Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr4

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

7366109 .. 7368217

Gene Structure 2109 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000016531

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTCTATTGCTTTGGACAGAAATGGGAATAGTGGGAATGGTATGATCCCACGGTCCGGGAGGTTCATCCATGGGATGCCTTGTATTTCGATCTACGACACAAAAGGGTTTGATCAGGATCGTCGTTTGGAGTTGGAGGAGGACTCTAGTAGCTCGAGGTCGTCGTCGGTTGGTAATAACAGTGACGAGTCTAATGGGTCGTCGGAGGGTGAGGAGGAGGGTGAGGTTCAGAGCTCGTTTAAAGGGCCTTTGGACACCATGGACCAGCTTGAGGAGGTTTTGCCTGTCAAGAGAGGAATATCTAAGTTCTATAATGGTAAATCAAAGTCTTTCACGAGCTTAGCAGATGCATCATCTGTTTCTACTGTTAAGGAGCTTGCGAAGCCAGTAAATCCTTATAACAAGAAGCGCAAGAATCTGTTGGCCAATAGTTATTTCCGGGATCTGAAGAATAGTGGTGGTGGGATAAGGAGATCAGCTAGCTCTAGTCCAGGCATATATCTTGCTGGGGAGACTCTTAGCGGCTCTAACAGTGGGGACGATTCCAAGTCTATTTCACCTTCACCCTTTTCTTGTCGTCCTCCTCTACATCCGCAGCGTAAAAGATCACCTGGCAATGGGTCATCAGATTCTTCACCGCCTTCTCCTCCTCAACAAAATGTTCCTTGGCGATCATTCTCACTGTCTGATCTACAATGCGCCGCTGCACCAACAGCCAACATTACTGGCTTTGAAATTTGTAACGGGGACATGGACAACAATCCACATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

27.42

Weight (kDa)

6.33

Isoelectric Point (pI)

