RNA binding
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| MMR_HSR1 | PF01926 | 435 - 553 | 1.5e-19 | 50S ribosome-binding GTPase |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 438 |
| AccB1I | GGYRCC | 1 cut(s) | 265 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 1368 |
| AccBSI | CCGCTC | 1 cut(s) | 1216 |
| AccI | GTMKAC | 2 cut(s) | 1123, 1780 |
| AccII | CGCG | 1 cut(s) | 637 |
| AccIII | TCCGGA | 1 cut(s) | 1300 |
| AciI | CCGC | 2 cut(s) | 1216, 1667 |
| AclI | AACGTT | 3 cut(s) | 535, 685, 715 |
| AclWI | GGATC | 4 cut(s) | 904, 941, 1441, 1605 |
| AcsI | RAATTY | 1 cut(s) | 61 |
| AcuI | CTGAAG | 3 cut(s) | 117, 198, 812 |
| AdeI | CACNNNGTG | 1 cut(s) | 1694 |
| AfaI | GTAC | 1 cut(s) | 1154 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 1368, 1466 |
| AgsI | TTSAA | 5 cut(s) | 34, 75, 310, 1426, 1709 |
| AjiI | CACGTC | 1 cut(s) | 356 |
| AjnI | CCWGG | 2 cut(s) | 1396, 1459 |
| AluBI | AGCT | 9 cut(s) | 239, 1037, 1138, 1165, 1203, 1441, 1513, 1761, 1775 |
| AluI | AGCT | 9 cut(s) | 239, 1037, 1138, 1165, 1203, 1441, 1513, 1761, 1775 |
| Alw21I | GWGCWC | 1 cut(s) | 1763 |
| AlwI | GGATC | 4 cut(s) | 904, 941, 1441, 1605 |
| Ama87I | CYCGRG | 2 cut(s) | 1762, 1815 |
| Aor13HI | TCCGGA | 1 cut(s) | 1300 |
| ApeKI | GCWGC | 4 cut(s) | 236, 621, 1259, 1262 |
| ApoI | RAATTY | 1 cut(s) | 61 |
| AseI | ATTAAT | 2 cut(s) | 462, 1416 |
| AspA2I | CCTAGG | 1 cut(s) | 1592 |
| AspS9I | GGNCC | 1 cut(s) | 1738 |
| AsuII | TTCGAA | 1 cut(s) | 491 |
| AvaI | CYCGRG | 2 cut(s) | 1762, 1815 |
| AvaII | GGWCC | 1 cut(s) | 1738 |
| AvrII | CCTAGG | 1 cut(s) | 1592 |
| AxyI | CCTNAGG | 1 cut(s) | 696 |
| BanI | GGYRCC | 1 cut(s) | 265 |
| BanII | GRGCYC | 1 cut(s) | 1763 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 334, 366 |
| Bbv12I | GWGCWC | 1 cut(s) | 1763 |
| BbvCI | CCTCAGC | 1 cut(s) | 1139 |
| BbvI | GCAGC | 4 cut(s) | 248, 633, 1246, 1249 |
| BccI | CCATC | 6 cut(s) | 500, 745, 764, 905, 1090, 1612 |
| BceAI | ACGGC | 1 cut(s) | 1677 |
| BciT130I | CCWGG | 2 cut(s) | 1398, 1461 |
| BfaI | CTAG | 3 cut(s) | 908, 944, 1593 |
| BfmI | CTRYAG | 2 cut(s) | 6, 337 |
| BglII | AGATCT | 4 cut(s) | 344, 626, 1625, 1644 |
| BisI | GCNGC | 4 cut(s) | 237, 622, 1260, 1263 |
| BlnI | CCTAGG | 1 cut(s) | 1592 |
| BlsI | GCNGC | 4 cut(s) | 238, 623, 1261, 1264 |
| Bme1390I | CCNGG | 2 cut(s) | 1398, 1461 |
| Bme18I | GGWCC | 1 cut(s) | 1738 |
| BmeT110I | CYCGRG | 2 cut(s) | 1762, 1815 |
