RLG00000001977

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr1
OG0000728
Physical Location & Seq
Reverse (-)
23866992 .. 23867504
513 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000001977

Sequence Viewer

Length: 375 bp
ATGTCTACTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCACACGGTCCGGGAGGTTCATCCATGGGATGCCTTGTATTTCGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTTTAGTAGCTCGAGGTCCTCATCAGTTGGTAATAACAGTGACGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGGTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCATAGACCAGCTTGAGGAGGTGTCGCAGTTGGTGAAGATCGAACGCATTGAAACCATGGTTGCCAAGATCGACCAGTTTGCACCTTTTAAACAAGATAAGAGCAAGCGCTCCGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

125

Amino Acids

13.74

Weight (kDa)

4.66

Isoelectric Point (pI)

66.64

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 5
AclWI GGATC 1 cut(s) 126
AfeI AGCGCT 1 cut(s) 362
AfiI CCNNNNNNNGG 1 cut(s) 268
AgsI TTSAA 1 cut(s) 305
AluBI AGCT 3 cut(s) 153, 231, 265
AluI AGCT 3 cut(s) 153, 231, 265
Alw21I GWGCWC 1 cut(s) 233
AlwI GGATC 1 cut(s) 126
Ama87I CYCGRG 1 cut(s) 154
Aor51HI AGCGCT 1 cut(s) 362
AoxI GGCC 1 cut(s) 242
AspLEI GCGC 1 cut(s) 363
AspS9I GGNCC 3 cut(s) 54, 159, 242
AsuC2I CCSGG 1 cut(s) 58
AsuHPI GGTGA 3 cut(s) 221, 230, 298
AvaI CYCGRG 1 cut(s) 154
AvaII GGWCC 2 cut(s) 54, 159
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 233
BcgI CGANNNNNNTGC 2 cut(s) 314, 348
BclI TGATCA 2 cut(s) 45, 112
BcnI CCSGG 1 cut(s) 58
BfoI RGCGCY 1 cut(s) 364
Bme1390I CCNGG 1 cut(s) 58
Bme18I GGWCC 2 cut(s) 54, 159
BmeT110I CYCGRG 1 cut(s) 154
BmgT120I GGNCC 3 cut(s) 54, 159, 242
BmrFI CCNGG 1 cut(s) 58
BmsI GCATC 1 cut(s) 66
BpuEI CTTGAG 1 cut(s) 287
BpuMI CCSGG 1 cut(s) 58
BsaBI GATNNNNATC 1 cut(s) 117
BsaJI CCNNGG 2 cut(s) 70, 309
Bsc4I CCNNNNNNNGG 1 cut(s) 268
Bse1I ACTGG 1 cut(s) 328
Bse8I GATNNNNATC 1 cut(s) 117
BseDI CCNNGG 2 cut(s) 70, 309
BseGI GGATG 2 cut(s) 66, 81
BseJI GATNNNNATC 1 cut(s) 117
BseLI CCNNNNNNNGG 1 cut(s) 268
BseNI ACTGG 1 cut(s) 328
BseRI GAGGAG 3 cut(s) 152, 227, 284
BshFI GGCC 1 cut(s) 244
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 1 cut(s) 154
BsiSI CCGG 1 cut(s) 57
BslI CCNNNNNNNGG 1 cut(s) 268
BsnI GGCC 1 cut(s) 244
BsoBI CYCGRG 1 cut(s) 154
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 6 cut(s) 45, 90, 112, 118, 291, 321
Bsp19I CCATGG 2 cut(s) 70, 309
BspANI GGCC 1 cut(s) 244
BspPI GGATC 1 cut(s) 126
BsrI ACTGG 1 cut(s) 328
BssECI CCNNGG 2 cut(s) 70, 309
BssMI GATC 6 cut(s) 45, 90, 112, 118, 291, 321
BssT1I CCWWGG 2 cut(s) 70, 309
Bst4CI ACNGT 2 cut(s) 54, 182
BstC8I GCNNGC 1 cut(s) 359
BstDSI CCRYGG 2 cut(s) 70, 309
BstF5I GGATG 2 cut(s) 66, 81
BstH2I RGCGCY 1 cut(s) 364
BstHHI GCGC 1 cut(s) 363
BstKTI GATC 6 cut(s) 48, 93, 115, 121, 294, 324
BstMBI GATC 6 cut(s) 45, 90, 112, 118, 291, 321
BstSCI CCNGG 1 cut(s) 56
BsuRI GGCC 1 cut(s) 244
BtgI CCRYGG 2 cut(s) 70, 309
BtsCI GGATG 2 cut(s) 66, 81
BtsIMutI CAGTG 1 cut(s) 187
Cac8I GCNNGC 1 cut(s) 359
CfoI GCGC 1 cut(s) 363
Cfr13I GGNCC 3 cut(s) 54, 159, 242
CpoI CGGWCCG 1 cut(s) 54
CspI CGGWCCG 1 cut(s) 54
CviAII CATG 2 cut(s) 71, 310
CviJI RGCY 4 cut(s) 153, 231, 244, 265
