Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

4603110 .. 4604161

Gene Structure 1052 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g06000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 687 bp

ATGTCGATTGCATTGAATAGCACCGCGGCTAGGATCGGCATCGCGCCGTCGTCTGGTTTCGCGCACGGCGGGGTCGCGTGTGGTGGGTTGCTCTTCGACTCGCCGGAAAACCGCCGGGGGGTTCCCGCCGGTGAGGTTTCGGTTTCTTCTTCGAGTTCGTCGTCGATCGGGAAGAACAGCGACGATGAATCGGAGAGATACGACGGCGGCGAAAATGATGAGGCTCAGAGCTCGTATAAAGGTCCGTTGGATATGATGAACGAGTTGGAGGAAGTTTTACCCATGAGGAGAGGGATCTCAAAGCACTACAACTATAAATCCAAGTCCTTCACAAGTCTAGTAGAAGCTTCATCTTCTTCCAACATCAAGGAGCTTGCAAAACCAGACAATGCCTACACCCGAAAACGCAGGAACCTCCTTGCCTCCAACCACATGTGGGAGAAGAACCGAACCTCCTTCCCGCTGAGAAGCAATGGCGGCGGAATTTCAAAGAGGCCGATTCCGTCCAGTCGAAGCGCATTGGCTCTGGCTGTGAAGCTGGGCAGCTGCTCGGAAAGCAGTACTAGTAGCACAAGTGAGGAATCCAATTCGAGCTCAAATCCGTCGTCGCCGCGGCCACCTCTCCCACCGGGTAACGCTTGTGCACTAGGAAGTTATGCAGCTTGGAGATCGATATTCATTGGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

229

Amino Acids

24.1

Weight (kDa)

8.99

Isoelectric Point (pI)