| BmgBI | CACGTC | 1 cut(s) | 356 |
| BmgT120I | GGNCC | 1 cut(s) | 1738 |
| BmiI | GGNNCC | 1 cut(s) | 267 |
| BmrFI | CCNGG | 2 cut(s) | 1398, 1461 |
| BmsI | GCATC | 3 cut(s) | 223, 1489, 1654 |
| BpmI | CTGGAG | 1 cut(s) | 1791 |
| Bpu10I | CCTNAGC | 1 cut(s) | 1139 |
| Bpu14I | TTCGAA | 1 cut(s) | 491 |
| BpuEI | CTTGAG | 1 cut(s) | 1703 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 546, 1592 |
| BsaWI | WCCGGW | 1 cut(s) | 1300 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 1368, 1466 |
| Bse1I | ACTGG | 1 cut(s) | 1774 |
| Bse21I | CCTNAGG | 1 cut(s) | 696 |
| Bse3DI | GCAATG | 3 cut(s) | 457, 957, 1704 |
| BseAI | TCCGGA | 1 cut(s) | 1300 |
| BseBI | CCWGG | 2 cut(s) | 1398, 1461 |
| BseDI | CCNNGG | 3 cut(s) | 414, 546, 1592 |
| BseGI | GGATG | 4 cut(s) | 745, 895, 1504, 1669 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 1368, 1466 |
| BseMI | GCAATG | 3 cut(s) | 457, 957, 1704 |
| BseMII | CTCAG | 5 cut(s) | 1029, 1130, 1152, 1218, 1421 |
| BseNI | ACTGG | 1 cut(s) | 1774 |
| BseRI | GAGGAG | 3 cut(s) | 275, 1156, 1523 |
| BseXI | GCAGC | 4 cut(s) | 248, 633, 1246, 1249 |
| BsgI | GTGCAG | 1 cut(s) | 1155 |
| Bsh1236I | CGCG | 1 cut(s) | 637 |
| BshNI | GGYRCC | 1 cut(s) | 265 |
| BsiHKAI | GWGCWC | 1 cut(s) | 1763 |
| BsiHKCI | CYCGRG | 2 cut(s) | 1762, 1815 |
| BsiSI | CCGG | 1 cut(s) | 1301 |
| BslFI | GGGAC | 2 cut(s) | 468, 602 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 1368, 1466 |
| BsmFI | GGGAC | 2 cut(s) | 468, 602 |
| BsmI | GAATGC | 3 cut(s) | 523, 942, 1057 |
| BsoBI | CYCGRG | 2 cut(s) | 1762, 1815 |
| Bsp119I | TTCGAA | 1 cut(s) | 491 |
| Bsp1286I | GDGCHC | 1 cut(s) | 1763 |
| Bsp13I | TCCGGA | 1 cut(s) | 1300 |
| BspACI | CCGC | 2 cut(s) | 1216, 1667 |
| BspCNI | CTCAG | 5 cut(s) | 1030, 1131, 1153, 1217, 1420 |
| BspEI | TCCGGA | 1 cut(s) | 1300 |
| BspFNI | CGCG | 1 cut(s) | 637 |
| BspLI | GGNNCC | 1 cut(s) | 267 |
| BspMAI | CTGCAG | 1 cut(s) | 10 |
| BspPI | GGATC | 4 cut(s) | 904, 941, 1441, 1605 |
| BspT104I | TTCGAA | 1 cut(s) | 491 |
| BspT107I | GGYRCC | 1 cut(s) | 265 |
| BsrBI | CCGCTC | 1 cut(s) | 1216 |
| BsrDI | GCAATG | 3 cut(s) | 457, 957, 1704 |
| BsrI | ACTGG | 1 cut(s) | 1774 |
| BssECI | CCNNGG | 3 cut(s) | 414, 546, 1592 |
| BssNAI | GTATAC | 1 cut(s) | 1781 |
| BssT1I | CCWWGG | 2 cut(s) | 414, 1592 |
| Bst1107I | GTATAC | 1 cut(s) | 1781 |
| Bst2UI | CCWGG | 2 cut(s) | 1398, 1461 |
