FvH4_2g30890

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000728
Physical Location & Seq
Forward (+)
23812460 .. 23814541
2082 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g30890.t1

Sequence Viewer

Length: 690 bp
ATGTCGATCGCGTTGGAGAGAATCGACGTGGAGCCTTCCTCGTCTGGCTTCATGCACGGTGCTGCGATGTCGTTTGGTTTGATATTTGAGTCGTCGTCGCCGGCTCCGGTTGCGTCTTCGTCGTCGTCGTCTTCGTTAGGGAAGAACAGCGACGTGTCGTCCGGGAGGTCGGAGGACGAAGGCAATGAGGAGAATGACGAGGCTCAGAGCTCGTATAAAGGTCCTTTGGATATGATGGAGGCTTTGGAGGAGGTTTTGCCTATCAGGAGAGGCATCTCGAAGTTCTATAACTACAAATCTAAGTCCTTCACGAGTCTGGCAGAGGCTGCAACTTCTTCCTCCATTAAAGAGATTGCAAAGCCAGATGATCCCTATACCAGGAAACGCAGGAACATGCTCGCTTCTAATCTGAGAATTTGCAGGGCCGGGATATCTAAATCTTCAAAGAGAACAATCACCGCAAGTCAGAGCACGTTGGCTTTGGCTATGACAATGTGCAGCTCGGAATCCAGTCCCAGCACTAGTGGTGATTCCAATTCAAGTTCCCTTGCTCCTCCATCTTTTAACAAACTCGGAAATCACTCTGCTTGGCGATCATTATCCTTGGCTGACTTGCAGGAATGTGCTACTTCTGCTGCTGTAAATACCACTTCTCGCTTCTTTCCTTCACATCCAAATATGCAGCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

24.44

Weight (kDa)

6.32

Isoelectric Point (pI)