76.68

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	5 cut(s)	26, 44, 62, 77, 613
AclWI	GGATC	2 cut(s)	41, 302
AcoI	YGGCCR	1 cut(s)	614
AcsI	RAATTY	1 cut(s)	483
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	4 cut(s)	30, 53, 118, 436
AflIII	ACRYGT	1 cut(s)	432
AgsI	TTSAA	2 cut(s)	16, 489
AhlI	ACTAGT	1 cut(s)	563
AloI	GAACNNNNNNTCC	2 cut(s)	437, 469
AluBI	AGCT	7 cut(s)	231, 347, 373, 538, 546, 594, 662
AluI	AGCT	7 cut(s)	231, 347, 373, 538, 546, 594, 662
Alw21I	GWGCWC	3 cut(s)	233, 596, 646
Alw44I	GTGCAC	1 cut(s)	642
AlwI	GGATC	2 cut(s)	41, 302
AoxI	GGCC	2 cut(s)	494, 614
ApaLI	GTGCAC	1 cut(s)	642
ApeKI	GCWGC	3 cut(s)	543, 546, 659
ApoI	RAATTY	1 cut(s)	483
ArsI	GACNNNNNNTTYG	2 cut(s)	590, 622
AspLEI	GCGC	3 cut(s)	46, 64, 518
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	2 cut(s)	116, 630
AsuHPI	GGTGA	1 cut(s)	143
AvaII	GGWCC	1 cut(s)	242
BaeGI	GKGCMC	1 cut(s)	646
BanII	GRGCYC	2 cut(s)	233, 596
Bbv12I	GWGCWC	3 cut(s)	233, 596, 646
BbvI	GCAGC	3 cut(s)	533, 555, 671
BceAI	ACGGC	3 cut(s)	31, 82, 220
BcnI	CCSGG	2 cut(s)	116, 630
BcuI	ACTAGT	1 cut(s)	563
BfaI	CTAG	4 cut(s)	30, 338, 564, 647
BisI	GCNGC	8 cut(s)	27, 208, 478, 544, 547, 611, 614, 660
BlsI	GCNGC	8 cut(s)	28, 209, 479, 545, 548, 612, 615, 661
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	116, 630
Bme18I	GGWCC	1 cut(s)	242
BmgT120I	GGNCC	1 cut(s)	242
BmiI	GGNNCC	2 cut(s)	123, 413
BmrFI	CCNGG	2 cut(s)	116, 630
BmsI	GCATC	1 cut(s)	48
BpuMI	CCSGG	2 cut(s)	116, 630
Bsa29I	ATCGAT	1 cut(s)	671
BsaBI	GATNNNNATC	1 cut(s)	38
BsaJI	CCNNGG	3 cut(s)	24, 115, 611
BsaXI	ACNNNNNCTCC	2 cut(s)	437, 467
Bsc4I	CCNNNNNNNGG	4 cut(s)	30, 53, 118, 436
Bse118I	RCCGGY	1 cut(s)	128
Bse1I	ACTGG	1 cut(s)	507
Bse3DI	GCAATG	1 cut(s)	478
Bse8I	GATNNNNATC	1 cut(s)	38
BseCI	ATCGAT	1 cut(s)	671
BseDI	CCNNGG	3 cut(s)	24, 115, 611
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	4 cut(s)	30, 53, 118, 436
BseMI	GCAATG	1 cut(s)	478
BseMII	CTCAG	2 cut(s)	239, 455
BseNI	ACTGG	1 cut(s)	507
BseRI	GAGGAG	1 cut(s)	301
BseSI	GKGCMC	1 cut(s)	646
BseXI	GCAGC	3 cut(s)	533, 555, 671
BseYI	CCCAGC	1 cut(s)	538
Bsh1236I	CGCG	5 cut(s)	26, 44, 62, 77, 613
Bsh1285I	CGRYCG	1 cut(s)	168
BshFI	GGCC	2 cut(s)	496, 616
BshVI	ATCGAT	1 cut(s)	671
BsiEI	CGRYCG	1 cut(s)	168
BsiHKAI	GWGCWC	3 cut(s)	233, 596, 646
BsiSI	CCGG	4 cut(s)	104, 115, 129, 629
BslI	CCNNNNNNNGG	4 cut(s)	30, 53, 118, 436
BsnI	GGCC	2 cut(s)	496, 616
Bsp1286I	GDGCHC	3 cut(s)	233, 596, 646
Bsp143I	GATC	4 cut(s)	33, 165, 294, 668
BspANI	GGCC	2 cut(s)	496, 616
BspCNI	CTCAG	2 cut(s)	238, 456
BspDI	ATCGAT	1 cut(s)	671
BspFNI	CGCG	5 cut(s)	26, 44, 62, 77, 613
BspLI	GGNNCC	2 cut(s)	123, 413