| Bst4CI | ACNGT | 6 cut(s) | 254, 341, 405, 550, 856, 1798 |
| Bst6I | CTCTTC | 5 cut(s) | 174, 206, 849, 1482, 1704 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 1694, 1811 |
| BstBI | TTCGAA | 1 cut(s) | 491 |
| BstC8I | GCNNGC | 2 cut(s) | 1690, 1803 |
| BstDEI | CTNAG | 7 cut(s) | 66, 696, 1038, 1139, 1161, 1204, 1407 |
| BstDSI | CCRYGG | 1 cut(s) | 546 |
| BstF5I | GGATG | 4 cut(s) | 745, 895, 1504, 1669 |
| BstFNI | CGCG | 1 cut(s) | 637 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 1694, 1811, 1820 |
| BstNI | CCWGG | 2 cut(s) | 1398, 1461 |
| BstSCI | CCNGG | 2 cut(s) | 1396, 1459 |
| BstSFI | CTRYAG | 2 cut(s) | 6, 337 |
| BstUI | CGCG | 1 cut(s) | 637 |
| BstV1I | GCAGC | 4 cut(s) | 248, 633, 1246, 1249 |
| BstX2I | RGATCY | 5 cut(s) | 344, 626, 946, 1625, 1644 |
| BstYI | RGATCY | 5 cut(s) | 344, 626, 946, 1625, 1644 |
| BstZ17I | GTATAC | 1 cut(s) | 1781 |
| Bsu36I | CCTNAGG | 1 cut(s) | 696 |
| BtgI | CCRYGG | 1 cut(s) | 546 |
| BtrI | CACGTC | 1 cut(s) | 356 |
| BtsCI | GGATG | 4 cut(s) | 745, 895, 1504, 1669 |
| BtsI | GCAGTG | 1 cut(s) | 666 |
| BtsIMutI | CAGTG | 4 cut(s) | 666, 788, 1158, 1803 |
| Cac8I | GCNNGC | 2 cut(s) | 1690, 1803 |
| Cfr13I | GGNCC | 1 cut(s) | 1738 |
| CseI | GACGC | 3 cut(s) | 599, 626, 1134 |
| Csp6I | GTAC | 1 cut(s) | 1153 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 837, 872, 1522, 1557 |
| CviAII | CATG | 2 cut(s) | 651, 870 |
| CviQI | GTAC | 1 cut(s) | 1153 |
| DdeI | CTNAG | 7 cut(s) | 66, 696, 1038, 1139, 1161, 1204, 1407 |
| DraIII | CACNNNGTG | 1 cut(s) | 1694 |
| Eam1104I | CTCTTC | 5 cut(s) | 174, 206, 849, 1482, 1704 |
| EarI | CTCTTC | 5 cut(s) | 174, 206, 849, 1482, 1704 |
| Ecl136II | GAGCTC | 1 cut(s) | 1761 |
| Eco130I | CCWWGG | 2 cut(s) | 414, 1592 |
| Eco24I | GRGCYC | 1 cut(s) | 1763 |
| Eco32I | GATATC | 2 cut(s) | 664, 1044 |
| Eco47I | GGWCC | 1 cut(s) | 1738 |
| Eco53kI | GAGCTC | 1 cut(s) | 1761 |
| Eco57I | CTGAAG | 3 cut(s) | 117, 198, 812 |
| Eco81I | CCTNAGG | 1 cut(s) | 696 |
| Eco88I | CYCGRG | 2 cut(s) | 1762, 1815 |
| EcoICRI | GAGCTC | 1 cut(s) | 1761 |
| EcoRII | CCWGG | 2 cut(s) | 1396, 1459 |
| EcoRV | GATATC | 2 cut(s) | 664, 1044 |
| EcoT14I | CCWWGG | 2 cut(s) | 414, 1592 |
| EcoT38I | GRGCYC | 1 cut(s) | 1763 |
| ErhI | CCWWGG | 2 cut(s) | 414, 1592 |
| FaeI | CATG | 2 cut(s) | 654, 873 |
| FaqI | GGGAC | 2 cut(s) | 468, 602 |
| FatI | CATG | 2 cut(s) | 650, 869 |
| FauNDI | CATATG | 1 cut(s) | 952 |