CviKI_1 RGCY 4 cut(s) 153, 231, 244, 265
DpnI GATC 6 cut(s) 47, 92, 114, 120, 293, 323
DpnII GATC 6 cut(s) 45, 90, 112, 118, 291, 321
DraI TTTAAA 2 cut(s) 238, 343
Ecl136II GAGCTC 1 cut(s) 231
Eco130I CCWWGG 2 cut(s) 70, 309
Eco24I GRGCYC 1 cut(s) 233
Eco47I GGWCC 2 cut(s) 54, 159
Eco47III AGCGCT 1 cut(s) 362
Eco53kI GAGCTC 1 cut(s) 231
Eco88I CYCGRG 1 cut(s) 154
EcoICRI GAGCTC 1 cut(s) 231
EcoO109I RGGNCCY 2 cut(s) 159, 242
EcoT14I CCWWGG 2 cut(s) 70, 309
EcoT38I GRGCYC 1 cut(s) 233
ErhI CCWWGG 2 cut(s) 70, 309
FaeI CATG 2 cut(s) 74, 313
FaiI YATR 4 cut(s) 44, 72, 257, 311
FatI CATG 2 cut(s) 70, 309
FbaI TGATCA 2 cut(s) 45, 112
FblI GTMKAC 1 cut(s) 5
FokI GGATG 2 cut(s) 53, 88
FriOI GRGCYC 1 cut(s) 233
GlaI GCGC 1 cut(s) 362
HaeII RGCGCY 1 cut(s) 364
HaeIII GGCC 1 cut(s) 244
HapII CCGG 1 cut(s) 57
HhaI GCGC 1 cut(s) 363
Hin1II CATG 2 cut(s) 74, 313
Hin6I GCGC 1 cut(s) 361
HinP1I GCGC 1 cut(s) 361
HinfI GANTC 1 cut(s) 188
HpaII CCGG 1 cut(s) 57
HphI GGTGA 3 cut(s) 221, 230, 298
Hpy166II GTNNAC 1 cut(s) 6
Hpy188I TCNGA 3 cut(s) 205, 228, 367
Hpy188III TCNNGA 1 cut(s) 116
Hpy8I GTNNAC 1 cut(s) 6
Hpy99I CGWCG 2 cut(s) 126, 205
HpyCH4III ACNGT 2 cut(s) 54, 182
HpyCH4V TGCA 1 cut(s) 335
Hsp92II CATG 2 cut(s) 74, 313
HspAI GCGC 1 cut(s) 361
Ksp22I TGATCA 2 cut(s) 45, 112
Kzo9I GATC 6 cut(s) 45, 90, 112, 118, 291, 321
LmnI GCTCC 1 cut(s) 368
LpnPI CCDG 4 cut(s) 70, 101, 275, 341
LweI GCATC 1 cut(s) 66
MaeIII GTNAC 1 cut(s) 182
MalI GATC 6 cut(s) 47, 92, 114, 120, 293, 323
MboI GATC 6 cut(s) 45, 90, 112, 118, 291, 321
MboII GAAGA 1 cut(s) 301
MhlI GDGCHC 1 cut(s) 233
MlyI GAGTC 1 cut(s) 197
MmeI TCCRAC 2 cut(s) 114, 183
MseI TTAA 2 cut(s) 237, 342
MspI CCGG 1 cut(s) 57
MspR9I CCNGG 1 cut(s) 58
NciI CCSGG 1 cut(s) 58
NcoI CCATGG 2 cut(s) 70, 309
NdeII GATC 6 cut(s) 45, 90, 112, 118, 291, 321
NlaIII CATG 2 cut(s) 74, 313
NmuCI GTSAC 1 cut(s) 182
PaeR7I CTCGAG 1 cut(s) 154
PfoI TCCNGGA 1 cut(s) 56
PleI GAGTC 1 cut(s) 196
PpsI GAGTC 1 cut(s) 196
PpuMI RGGWCCY 1 cut(s) 159
Psp124BI GAGCTC 1 cut(s) 233
Psp5II RGGWCCY 1 cut(s) 159
PspPI GGNCC 3 cut(s) 54, 159, 242
PspPPI RGGWCCY 1 cut(s) 159
PspXI VCTCGAGB 1 cut(s) 154
Rsr2I CGGWCCG 1 cut(s) 54
RsrII CGGWCCG 1 cut(s) 54
SacI GAGCTC 1 cut(s) 233
SaqAI TTAA 2 cut(s) 237, 342
Sau3AI GATC 6 cut(s) 45, 90, 112, 118, 291, 321
Sau96I GGNCC 3 cut(s) 54, 159, 242
SchI GAGTC 1 cut(s) 197
ScrFI CCNGG 1 cut(s) 58
SduI GDGCHC 1 cut(s) 233
SetI ASST 8 cut(s) 65, 155, 161, 225, 233, 267, 276, 340
SfaNI GCATC 1 cut(s) 66
Sfr274I CTCGAG 1 cut(s) 154
SinI GGWCC 2 cut(s) 54, 159
SlaI CTCGAG 1 cut(s) 154
SmlI CTYRAG 2 cut(s) 154, 266
SmoI CTYRAG 2 cut(s) 154, 266
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 1 cut(s) 56
StyI CCWWGG 2 cut(s) 70, 309
TaaI ACNGT 2 cut(s) 54, 182
TaqI TCGA 4 cut(s) 89, 155, 294, 324
Tru1I TTAA 2 cut(s) 237, 342
Tru9I TTAA 2 cut(s) 237, 342
TscAI CASTG 1 cut(s) 187
TseFI GTSAC 1 cut(s) 182
Tsp45I GTSAC 1 cut(s) 182
TspDTI ATGAA 1 cut(s) 55
TspRI CASTG 1 cut(s) 187
VpaK11BI GGWCC 2 cut(s) 54, 159
XhoI CTCGAG 1 cut(s) 154
XmiI GTMKAC 1 cut(s) 5
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.