BspPI	GGATC	2 cut(s)	41, 302
BspQI	GCTCTTC	1 cut(s)	98
BsrDI	GCAATG	1 cut(s)	478
BsrFI	RCCGGY	1 cut(s)	128
BsrI	ACTGG	1 cut(s)	507
BssAI	RCCGGY	1 cut(s)	128
BssECI	CCNNGG	3 cut(s)	24, 115, 611
BssMI	GATC	4 cut(s)	33, 165, 294, 668
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	1 cut(s)	375
BstDEI	CTNAG	2 cut(s)	225, 464
BstDSI	CCRYGG	2 cut(s)	24, 611
BstFNI	CGCG	5 cut(s)	26, 44, 62, 77, 613
BstHHI	GCGC	3 cut(s)	46, 64, 518
BstKTI	GATC	4 cut(s)	36, 168, 297, 671
BstMBI	GATC	4 cut(s)	33, 165, 294, 668
BstMCI	CGRYCG	1 cut(s)	168
BstMWI	GCNNNNNNNGC	2 cut(s)	477, 555
BstNSI	RCATGY	1 cut(s)	436
BstSCI	CCNGG	2 cut(s)	114, 628
BstSLI	GKGCMC	1 cut(s)	646
BstUI	CGCG	5 cut(s)	26, 44, 62, 77, 613
BstV1I	GCAGC	3 cut(s)	533, 555, 671
BstX2I	RGATCY	1 cut(s)	294
BstYI	RGATCY	1 cut(s)	294
Bsu15I	ATCGAT	1 cut(s)	671
BsuRI	GGCC	2 cut(s)	496, 616
BsuTUI	ATCGAT	1 cut(s)	671
BtgI	CCRYGG	2 cut(s)	24, 611
BtgZI	GCGATG	1 cut(s)	25
Cac8I	GCNNGC	1 cut(s)	375
CfoI	GCGC	3 cut(s)	46, 64, 518
Cfr10I	RCCGGY	1 cut(s)	128
Cfr13I	GGNCC	1 cut(s)	242
Cfr42I	CCGCGG	2 cut(s)	27, 614
ClaI	ATCGAT	1 cut(s)	671
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	2 cut(s)	283, 433
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	2 cut(s)	225, 464
DpnI	GATC	4 cut(s)	35, 167, 296, 670
DpnII	GATC	4 cut(s)	33, 165, 294, 668
EaeI	YGGCCR	1 cut(s)	614
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
EciI	GGCGGA	1 cut(s)	495
Ecl136II	GAGCTC	2 cut(s)	231, 594
Eco24I	GRGCYC	2 cut(s)	233, 596
Eco47I	GGWCC	1 cut(s)	242
Eco53kI	GAGCTC	2 cut(s)	231, 594
EcoICRI	GAGCTC	2 cut(s)	231, 594
EcoT38I	GRGCYC	2 cut(s)	233, 596
FaeI	CATG	2 cut(s)	286, 436
FaiI	YATR	6 cut(s)	237, 254, 284, 315, 434, 657
FatI	CATG	2 cut(s)	282, 432
FauI	CCCGC	3 cut(s)	62, 133, 468
Fnu4HI	GCNGC	8 cut(s)	27, 208, 478, 544, 547, 611, 614, 660
FriOI	GRGCYC	2 cut(s)	233, 596
Fsp4HI	GCNGC	8 cut(s)	27, 208, 478, 544, 547, 611, 614, 660
FspBI	CTAG	4 cut(s)	30, 338, 564, 647
GlaI	GCGC	3 cut(s)	45, 63, 517
GluI	GCNGC	8 cut(s)	27, 208, 478, 544, 547, 611, 614, 660
GsaI	CCCAGC	1 cut(s)	542
HaeIII	GGCC	2 cut(s)	496, 616
HapII	CCGG	4 cut(s)	104, 115, 129, 629
HhaI	GCGC	3 cut(s)	46, 64, 518
Hin1II	CATG	2 cut(s)	286, 436
Hin6I	GCGC	3 cut(s)	44, 62, 516
HinP1I	GCGC	3 cut(s)	44, 62, 516
HindIII	AAGCTT	1 cut(s)	345
HinfI	GANTC	4 cut(s)	98, 188, 499, 581
HpaII	CCGG	4 cut(s)	104, 115, 129, 629
HphI	GGTGA	1 cut(s)	143
Hpy166II	GTNNAC	1 cut(s)	644
Hpy188I	TCNGA	3 cut(s)	193, 228, 553
Hpy188III	TCNNGA	1 cut(s)	169
Hpy8I	GTNNAC	1 cut(s)	644
Hpy99I	CGWCG	7 cut(s)	52, 163, 166, 185, 206, 607, 610
HpyAV	CCTTC	2 cut(s)	337, 466
HpyCH4V	TGCA	4 cut(s)	11, 377, 644, 659
HpyF10VI	GCNNNNNNNGC	2 cut(s)	477, 555
