Rmu_sc0002270.1_g000009

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002270.1
OG0000728
Physical Location & Seq
Reverse (-)
35622 .. 36329
708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0002270.1_g000009.1.cds

Sequence Viewer

Length: 417 bp
atgaaattagacttcctgccaattctgtcctcctcatctctctttgccgtcattatcattatcattccacatctcctccttcctcttcttcggtgcctggttctccatcctcttatctcagatcgccttcttcttcagctcgtcgctgttgacgtccttcaattcctggattctcgctggccttgcctccttcctctacgcagactttgggtcttctggaaatggaatagtgggaatggtatgatcccacggtccgggagattcatccatgggatgccttgtatttttatctacgacacaaaagggtttgatcaggatcgtcgtttggagttggaggaggactctagtagctcgaggtcctcgtcggttggtaataacagtgacgagtctaatgggtcgtcggagggtgaggtttag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

138

Amino Acids

15.67

Weight (kDa)

5.86

Isoelectric Point (pI)

66.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 156
AccB1I GGYRCC 1 cut(s) 93
AclWI GGATC 2 cut(s) 238, 324
AcuI CTGAAG 1 cut(s) 119
AcyI GRCGYC 1 cut(s) 153
AfiI CCNNNNNNNGG 1 cut(s) 254
AgsI TTSAA 1 cut(s) 161
AhdI GACNNNNNGTC 1 cut(s) 209
AjnI CCWGG 2 cut(s) 96, 165
AluBI AGCT 2 cut(s) 139, 351
AluI AGCT 2 cut(s) 139, 351
AlwI GGATC 2 cut(s) 238, 324
Ama87I CYCGRG 1 cut(s) 352
AoxI GGCC 1 cut(s) 179
AspS9I GGNCC 2 cut(s) 252, 357
AsuC2I CCSGG 1 cut(s) 256
AvaI CYCGRG 1 cut(s) 352
AvaII GGWCC 2 cut(s) 252, 357
BanI GGYRCC 1 cut(s) 93
BbsI GAAGAC 1 cut(s) 205
BccI CCATC 1 cut(s) 114
BceAI ACGGC 1 cut(s) 32
BciT130I CCWGG 2 cut(s) 98, 167
BclI TGATCA 1 cut(s) 310
BcnI CCSGG 1 cut(s) 256
BfaI CTAG 1 cut(s) 345
Bme1390I CCNGG 3 cut(s) 98, 167, 256
Bme18I GGWCC 2 cut(s) 252, 357
BmeRI GACNNNNNGTC 1 cut(s) 209
BmeT110I CYCGRG 1 cut(s) 352
BmgT120I GGNCC 2 cut(s) 252, 357
BmiI GGNNCC 1 cut(s) 95
BmrFI CCNGG 3 cut(s) 98, 167, 256
BmsI GCATC 1 cut(s) 264
BpiI GAAGAC 1 cut(s) 205
BplI GAGNNNNNCTC 2 cut(s) 326, 358
BpuMI CCSGG 1 cut(s) 256
BsaBI GATNNNNATC 1 cut(s) 315
BsaHI GRCGYC 1 cut(s) 153
BsaJI CCNNGG 2 cut(s) 248, 268
BsaXI ACNNNNNCTCC 2 cut(s) 60, 90
Bsc4I CCNNNNNNNGG 1 cut(s) 254
Bse8I GATNNNNATC 1 cut(s) 315
BseBI CCWGG 2 cut(s) 98, 167
BseDI CCNNGG 2 cut(s) 248, 268
BseGI GGATG 3 cut(s) 106, 264, 279
BseJI GATNNNNATC 1 cut(s) 315
BseLI CCNNNNNNNGG 1 cut(s) 254
BseMII CTCAG 1 cut(s) 132
BseRI GAGGAG 3 cut(s) 22, 65, 350
BshFI GGCC 1 cut(s) 181