74.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 11
AciI CCGC 1 cut(s) 459
AclWI GGATC 1 cut(s) 362
AcsI RAATTY 1 cut(s) 414
AfiI CCNNNNNNNGG 1 cut(s) 378
AflIII ACRYGT 1 cut(s) 153
AgsI TTSAA 2 cut(s) 444, 540
AhdI GACNNNNNGTC 1 cut(s) 157
AhlI ACTAGT 1 cut(s) 521
AjiI CACGTC 2 cut(s) 28, 154
AjnI CCWGG 1 cut(s) 377
AluBI AGCT 2 cut(s) 210, 501
AluI AGCT 2 cut(s) 210, 501
Alw21I GWGCWC 2 cut(s) 212, 473
AlwI GGATC 1 cut(s) 362
AlwNI CAGNNNCTG 1 cut(s) 326
AoxI GGCC 1 cut(s) 423
ApeKI GCWGC 5 cut(s) 62, 326, 498, 635, 682
ApoI RAATTY 1 cut(s) 414
AspS9I GGNCC 2 cut(s) 221, 423
AsuC2I CCSGG 2 cut(s) 163, 427
AsuHPI GGTGA 2 cut(s) 448, 539
AvaII GGWCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 212
BauI CACGAG 1 cut(s) 310
BbsI GAAGAC 2 cut(s) 108, 123
Bbv12I GWGCWC 2 cut(s) 212, 473
BbvI GCAGC 4 cut(s) 49, 313, 510, 622
BccI CCATC 2 cut(s) 229, 565
BciT130I CCWGG 1 cut(s) 379
BcnI CCSGG 2 cut(s) 163, 427
BcuI ACTAGT 1 cut(s) 521
BfaI CTAG 1 cut(s) 522
BisI GCNGC 5 cut(s) 63, 327, 499, 636, 683
BlsI GCNGC 5 cut(s) 64, 328, 500, 637, 684
Bme1390I CCNGG 3 cut(s) 163, 379, 427
Bme18I GGWCC 1 cut(s) 221
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgBI CACGTC 2 cut(s) 28, 154
BmgT120I GGNCC 2 cut(s) 221, 423
BmiI GGNNCC 2 cut(s) 33, 105
BmrFI CCNGG 3 cut(s) 163, 379, 427
BmsI GCATC 1 cut(s) 282
BpiI GAAGAC 2 cut(s) 108, 123
BplI GAGNNNNNCTC 2 cut(s) 23, 55
BpuMI CCSGG 2 cut(s) 163, 427
BsaBI GATNNNNATC 1 cut(s) 598
BsaJI CCNNGG 1 cut(s) 603
BsaWI WCCGGW 1 cut(s) 106
Bsc4I CCNNNNNNNGG 1 cut(s) 378
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 510
Bse3DI GCAATG 1 cut(s) 190
Bse8I GATNNNNATC 1 cut(s) 598
BseBI CCWGG 1 cut(s) 379
BseDI CCNNGG 1 cut(s) 603
BseGI GGATG 1 cut(s) 670
BseJI GATNNNNATC 1 cut(s) 598
BseLI CCNNNNNNNGG 1 cut(s) 378
BseMI GCAATG 1 cut(s) 190
BseMII CTCAG 2 cut(s) 218, 401
BseNI ACTGG 1 cut(s) 510
BseRI GAGGAG 3 cut(s) 203, 263, 543
BseXI GCAGC 4 cut(s) 49, 313, 510, 622
BseYI CCCAGC 1 cut(s) 515
BsgI GTGCAG 1 cut(s) 517
Bsh1236I CGCG 1 cut(s) 11
Bsh1285I CGRYCG 1 cut(s) 9
BshFI GGCC 1 cut(s) 425
BsiEI CGRYCG 1 cut(s) 9
BsiHKAI GWGCWC 2 cut(s) 212, 473
BsiSI CCGG 4 cut(s) 101, 107, 162, 426
BslFI GGGAC 1 cut(s) 498
BslI CCNNNNNNNGG 1 cut(s) 378
BsmFI GGGAC 1 cut(s) 498
BsnI GGCC 1 cut(s) 425
Bsp1286I GDGCHC 2 cut(s) 212, 473
Bsp143I GATC 3 cut(s) 6, 367, 593
BspACI CCGC 1 cut(s) 459
BspANI GGCC 1 cut(s) 425
BspCNI CTCAG 2 cut(s) 217, 402
BspFNI CGCG 1 cut(s) 11
BspLI GGNNCC 2 cut(s) 33, 105
BspPI GGATC 1 cut(s) 362
BsrDI GCAATG 1 cut(s) 190
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 510
BssAI RCCGGY 1 cut(s) 100
BssECI CCNNGG 1 cut(s) 603
BssMI GATC 3 cut(s) 6, 367, 593
BssSI CACGAG 1 cut(s) 310
BssT1I CCWWGG 1 cut(s) 603
Bst2BI CACGAG 1 cut(s) 310
Bst2UI CCWGG 1 cut(s) 379
Bst4CI ACNGT 1 cut(s) 59
BstAPI GCANNNNNTGC 1 cut(s) 326
BstC8I GCNNGC 2 cut(s) 102, 399
BstDEI CTNAG 3 cut(s) 204, 300, 410
BstENI CCTNNNNNAGG 1 cut(s) 376