HpyF3I	CTNAG	2 cut(s)	225, 464
Hsp92II	CATG	2 cut(s)	286, 436
HspAI	GCGC	3 cut(s)	44, 62, 516
KspI	CCGCGG	2 cut(s)	27, 614
Kzo9I	GATC	4 cut(s)	33, 165, 294, 668
LguI	GCTCTTC	1 cut(s)	98
LmnI	GCTCC	1 cut(s)	370
Lsp1109I	GCAGC	3 cut(s)	533, 555, 671
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	4 cut(s)	30, 338, 564, 647
MaeIII	GTNAC	1 cut(s)	632
MalI	GATC	4 cut(s)	35, 167, 296, 670
MboI	GATC	4 cut(s)	33, 165, 294, 668
MboII	GAAGA	7 cut(s)	85, 138, 141, 184, 345, 348, 454
MflI	RGATCY	1 cut(s)	294
MhlI	GDGCHC	3 cut(s)	233, 596, 646
MluCI	AATT	2 cut(s)	483, 586
MlyI	GAGTC	1 cut(s)	92
MmeI	TCCRAC	4 cut(s)	228, 246, 384, 450
MspA1I	CMGCKG	4 cut(s)	26, 463, 546, 613
MspI	CCGG	4 cut(s)	104, 115, 129, 629
MspR9I	CCNGG	2 cut(s)	116, 630
MvnI	CGCG	5 cut(s)	26, 44, 62, 77, 613
MwoI	GCNNNNNNNGC	2 cut(s)	477, 555
NciI	CCSGG	2 cut(s)	116, 630
NdeII	GATC	4 cut(s)	33, 165, 294, 668
NlaIII	CATG	2 cut(s)	286, 436
NlaIV	GGNNCC	2 cut(s)	123, 413
NspI	RCATGY	1 cut(s)	436
PciI	ACATGT	1 cut(s)	432
PciSI	GCTCTTC	1 cut(s)	98
PcsI	WCGNNNNNNNCGW	2 cut(s)	158, 207
PfeI	GAWTC	3 cut(s)	188, 499, 581
PkrI	GCNGC	8 cut(s)	28, 209, 479, 545, 548, 612, 615, 661
Ple19I	CGATCG	1 cut(s)	168
PleI	GAGTC	1 cut(s)	92
PpsI	GAGTC	1 cut(s)	92
PscI	ACATGT	1 cut(s)	432
Psp124BI	GAGCTC	2 cut(s)	233, 596
PspFI	CCCAGC	1 cut(s)	538
PspN4I	GGNNCC	2 cut(s)	123, 413
PspPI	GGNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	294
PvuI	CGATCG	1 cut(s)	168
PvuII	CAGCTG	1 cut(s)	546
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SacI	GAGCTC	2 cut(s)	233, 596
SacII	CCGCGG	2 cut(s)	27, 614
SapI	GCTCTTC	1 cut(s)	98
SatI	GCNGC	8 cut(s)	27, 208, 478, 544, 547, 611, 614, 660
Sau3AI	GATC	4 cut(s)	33, 165, 294, 668
Sau96I	GGNCC	1 cut(s)	242
ScaI	AGTACT	1 cut(s)	562
SchI	GAGTC	1 cut(s)	92
ScrFI	CCNGG	2 cut(s)	116, 630
SduI	GDGCHC	3 cut(s)	233, 596, 646
SfaNI	GCATC	1 cut(s)	48
Sfr303I	CCGCGG	2 cut(s)	27, 614
SgrAI	CRCCGGYG	1 cut(s)	128
SgrBI	CCGCGG	2 cut(s)	27, 614
SinI	GGWCC	1 cut(s)	242
SpeI	ACTAGT	1 cut(s)	563
Sse9I	AATT	2 cut(s)	483, 586
SspMI	CTAG	4 cut(s)	30, 338, 564, 647
SstI	GAGCTC	2 cut(s)	233, 596
StyD4I	CCNGG	2 cut(s)	114, 628
TaqI	TCGA	7 cut(s)	5, 96, 152, 164, 511, 590, 671
TasI	AATT	2 cut(s)	483, 586
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	5 cut(s)	29, 210, 480, 613, 616
TfiI	GAWTC	3 cut(s)	188, 499, 581
TseI	GCWGC	3 cut(s)	543, 546, 659
TspDTI	ATGAA	4 cut(s)	201, 272, 339, 667
TspGWI	ACGGA	3 cut(s)	234, 492, 591
VneI	GTGCAC	1 cut(s)	642
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	483
XceI	RCATGY	1 cut(s)	436
XspI	CTAG	4 cut(s)	30, 338, 564, 647
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.