BshNI GGYRCC 1 cut(s) 93
BsiHKCI CYCGRG 1 cut(s) 352
BsiSI CCGG 1 cut(s) 255
BslI CCNNNNNNNGG 1 cut(s) 254
BsnI GGCC 1 cut(s) 181
BsoBI CYCGRG 1 cut(s) 352
Bsp143I GATC 4 cut(s) 121, 243, 310, 316
Bsp19I CCATGG 1 cut(s) 268
BspANI GGCC 1 cut(s) 181
BspCNI CTCAG 1 cut(s) 131
BspLI GGNNCC 1 cut(s) 95
BspPI GGATC 2 cut(s) 238, 324
BspT107I GGYRCC 1 cut(s) 93
BssECI CCNNGG 2 cut(s) 248, 268
BssMI GATC 4 cut(s) 121, 243, 310, 316
BssNI GRCGYC 1 cut(s) 153
BssT1I CCWWGG 1 cut(s) 268
Bst2UI CCWGG 2 cut(s) 98, 167
Bst4CI ACNGT 2 cut(s) 252, 380
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 153
BstC8I GCNNGC 1 cut(s) 179
BstDEI CTNAG 1 cut(s) 118
BstDSI CCRYGG 2 cut(s) 248, 268
BstF5I GGATG 3 cut(s) 106, 264, 279
BstKTI GATC 4 cut(s) 124, 246, 313, 319
BstMBI GATC 4 cut(s) 121, 243, 310, 316
BstMWI GCNNNNNNNGC 1 cut(s) 183
BstNI CCWGG 2 cut(s) 98, 167
BstSCI CCNGG 3 cut(s) 96, 165, 254
BstV2I GAAGAC 1 cut(s) 205
BsuRI GGCC 1 cut(s) 181
BtgI CCRYGG 2 cut(s) 248, 268
BtsCI GGATG 3 cut(s) 106, 264, 279
BtsIMutI CAGTG 1 cut(s) 385
Cac8I GCNNGC 1 cut(s) 179
Cfr13I GGNCC 2 cut(s) 252, 357
CpoI CGGWCCG 1 cut(s) 252
CspI CGGWCCG 1 cut(s) 252
CviAII CATG 1 cut(s) 269
CviJI RGCY 3 cut(s) 139, 181, 351
CviKI_1 RGCY 3 cut(s) 139, 181, 351
DdeI CTNAG 1 cut(s) 118
DpnI GATC 4 cut(s) 123, 245, 312, 318
DpnII GATC 4 cut(s) 121, 243, 310, 316
DriI GACNNNNNGTC 1 cut(s) 209
Eam1104I CTCTTC 1 cut(s) 90
Eam1105I GACNNNNNGTC 1 cut(s) 209
EarI CTCTTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 268
Eco47I GGWCC 2 cut(s) 252, 357
Eco57I CTGAAG 1 cut(s) 119
Eco88I CYCGRG 1 cut(s) 352
EcoO109I RGGNCCY 1 cut(s) 357
EcoRII CCWGG 2 cut(s) 96, 165
EcoT14I CCWWGG 1 cut(s) 268
ErhI CCWWGG 1 cut(s) 268
FaeI CATG 1 cut(s) 272
FaiI YATR 2 cut(s) 242, 270
FatI CATG 1 cut(s) 268
FbaI TGATCA 1 cut(s) 310
FokI GGATG 3 cut(s) 93, 251, 286
FspBI CTAG 1 cut(s) 345
HaeIII GGCC 1 cut(s) 181
HapII CCGG 1 cut(s) 255
Hin1I GRCGYC 1 cut(s) 153
Hin1II CATG 1 cut(s) 272
HincII GTYRAC 1 cut(s) 151
HindII GTYRAC 1 cut(s) 151
HinfI GANTC 4 cut(s) 170, 261, 341, 386
HpaII CCGG 1 cut(s) 255
Hpy166II GTNNAC 1 cut(s) 151
Hpy188I TCNGA 2 cut(s) 121, 403
Hpy188III TCNNGA 2 cut(s) 217, 314
Hpy8I GTNNAC 1 cut(s) 151
Hpy99I CGWCG 4 cut(s) 146, 324, 367, 403
HpyAV CCTTC 4 cut(s) 89, 137, 167, 200
