cut(s)	48, 93, 115, 121, 442, 473, 605, 671, 688
BstMAI	GTCTC	1 cut(s)	503
BstMBI	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
BstMWI	GCNNNNNNNGC	2 cut(s)	379, 710
BstNI	CCWGG	1 cut(s)	609
BstSCI	CCNGG	3 cut(s)	56, 435, 607
BstV1I	GCAGC	1 cut(s)	688
BstX2I	RGATCY	1 cut(s)	439
BstYI	RGATCY	1 cut(s)	439
BsuRI	GGCC	2 cut(s)	244, 422
BtgI	CCRYGG	3 cut(s)	50, 70, 255
BtsCI	GGATG	3 cut(s)	66, 81, 586
BtsIMutI	CAGTG	3 cut(s)	187, 535, 677
Cac8I	GCNNGC	2 cut(s)	375, 478
CfoI	GCGC	2 cut(s)	408, 698
Cfr13I	GGNCC	3 cut(s)	54, 242, 259
CpoI	CGGWCCG	1 cut(s)	54
CsiI	ACCWGGT	1 cut(s)	607
CspI	CGGWCCG	1 cut(s)	54
CviAII	CATG	3 cut(s)	71, 256, 748
DdeI	CTNAG	3 cut(s)	300, 337, 515
DpnI	GATC	9 cut(s)	47, 92, 114, 120, 441, 472, 604, 670, 687
DpnII	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
DraI	TTTAAA	1 cut(s)	238
EaeI	YGGCCR	1 cut(s)	420
Ecl136II	GAGCTC	1 cut(s)	231
Eco130I	CCWWGG	3 cut(s)	70, 255, 662
Eco24I	GRGCYC	1 cut(s)	233
Eco47I	GGWCC	2 cut(s)	54, 259
Eco53kI	GAGCTC	1 cut(s)	231
Eco57I	CTGAAG	1 cut(s)	464
Eco88I	CYCGRG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	231
EcoO109I	RGGNCCY	1 cut(s)	242
EcoRII	CCWGG	1 cut(s)	607
EcoT14I	CCWWGG	3 cut(s)	70, 255, 662
EcoT22I	ATGCAT	1 cut(s)	349
EcoT38I	GRGCYC	1 cut(s)	233
ErhI	CCWWGG	3 cut(s)	70, 255, 662
FaeI	CATG	3 cut(s)	74, 259, 751
FaiI	YATR	8 cut(s)	44, 72, 257, 309, 396, 494, 496, 749
FaqI	GGGAC	2 cut(s)	548, 758
FatI	CATG	3 cut(s)	70, 255, 747
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	3 cut(s)	520, 699, 702
FokI	GGATG	3 cut(s)	53, 88, 573
FriOI	GRGCYC	1 cut(s)	233
Fsp4HI	GCNGC	3 cut(s)	520, 699, 702
FspBI	CTAG	3 cut(s)	147, 477, 483
GlaI	GCGC	2 cut(s)	407, 697
GluI	GCNGC	3 cut(s)	520, 699, 702
GsaI	CCCAGC	1 cut(s)	507
HaeIII	GGCC	2 cut(s)	244, 422
HapII	CCGG	2 cut(s)	57, 436
HhaI	GCGC	2 cut(s)	408, 698
Hin1II	CATG	3 cut(s)	74, 259, 751
Hin6I	GCGC	2 cut(s)	406, 696
HinP1I	GCGC	2 cut(s)	406, 696
HinfI	GANTC	6 cut(s)	143, 188, 412, 511, 539, 626
HpaII	CCGG	2 cut(s)	57, 436
HphI	GGTGA	6 cut(s)	221, 230, 546, 552, 597, 624
Hpy188I	TCNGA	5 cut(s)	205, 228, 444, 625, 685
Hpy188III	TCNNGA	3 cut(s)	116, 286, 331
Hpy99I	CGWCG	4 cut(s)	126, 166, 169, 205
HpyAV	CCTTC	2 cut(s)	567, 648
HpyCH4III	ACNGT	6 cut(s)	54, 182, 364, 530, 596, 681
HpyCH4V	TGCA	3 cut(s)	347, 377, 704
HpyF10VI	GCNNNNNNNGC	2 cut(s)	379, 710
HpyF3I	CTNAG	3 cut(s)	300, 337, 515
Hsp92II	CATG	3 cut(s)	74, 259, 751
HspAI	GCGC	2 cut(s)	406, 696
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
LmnI	GCTCC	2 cut(s)	370, 664
Lsp1109I	GCAGC	1 cut(s)	688
LweI	GCATC	3 cut(s)	66, 334, 356
MabI	ACCWGGT	1 cut(s)	607
MaeI	CTAG	3 cut(s)	147, 477, 483
MaeIII	GTNAC	2 cut(s)	182, 737