| FblI | GTMKAC | 2 cut(s) | 1123, 1780 |
| Fnu4HI | GCNGC | 4 cut(s) | 237, 622, 1260, 1263 |
| FokI | GGATG | 4 cut(s) | 752, 902, 1511, 1676 |
| FriOI | GRGCYC | 1 cut(s) | 1763 |
| Fsp4HI | GCNGC | 4 cut(s) | 237, 622, 1260, 1263 |
| FspBI | CTAG | 3 cut(s) | 908, 944, 1593 |
| GluI | GCNGC | 4 cut(s) | 237, 622, 1260, 1263 |
| GsuI | CTGGAG | 1 cut(s) | 1791 |
| HapII | CCGG | 1 cut(s) | 1301 |
| HgaI | GACGC | 3 cut(s) | 599, 626, 1134 |
| Hin1II | CATG | 2 cut(s) | 654, 873 |
| HincII | GTYRAC | 1 cut(s) | 250 |
| HindII | GTYRAC | 1 cut(s) | 250 |
| HinfI | GANTC | 5 cut(s) | 187, 216, 301, 500, 755 |
| HpaI | GTTAAC | 1 cut(s) | 250 |
| HpaII | CCGG | 1 cut(s) | 1301 |
| Hpy166II | GTNNAC | 6 cut(s) | 250, 568, 1124, 1604, 1781, 1790 |
| Hpy188III | TCNNGA | 6 cut(s) | 230, 1292, 1301, 1601, 1675, 1764 |
| Hpy8I | GTNNAC | 6 cut(s) | 250, 568, 1124, 1604, 1781, 1790 |
| HpyAV | CCTTC | 9 cut(s) | 85, 201, 271, 360, 642, 887, 1006, 1314, 1513 |
| HpyCH4III | ACNGT | 6 cut(s) | 254, 341, 405, 550, 856, 1798 |
| HpyCH4IV | ACGT | 4 cut(s) | 355, 535, 685, 715 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 1694, 1811, 1820 |
| HpyF3I | CTNAG | 7 cut(s) | 66, 696, 1038, 1139, 1161, 1204, 1407 |
| HpySE526I | ACGT | 4 cut(s) | 355, 535, 685, 715 |
| Hsp92II | CATG | 2 cut(s) | 654, 873 |
| Kpn2I | TCCGGA | 1 cut(s) | 1300 |
| KspAI | GTTAAC | 1 cut(s) | 250 |
| LmnI | GCTCC | 2 cut(s) | 1510, 1772 |
| Lsp1109I | GCAGC | 4 cut(s) | 248, 633, 1246, 1249 |
| LweI | GCATC | 3 cut(s) | 223, 1489, 1654 |
| MaeI | CTAG | 3 cut(s) | 908, 944, 1593 |
| MaeII | ACGT | 4 cut(s) | 355, 535, 685, 715 |
| MaeIII | GTNAC | 1 cut(s) | 362 |
| MbiI | CCGCTC | 1 cut(s) | 1216 |
| MfeI | CAATTG | 1 cut(s) | 305 |
| MflI | RGATCY | 5 cut(s) | 344, 626, 946, 1625, 1644 |
| MhlI | GDGCHC | 1 cut(s) | 1763 |
| MlyI | GAGTC | 1 cut(s) | 196 |
| MmeI | TCCRAC | 4 cut(s) | 37, 758, 1096, 1765 |
| MroI | TCCGGA | 1 cut(s) | 1300 |
| MspI | CCGG | 1 cut(s) | 1301 |
| MspR9I | CCNGG | 2 cut(s) | 1398, 1461 |
| MunI | CAATTG | 1 cut(s) | 305 |
| Mva1269I | GAATGC | 3 cut(s) | 523, 942, 1057 |
| MvaI | CCWGG | 2 cut(s) | 1398, 1461 |
| MvnI | CGCG | 1 cut(s) | 637 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 1694, 1811, 1820 |
| NdeI | CATATG | 1 cut(s) | 952 |
| NlaIII | CATG | 2 cut(s) | 654, 873 |
| NlaIV | GGNNCC | 1 cut(s) | 267 |
| NspV | TTCGAA | 1 cut(s) | 491 |