HpyCH4III ACNGT 2 cut(s) 252, 380
HpyCH4IV ACGT 1 cut(s) 153
HpyF10VI GCNNNNNNNGC 1 cut(s) 183
HpyF3I CTNAG 1 cut(s) 118
HpySE526I ACGT 1 cut(s) 153
Hsp92I GRCGYC 1 cut(s) 153
Hsp92II CATG 1 cut(s) 272
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 4 cut(s) 121, 243, 310, 316
LpnPI CCDG 9 cut(s) 29, 83, 110, 152, 163, 179, 202, 268, 299
LweI GCATC 1 cut(s) 264
MaeI CTAG 1 cut(s) 345
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 380
MalI GATC 4 cut(s) 123, 245, 312, 318
MboI GATC 4 cut(s) 121, 243, 310, 316
MboII GAAGA 5 cut(s) 77, 80, 122, 125, 205
MluCI AATT 3 cut(s) 5, 21, 161
MlyI GAGTC 2 cut(s) 335, 395
MmeI TCCRAC 2 cut(s) 312, 381
MspI CCGG 1 cut(s) 255
MspR9I CCNGG 3 cut(s) 98, 167, 256
MvaI CCWGG 2 cut(s) 98, 167
MwoI GCNNNNNNNGC 1 cut(s) 183
NciI CCSGG 1 cut(s) 256
NcoI CCATGG 1 cut(s) 268
NdeII GATC 4 cut(s) 121, 243, 310, 316
NlaIII CATG 1 cut(s) 272
NlaIV GGNNCC 1 cut(s) 95
NmuCI GTSAC 1 cut(s) 380
PaeR7I CTCGAG 1 cut(s) 352
PcsI WCGNNNNNNNCGW 2 cut(s) 150, 359
PfeI GAWTC 2 cut(s) 170, 261
PfoI TCCNGGA 2 cut(s) 165, 254
PleI GAGTC 2 cut(s) 335, 394
PpsI GAGTC 2 cut(s) 335, 394
PpuMI RGGWCCY 1 cut(s) 357
Psp5II RGGWCCY 1 cut(s) 357
Psp6I CCWGG 2 cut(s) 96, 165
PspGI CCWGG 2 cut(s) 96, 165
PspN4I GGNNCC 1 cut(s) 95
PspPI GGNCC 2 cut(s) 252, 357
PspPPI RGGWCCY 1 cut(s) 357
PspXI VCTCGAGB 1 cut(s) 352
Rsr2I CGGWCCG 1 cut(s) 252
RsrII CGGWCCG 1 cut(s) 252
Sau3AI GATC 4 cut(s) 121, 243, 310, 316
Sau96I GGNCC 2 cut(s) 252, 357
SchI GAGTC 2 cut(s) 335, 395
ScrFI CCNGG 3 cut(s) 98, 167, 256
SetI ASST 5 cut(s) 141, 156, 353, 359, 414
SfaNI GCATC 1 cut(s) 264
Sfr274I CTCGAG 1 cut(s) 352
SinI GGWCC 2 cut(s) 252, 357
SlaI CTCGAG 1 cut(s) 352
SmlI CTYRAG 1 cut(s) 352
SmoI CTYRAG 1 cut(s) 352
Sse9I AATT 3 cut(s) 5, 21, 161
SspMI CTAG 1 cut(s) 345
StyD4I CCNGG 3 cut(s) 96, 165, 254
StyI CCWWGG 1 cut(s) 268
TaaI ACNGT 2 cut(s) 252, 380
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 353
TasI AATT 3 cut(s) 5, 21, 161
TfiI GAWTC 2 cut(s) 170, 261
TscAI CASTG 1 cut(s) 385
TseFI GTSAC 1 cut(s) 380
Tsp45I GTSAC 1 cut(s) 380
TspDTI ATGAA 2 cut(s) 17, 253
TspRI CASTG 1 cut(s) 385
VpaK11BI GGWCC 2 cut(s) 252, 357
XhoI CTCGAG 1 cut(s) 352
XspI CTAG 1 cut(s) 345
ZraI GACGTC 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.