MalI	GATC	9 cut(s)	47, 92, 114, 120, 441, 472, 604, 670, 687
MboI	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
MboII	GAAGA	2 cut(s)	457, 621
MflI	RGATCY	1 cut(s)	439
MhlI	GDGCHC	1 cut(s)	233
MlsI	TGGCCA	1 cut(s)	422
MluCI	AATT	1 cut(s)	732
MluNI	TGGCCA	1 cut(s)	422
MlyI	GAGTC	3 cut(s)	137, 197, 505
MmeI	TCCRAC	2 cut(s)	114, 183
Mox20I	TGGCCA	1 cut(s)	422
Mph1103I	ATGCAT	1 cut(s)	349
MscI	TGGCCA	1 cut(s)	422
MseI	TTAA	3 cut(s)	237, 366, 766
Msp20I	TGGCCA	1 cut(s)	422
MspA1I	CMGCKG	1 cut(s)	701
MspI	CCGG	2 cut(s)	57, 436
MspR9I	CCNGG	3 cut(s)	58, 437, 609
MvaI	CCWGG	1 cut(s)	609
MwoI	GCNNNNNNNGC	2 cut(s)	379, 710
NciI	CCSGG	2 cut(s)	58, 437
NcoI	CCATGG	2 cut(s)	70, 255
NdeII	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
NheI	GCTAGC	1 cut(s)	476
NlaIII	CATG	3 cut(s)	74, 259, 751
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	349
PaeR7I	CTCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	412, 539, 626
PfoI	TCCNGGA	2 cut(s)	56, 435
PkrI	GCNGC	3 cut(s)	521, 700, 703
PleI	GAGTC	3 cut(s)	137, 196, 505
PpsI	GAGTC	3 cut(s)	137, 196, 505
PsiI	TTATAA	1 cut(s)	396
Psp124BI	GAGCTC	1 cut(s)	233
Psp6I	CCWGG	1 cut(s)	607
PspFI	CCCAGC	1 cut(s)	503
PspGI	CCWGG	1 cut(s)	607
PspPI	GGNCC	3 cut(s)	54, 242, 259
PspXI	VCTCGAGB	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	439
Rsr2I	CGGWCCG	1 cut(s)	54
RsrII	CGGWCCG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	233
SaqAI	TTAA	3 cut(s)	237, 366, 766
SatI	GCNGC	3 cut(s)	520, 699, 702
Sau3AI	GATC	9 cut(s)	45, 90, 112, 118, 439, 470, 602, 668, 685
Sau96I	GGNCC	3 cut(s)	54, 242, 259
SchI	GAGTC	3 cut(s)	137, 197, 505
ScrFI	CCNGG	3 cut(s)	58, 437, 609
SduI	GDGCHC	1 cut(s)	233
SexAI	ACCWGGT	1 cut(s)	607
SfaNI	GCATC	3 cut(s)	66, 334, 356
Sfr274I	CTCGAG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	54, 259
SlaI	CTCGAG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	154, 266
SmoI	CTYRAG	2 cut(s)	154, 266
Sse9I	AATT	1 cut(s)	732
SsiI	CCGC	4 cut(s)	519, 590, 635, 699
SspMI	CTAG	3 cut(s)	147, 477, 483
SstI	GAGCTC	1 cut(s)	233
StyD4I	CCNGG	3 cut(s)	56, 435, 607
StyI	CCWWGG	3 cut(s)	70, 255, 662
TaaI	ACNGT	6 cut(s)	54, 182, 364, 530, 596, 681
TaqI	TCGA	3 cut(s)	89, 155, 487
TasI	AATT	1 cut(s)	732
TauI	GCSGC	2 cut(s)	522, 701
TfiI	GAWTC	3 cut(s)	412, 539, 626
Tru1I	TTAA	3 cut(s)	237, 366, 766
Tru9I	TTAA	3 cut(s)	237, 366, 766
TscAI	CASTG	3 cut(s)	187, 535, 684
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	1 cut(s)	701
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	187, 535, 684
VpaK11BI	GGWCC	2 cut(s)	54, 259
XapI	RAATTY	1 cut(s)	732
XhoI	CTCGAG	1 cut(s)	154
XspI	CTAG	3 cut(s)	147, 477, 483
Zsp2I	ATGCAT	1 cut(s)	349

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.