70.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	399
AciI	CCGC	4 cut(s)	522, 593, 638, 702
AclWI	GGATC	3 cut(s)	40, 126, 450
AcoI	YGGCCR	1 cut(s)	423
AcsI	RAATTY	1 cut(s)	735
AcuI	CTGAAG	1 cut(s)	467
AfiI	CCNNNNNNNGG	3 cut(s)	56, 271, 617
AgsI	TTSAA	1 cut(s)	734
AjnI	CCWGG	2 cut(s)	490, 610
AjuI	GAANNNNNNNTTGG	2 cut(s)	419, 451
AluBI	AGCT	7 cut(s)	153, 234, 268, 339, 376, 479, 483
AluI	AGCT	7 cut(s)	153, 234, 268, 339, 376, 479, 483
Alw21I	GWGCWC	1 cut(s)	236
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	3 cut(s)	40, 126, 450
Ama87I	CYCGRG	1 cut(s)	154
AoxI	GGCC	2 cut(s)	245, 423
ApeKI	GCWGC	2 cut(s)	595, 704
ApoI	RAATTY	1 cut(s)	735
AspLEI	GCGC	2 cut(s)	411, 701
AspS9I	GGNCC	3 cut(s)	54, 245, 262
AsuC2I	CCSGG	2 cut(s)	58, 440
AsuHPI	GGTGA	6 cut(s)	221, 233, 549, 555, 600, 627
AsuNHI	GCTAGC	1 cut(s)	479
AvaI	CYCGRG	1 cut(s)	154
AvaII	GGWCC	2 cut(s)	54, 262
BalI	TGGCCA	1 cut(s)	425
BanII	GRGCYC	1 cut(s)	236
BauI	CACGAG	1 cut(s)	334
Bbv12I	GWGCWC	1 cut(s)	236
BbvI	GCAGC	2 cut(s)	607, 691
BciT130I	CCWGG	2 cut(s)	492, 612
BclI	TGATCA	1 cut(s)	112
BcnI	CCSGG	2 cut(s)	58, 440
BcoDI	GTCTC	1 cut(s)	506
BfaI	CTAG	3 cut(s)	147, 480, 486
BisI	GCNGC	4 cut(s)	523, 596, 702, 705
BlpI	GCTNAGC	1 cut(s)	340
BlsI	GCNGC	4 cut(s)	524, 597, 703, 706
Bme1390I	CCNGG	4 cut(s)	58, 440, 492, 612
Bme18I	GGWCC	2 cut(s)	54, 262
BmeT110I	CYCGRG	1 cut(s)	154
BmgT120I	GGNCC	3 cut(s)	54, 245, 262
BmrFI	CCNGG	4 cut(s)	58, 440, 492, 612
BmsI	GCATC	3 cut(s)	66, 337, 359
BmtI	GCTAGC	1 cut(s)	483
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
Bpu1102I	GCTNAGC	1 cut(s)	340
BpuEI	CTTGAG	1 cut(s)	290
BpuMI	CCSGG	2 cut(s)	58, 440
BsaBI	GATNNNNATC	1 cut(s)	117
BsaJI	CCNNGG	4 cut(s)	50, 70, 258, 665
Bsc4I	CCNNNNNNNGG	3 cut(s)	56, 271, 617
Bse1I	ACTGG	2 cut(s)	386, 730
Bse3DI	GCAATG	1 cut(s)	622
Bse8I	GATNNNNATC	1 cut(s)	117
BseBI	CCWGG	2 cut(s)	492, 612
BseDI	CCNNGG	4 cut(s)	50, 70, 258, 665
BseGI	GGATG	3 cut(s)	66, 81, 589
BseJI	GATNNNNATC	1 cut(s)	117
BseLI	CCNNNNNNNGG	3 cut(s)	56, 271, 617
BseMI	GCAATG	1 cut(s)	622
BseNI	ACTGG	2 cut(s)	386, 730
BseRI	GAGGAG	7 cut(s)	152, 227, 230, 287, 573, 636, 639
BseXI	GCAGC	2 cut(s)	607, 691
BseYI	CCCAGC	1 cut(s)	506
BsgI	GTGCAG	1 cut(s)	690
BshFI	GGCC	2 cut(s)	247, 425
BsiHKAI	GWGCWC	1 cut(s)	236
BsiHKCI	CYCGRG	1 cut(s)	154
BsiSI	CCGG	2 cut(s)	57, 439
BslFI	GGGAC	2 cut(s)	551, 761
BslI	CCNNNNNNNGG	3 cut(s)	56, 271, 617
BsmAI	GTCTC	1 cut(s)	506
BsmFI	GGGAC	2 cut(s)	551, 761
BsnI	GGCC	2 cut(s)	247, 425
BsoBI	CYCGRG	1 cut(s)	154
Bsp1286I	GDGCHC	1 cut(s)	236
Bsp143I	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
Bsp1720I	GCTNAGC	1 cut(s)	340
Bsp19I	CCATGG	2 cut(s)	70, 258
BspACI	CCGC	4 cut(s)	522, 593, 638, 702
BspANI	GGCC	2 cut(s)	247, 425
BspOI	GCTAGC	1 cut(s)	483
BspPI	GGATC	3 cut(s)	40, 126, 450
BsrDI	GCAATG	1 cut(s)	622
BsrI	ACTGG	2 cut(s)	386, 730
