RNA binding
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 111 |
| AcoI | YGGCCR | 1 cut(s) | 135 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 131, 163 |
| AluBI | AGCT | 3 cut(s) | 88, 191, 195 |
| AluI | AGCT | 3 cut(s) | 88, 191, 195 |
| AoxI | GGCC | 1 cut(s) | 135 |
| AspLEI | GCGC | 1 cut(s) | 123 |
| AsuNHI | GCTAGC | 1 cut(s) | 191 |
| BalI | TGGCCA | 1 cut(s) | 137 |
| BauI | CACGAG | 1 cut(s) | 46 |
| BfaI | CTAG | 3 cut(s) | 53, 192, 198 |
| BglII | AGATCT | 1 cut(s) | 154 |
| BmsI | GCATC | 1 cut(s) | 49 |
| BmtI | GCTAGC | 1 cut(s) | 195 |
| BshFI | GGCC | 1 cut(s) | 137 |
| BsnI | GGCC | 1 cut(s) | 137 |
| Bsp143I | GATC | 2 cut(s) | 154, 185 |
| BspANI | GGCC | 1 cut(s) | 137 |
| BspOI | GCTAGC | 1 cut(s) | 195 |
| BssMI | GATC | 2 cut(s) | 154, 185 |
| BssSI | CACGAG | 1 cut(s) | 46 |
| Bst2BI | CACGAG | 1 cut(s) | 46 |
| Bst4CI | ACNGT | 1 cut(s) | 79 |
| Bst6I | CTCTTC | 1 cut(s) | 43 |
| BstC8I | GCNNGC | 2 cut(s) | 90, 193 |
| BstHHI | GCGC | 1 cut(s) | 123 |
| BstKTI | GATC | 2 cut(s) | 157, 188 |
| BstMBI | GATC | 2 cut(s) | 154, 185 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 94 |
| BstX2I | RGATCY | 1 cut(s) | 154 |
| BstYI | RGATCY | 1 cut(s) | 154 |
| BsuRI | GGCC | 1 cut(s) | 137 |
| BtgZI | GCGATG | 1 cut(s) | 23 |
| Cac8I | GCNNGC | 2 cut(s) | 90, 193 |
| CfoI | GCGC | 1 cut(s) | 123 |
| CseI | GACGC | 1 cut(s) | 51 |
| CviJI | RGCY | 6 cut(s) | 51, 88, 97, 137, 191, 195 |
| CviKI_1 | RGCY | 6 cut(s) | 51, 88, 97, 137, 191, 195 |
| DpnI | GATC | 2 cut(s) | 156, 187 |
| DpnII | GATC | 2 cut(s) | 154, 185 |
| EaeI | YGGCCR | 1 cut(s) | 135 |
| Eam1104I | CTCTTC | 1 cut(s) | 43 |
| EarI | CTCTTC | 1 cut(s) | 43 |
| FaiI | YATR | 2 cut(s) | 34, 111 |
| FspBI | CTAG | 3 cut(s) | 53, 192, 198 |
| GlaI | GCGC | 1 cut(s) | 122 |
| HaeIII | GGCC | 1 cut(s) | 137 |
| HgaI | GACGC | 1 cut(s) | 51 |
| HhaI | GCGC | 1 cut(s) | 123 |
| Hin6I | GCGC | 1 cut(s) | 121 |
| HinP1I | GCGC | 1 cut(s) | 121 |
| HinfI | GANTC | 1 cut(s) | 127 |
| Hpy188I | TCNGA | 2 cut(s) | 152, 159 |
| Hpy188III | TCNNGA | 1 cut(s) | 46 |
| HpyAV | CCTTC | 1 cut(s) | 52 |
| HpyCH4III | ACNGT | 1 cut(s) | 79 |
| HpyCH4V | TGCA | 1 cut(s) | 92 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 94 |
| HspAI | GCGC | 1 cut(s) | 121 |
| Kzo9I | GATC | 2 cut(s) | 154, 185 |
| LmnI | GCTCC | 1 cut(s) | 85 |
| LweI | GCATC | 1 cut(s) | 49 |
| MaeI | CTAG | 3 cut(s) | 53, 192, 198 |
| MalI | GATC | 2 cut(s) | 156, 187 |
| MboI | GATC | 2 cut(s) | 154, 185 |
| MboII | GAAGA | 1 cut(s) | 30 |
| MflI | RGATCY | 1 cut(s) | 154 |
| MlsI | TGGCCA | 1 cut(s) | 137 |
| MluCI | AATT | 1 cut(s) | 25 |
| MluNI | TGGCCA | 1 cut(s) | 137 |
| Mox20I | TGGCCA | 1 cut(s) | 137 |
| MscI | TGGCCA | 1 cut(s) | 137 |
| MseI | TTAA | 3 cut(s) | 24, 81, 101 |
| Msp20I | TGGCCA | 1 cut(s) | 137 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 94 |
| NdeII | GATC | 2 cut(s) | 154, 185 |
| NheI | GCTAGC | 1 cut(s) | 191 |
| PfeI | GAWTC | 1 cut(s) | 127 |
| PsiI | TTATAA | 1 cut(s) | 111 |
| PsuI | RGATCY | 1 cut(s) | 154 |
| SaqAI | TTAA | 3 cut(s) | 24, 81, 101 |
| Sau3AI | GATC | 2 cut(s) | 154, 185 |
| SetI | ASST | 3 cut(s) | 90, 193, 197 |
| SfaNI | GCATC | 1 cut(s) | 49 |
| SgeI | CNNG | 7 cut(s) | 58, 60, 65, 101, 127, 136, 164 |
| Sse9I | AATT | 1 cut(s) | 25 |
| SspMI | CTAG | 3 cut(s) | 53, 192, 198 |
| TaaI | ACNGT | 1 cut(s) | 79 |
| TasI | AATT | 1 cut(s) | 25 |
| TfiI | GAWTC | 1 cut(s) | 127 |
| Tru1I | TTAA | 3 cut(s) | 24, 81, 101 |
| Tru9I | TTAA | 3 cut(s) | 24, 81, 101 |
| TspDTI | ATGAA | 2 cut(s) | 6, 17 |
| XspI | CTAG | 3 cut(s) | 53, 192, 198 |