| PaeR7I | CTCGAG | 2 cut(s) | 1762, 1815 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 1789 |
| PctI | GAATGC | 3 cut(s) | 523, 942, 1057 |
| PfeI | GAWTC | 4 cut(s) | 216, 301, 500, 755 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 1368 |
| PkrI | GCNGC | 4 cut(s) | 238, 623, 1261, 1264 |
| PleI | GAGTC | 1 cut(s) | 195 |
| PpsI | GAGTC | 1 cut(s) | 195 |
| PshBI | ATTAAT | 2 cut(s) | 462, 1416 |
| PsiI | TTATAA | 1 cut(s) | 438 |
| Psp124BI | GAGCTC | 1 cut(s) | 1763 |
| Psp1406I | AACGTT | 3 cut(s) | 535, 685, 715 |
| Psp6I | CCWGG | 2 cut(s) | 1396, 1459 |
| PspGI | CCWGG | 2 cut(s) | 1396, 1459 |
| PspN4I | GGNNCC | 1 cut(s) | 267 |
| PspPI | GGNCC | 1 cut(s) | 1738 |
| PspXI | VCTCGAGB | 1 cut(s) | 1815 |
| PstI | CTGCAG | 1 cut(s) | 10 |
| PsuI | RGATCY | 5 cut(s) | 344, 626, 946, 1625, 1644 |
| RsaI | GTAC | 1 cut(s) | 1154 |
| RsaNI | GTAC | 1 cut(s) | 1153 |
| SacI | GAGCTC | 1 cut(s) | 1763 |
| SatI | GCNGC | 4 cut(s) | 237, 622, 1260, 1263 |
| Sau96I | GGNCC | 1 cut(s) | 1738 |
| SchI | GAGTC | 1 cut(s) | 196 |
| ScrFI | CCNGG | 2 cut(s) | 1398, 1461 |
| SduI | GDGCHC | 1 cut(s) | 1763 |
| SfaNI | GCATC | 3 cut(s) | 223, 1489, 1654 |
| SfcI | CTRYAG | 2 cut(s) | 6, 337 |
| Sfr274I | CTCGAG | 2 cut(s) | 1762, 1815 |
| SfuI | TTCGAA | 1 cut(s) | 491 |
| SinI | GGWCC | 1 cut(s) | 1738 |
| SlaI | CTCGAG | 2 cut(s) | 1762, 1815 |
| SmlI | CTYRAG | 3 cut(s) | 1718, 1762, 1815 |
| SmoI | CTYRAG | 3 cut(s) | 1718, 1762, 1815 |
| SsiI | CCGC | 2 cut(s) | 1216, 1667 |
| SspMI | CTAG | 3 cut(s) | 908, 944, 1593 |
| SstI | GAGCTC | 1 cut(s) | 1763 |
| StyD4I | CCNGG | 2 cut(s) | 1396, 1459 |
| StyI | CCWWGG | 2 cut(s) | 414, 1592 |
| TaaI | ACNGT | 6 cut(s) | 254, 341, 405, 550, 856, 1798 |
| TaiI | ACGT | 4 cut(s) | 358, 538, 688, 718 |
| TaqI | TCGA | 6 cut(s) | 146, 229, 491, 1101, 1763, 1816 |
| TfiI | GAWTC | 4 cut(s) | 216, 301, 500, 755 |
| TscAI | CASTG | 4 cut(s) | 673, 795, 1165, 1803 |
| TseI | GCWGC | 4 cut(s) | 236, 621, 1259, 1262 |
| TspDTI | ATGAA | 8 cut(s) | 158, 468, 588, 624, 906, 1011, 1263, 1601 |
| TspRI | CASTG | 4 cut(s) | 673, 795, 1165, 1803 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 1368 |
| VpaK11BI | GGWCC | 1 cut(s) | 1738 |
| VspI | ATTAAT | 2 cut(s) | 462, 1416 |
| XapI | RAATTY | 1 cut(s) | 61 |
| XhoI | CTCGAG | 2 cut(s) | 1762, 1815 |
| XmaJI | CCTAGG | 1 cut(s) | 1592 |
| XmiI | GTMKAC | 2 cut(s) | 1123, 1780 |
| XspI | CTAG | 3 cut(s) | 908, 944, 1593 |