BssECI	CCNNGG	4 cut(s)	50, 70, 258, 665
BssMI	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
BssSI	CACGAG	1 cut(s)	334
BssT1I	CCWWGG	3 cut(s)	70, 258, 665
Bst2BI	CACGAG	1 cut(s)	334
Bst2UI	CCWGG	2 cut(s)	492, 612
Bst4CI	ACNGT	5 cut(s)	54, 182, 367, 533, 684
BstC8I	GCNNGC	2 cut(s)	378, 481
BstDEI	CTNAG	3 cut(s)	303, 340, 518
BstDSI	CCRYGG	3 cut(s)	50, 70, 258
BstF5I	GGATG	3 cut(s)	66, 81, 589
BstHHI	GCGC	2 cut(s)	411, 701
BstKTI	GATC	9 cut(s)	48, 93, 115, 121, 445, 476, 608, 674, 691
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
BstMWI	GCNNNNNNNGC	2 cut(s)	382, 713
BstNI	CCWGG	2 cut(s)	492, 612
BstSCI	CCNGG	4 cut(s)	56, 438, 490, 610
BstV1I	GCAGC	2 cut(s)	607, 691
BstX2I	RGATCY	1 cut(s)	442
BstYI	RGATCY	1 cut(s)	442
BsuRI	GGCC	2 cut(s)	247, 425
BtgI	CCRYGG	3 cut(s)	50, 70, 258
BtsCI	GGATG	3 cut(s)	66, 81, 589
BtsIMutI	CAGTG	3 cut(s)	187, 538, 680
Cac8I	GCNNGC	2 cut(s)	378, 481
CfoI	GCGC	2 cut(s)	411, 701
Cfr13I	GGNCC	3 cut(s)	54, 245, 262
CpoI	CGGWCCG	1 cut(s)	54
CspI	CGGWCCG	1 cut(s)	54
CviAII	CATG	3 cut(s)	71, 259, 751
DdeI	CTNAG	3 cut(s)	303, 340, 518
DpnI	GATC	9 cut(s)	47, 92, 114, 120, 444, 475, 607, 673, 690
DpnII	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
DraI	TTTAAA	1 cut(s)	241
EaeI	YGGCCR	1 cut(s)	423
Ecl136II	GAGCTC	1 cut(s)	234
Eco130I	CCWWGG	3 cut(s)	70, 258, 665
Eco24I	GRGCYC	1 cut(s)	236
Eco47I	GGWCC	2 cut(s)	54, 262
Eco53kI	GAGCTC	1 cut(s)	234
Eco57I	CTGAAG	1 cut(s)	467
Eco88I	CYCGRG	1 cut(s)	154
EcoICRI	GAGCTC	1 cut(s)	234
EcoO109I	RGGNCCY	1 cut(s)	245
EcoRII	CCWGG	2 cut(s)	490, 610
EcoT14I	CCWWGG	3 cut(s)	70, 258, 665
EcoT22I	ATGCAT	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	236
ErhI	CCWWGG	3 cut(s)	70, 258, 665
FaeI	CATG	3 cut(s)	74, 262, 754
FaiI	YATR	8 cut(s)	44, 72, 260, 312, 399, 497, 499, 752
FaqI	GGGAC	2 cut(s)	551, 761
FatI	CATG	3 cut(s)	70, 258, 750
FbaI	TGATCA	1 cut(s)	112
Fnu4HI	GCNGC	4 cut(s)	523, 596, 702, 705
FokI	GGATG	3 cut(s)	53, 88, 576
FriOI	GRGCYC	1 cut(s)	236
Fsp4HI	GCNGC	4 cut(s)	523, 596, 702, 705
FspBI	CTAG	3 cut(s)	147, 480, 486
GlaI	GCGC	2 cut(s)	410, 700
GluI	GCNGC	4 cut(s)	523, 596, 702, 705
GsaI	CCCAGC	1 cut(s)	510
HaeIII	GGCC	2 cut(s)	247, 425
HapII	CCGG	2 cut(s)	57, 439
HhaI	GCGC	2 cut(s)	411, 701
Hin1II	CATG	3 cut(s)	74, 262, 754
Hin6I	GCGC	2 cut(s)	409, 699
HinP1I	GCGC	2 cut(s)	409, 699
HinfI	GANTC	6 cut(s)	143, 188, 415, 514, 542, 629
HpaII	CCGG	2 cut(s)	57, 439
HphI	GGTGA	6 cut(s)	221, 233, 549, 555, 600, 627
Hpy188I	TCNGA	5 cut(s)	205, 231, 447, 628, 688
Hpy188III	TCNNGA	3 cut(s)	116, 289, 334
Hpy99I	CGWCG	4 cut(s)	126, 166, 169, 205
HpyAV	CCTTC	2 cut(s)	570, 651
HpyCH4III	ACNGT	5 cut(s)	54, 182, 367, 533, 684
HpyCH4V	TGCA	2 cut(s)	350, 707
HpyF10VI	GCNNNNNNNGC	2 cut(s)	382, 713
HpyF3I	CTNAG	3 cut(s)	303, 340, 518
Hsp92II	CATG	3 cut(s)	74, 262, 754
HspAI	GCGC	2 cut(s)	409, 699
Ksp22I	TGATCA	1 cut(s)	112
Kzo9I	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
LmnI	GCTCC	1 cut(s)	373
Lsp1109I	GCAGC	2 cut(s)	607, 691
LweI	GCATC	3 cut(s)	66, 337, 359
MaeI	CTAG	3 cut(s)	147, 480, 486
MaeIII	GTNAC	2 cut(s)	182, 740
MalI	GATC	9 cut(s)	47, 92, 114, 120, 444, 475, 607, 673, 690
MboI	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
MboII	GAAGA	2 cut(s)	460, 624
MflI	RGATCY	1 cut(s)	442
MhlI	GDGCHC	1 cut(s)	236
MlsI	TGGCCA	1 cut(s)	425
MluCI	AATT	1 cut(s)	735
MluNI	TGGCCA	1 cut(s)	425
MlyI	GAGTC	3 cut(s)	137, 197, 508
MmeI	TCCRAC	2 cut(s)	114, 183
Mox20I	TGGCCA	1 cut(s)	425
Mph1103I	ATGCAT	1 cut(s)	352
MscI	TGGCCA	1 cut(s)	425
MseI	TTAA	3 cut(s)	240, 369, 769
Msp20I	TGGCCA	1 cut(s)	425
MspA1I	CMGCKG	1 cut(s)	704
MspI	CCGG	2 cut(s)	57, 439
MspR9I	CCNGG	4 cut(s)	58, 440, 492, 612
MvaI	CCWGG	2 cut(s)	492, 612
MwoI	GCNNNNNNNGC	2 cut(s)	382, 713
NciI	CCSGG	2 cut(s)	58, 440
NcoI	CCATGG	2 cut(s)	70, 258
NdeII	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
NheI	GCTAGC	1 cut(s)	479
NlaIII	CATG	3 cut(s)	74, 262, 754
NmuCI	GTSAC	1 cut(s)	182
NsiI	ATGCAT	1 cut(s)	352
PaeR7I	CTCGAG	1 cut(s)	154
PcsI	WCGNNNNNNNCGW	1 cut(s)	161
PfeI	GAWTC	3 cut(s)	415, 542, 629
PfoI	TCCNGGA	2 cut(s)	56, 438
PkrI	GCNGC	4 cut(s)	524, 597, 703, 706
PleI	GAGTC	3 cut(s)	137, 196, 508
PpsI	GAGTC	3 cut(s)	137, 196, 508
PsiI	TTATAA	1 cut(s)	399
Psp124BI	GAGCTC	1 cut(s)	236
Psp6I	CCWGG	2 cut(s)	490, 610
PspFI	CCCAGC	1 cut(s)	506
PspGI	CCWGG	2 cut(s)	490, 610
PspPI	GGNCC	3 cut(s)	54, 245, 262
PspXI	VCTCGAGB	1 cut(s)	154
PsuI	RGATCY	1 cut(s)	442
Rsr2I	CGGWCCG	1 cut(s)	54
RsrII	CGGWCCG	1 cut(s)	54
SacI	GAGCTC	1 cut(s)	236
SaqAI	TTAA	3 cut(s)	240, 369, 769
SatI	GCNGC	4 cut(s)	523, 596, 702, 705
Sau3AI	GATC	9 cut(s)	45, 90, 112, 118, 442, 473, 605, 671, 688
Sau96I	GGNCC	3 cut(s)	54, 245, 262
SchI	GAGTC	3 cut(s)	137, 197, 508
ScrFI	CCNGG	4 cut(s)	58, 440, 492, 612
SduI	GDGCHC	1 cut(s)	236
SfaNI	GCATC	3 cut(s)	66, 337, 359
Sfr274I	CTCGAG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	54, 262
SlaI	CTCGAG	1 cut(s)	154
SmlI	CTYRAG	2 cut(s)	154, 269
SmoI	CTYRAG	2 cut(s)	154, 269
Sse9I	AATT	1 cut(s)	735
SsiI	CCGC	4 cut(s)	522, 593, 638, 702
SspMI	CTAG	3 cut(s)	147, 480, 486
SstI	GAGCTC	1 cut(s)	236
StyD4I	CCNGG	4 cut(s)	56, 438, 490, 610
StyI	CCWWGG	3 cut(s)	70, 258, 665
TaaI	ACNGT	5 cut(s)	54, 182, 367, 533, 684
TaqI	TCGA	2 cut(s)	89, 155
TasI	AATT	1 cut(s)	735
TauI	GCSGC	2 cut(s)	525, 704
TfiI	GAWTC	3 cut(s)	415, 542, 629
Tru1I	TTAA	3 cut(s)	240, 369, 769
Tru9I	TTAA	3 cut(s)	240, 369, 769
TscAI	CASTG	3 cut(s)	187, 538, 687
TseFI	GTSAC	1 cut(s)	182
TseI	GCWGC	2 cut(s)	595, 704
Tsp45I	GTSAC	1 cut(s)	182
TspDTI	ATGAA	1 cut(s)	55
TspRI	CASTG	3 cut(s)	187, 538, 687
VpaK11BI	GGWCC	2 cut(s)	54, 262
XapI	RAATTY	1 cut(s)	735
XhoI	CTCGAG	1 cut(s)	154
XspI	CTAG	3 cut(s)	147, 480, 486
Zsp2I	ATGCAT	1 cut(s)	352

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.