BstF5I GGATG 1 cut(s) 670
BstFNI CGCG 1 cut(s) 11
BstKTI GATC 3 cut(s) 9, 370, 596
BstMBI GATC 3 cut(s) 6, 367, 593
BstMCI CGRYCG 1 cut(s) 9
BstMWI GCNNNNNNNGC 3 cut(s) 110, 326, 632
BstNI CCWGG 1 cut(s) 379
BstNSI RCATGY 1 cut(s) 397
BstSCI CCNGG 3 cut(s) 161, 377, 425
BstUI CGCG 1 cut(s) 11
BstV1I GCAGC 4 cut(s) 49, 313, 510, 622
BstV2I GAAGAC 2 cut(s) 108, 123
BsuRI GGCC 1 cut(s) 425
BtgZI GCGATG 1 cut(s) 80
BtrI CACGTC 2 cut(s) 28, 154
BtsCI GGATG 1 cut(s) 670
Cac8I GCNNGC 2 cut(s) 102, 399
CaiI CAGNNNCTG 1 cut(s) 326
Cfr10I RCCGGY 1 cut(s) 100
Cfr13I GGNCC 2 cut(s) 221, 423
CseI GACGC 1 cut(s) 102
CviAII CATG 2 cut(s) 52, 394
DdeI CTNAG 3 cut(s) 204, 300, 410
DpnI GATC 3 cut(s) 8, 369, 595
DpnII GATC 3 cut(s) 6, 367, 593
DriI GACNNNNNGTC 1 cut(s) 157
Eam1105I GACNNNNNGTC 1 cut(s) 157
Ecl136II GAGCTC 1 cut(s) 210
Eco130I CCWWGG 1 cut(s) 603
Eco24I GRGCYC 1 cut(s) 212
Eco32I GATATC 1 cut(s) 432
Eco47I GGWCC 1 cut(s) 221
Eco53kI GAGCTC 1 cut(s) 210
EcoICRI GAGCTC 1 cut(s) 210
EcoNI CCTNNNNNAGG 1 cut(s) 376
EcoO109I RGGNCCY 1 cut(s) 221
EcoRII CCWGG 1 cut(s) 377
EcoRV GATATC 1 cut(s) 432
EcoT14I CCWWGG 1 cut(s) 603
EcoT38I GRGCYC 1 cut(s) 212
ErhI CCWWGG 1 cut(s) 603
FaeI CATG 2 cut(s) 55, 397
FaiI YATR 8 cut(s) 53, 216, 233, 288, 375, 395, 488, 680
FaqI GGGAC 1 cut(s) 498
FatI CATG 2 cut(s) 51, 393
Fnu4HI GCNGC 5 cut(s) 63, 327, 499, 636, 683
FokI GGATG 1 cut(s) 657
FriOI GRGCYC 1 cut(s) 212
Fsp4HI GCNGC 5 cut(s) 63, 327, 499, 636, 683
FspBI CTAG 1 cut(s) 522
GluI GCNGC 5 cut(s) 63, 327, 499, 636, 683
GsaI CCCAGC 1 cut(s) 519
HaeIII GGCC 1 cut(s) 425
HapII CCGG 4 cut(s) 101, 107, 162, 426
HgaI GACGC 1 cut(s) 102
Hin1II CATG 2 cut(s) 55, 397
HinfI GANTC 5 cut(s) 21, 89, 313, 506, 530
HpaII CCGG 4 cut(s) 101, 107, 162, 426
HphI GGTGA 2 cut(s) 448, 539
Hpy188I TCNGA 6 cut(s) 172, 207, 411, 468, 505, 575
Hpy188III TCNNGA 3 cut(s) 265, 277, 310
Hpy99I CGWCG 7 cut(s) 29, 97, 100, 124, 127, 130, 155
HpyAV CCTTC 4 cut(s) 45, 173, 316, 675
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 3 cut(s) 27, 153, 473
HpyCH4V TGCA 7 cut(s) 55, 329, 356, 420, 498, 616, 682
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 326, 632
HpyF3I CTNAG 3 cut(s) 204, 300, 410
HpySE526I ACGT 3 cut(s) 27, 153, 473
Hsp92II CATG 2 cut(s) 55, 397
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 6, 367, 593
LmnI GCTCC 3 cut(s) 31, 109, 556
Lsp1109I GCAGC 4 cut(s) 49, 313, 510, 622
LweI GCATC 1 cut(s) 282
MaeI CTAG 1 cut(s) 522
MaeII ACGT 3 cut(s) 27, 153, 473
MalI GATC 3 cut(s) 8, 369, 595
MboI GATC 3 cut(s) 6, 367, 593
MboII GAAGA 5 cut(s) 108, 123, 154, 327, 432
MhlI GDGCHC 2 cut(s) 212, 473
MluCI AATT 2 cut(s) 414, 535
MlyI GAGTC 2 cut(s) 98, 322
MmeI TCCRAC 1 cut(s) 150
MroNI GCCGGC 1 cut(s) 100
MseI TTAA 2 cut(s) 345, 564
MspI CCGG 4 cut(s) 101, 107, 162, 426
MspR9I CCNGG 3 cut(s) 163, 379, 427
MvaI CCWGG 1 cut(s) 379
MvnI CGCG 1 cut(s) 11
MwoI GCNNNNNNNGC 3 cut(s) 110, 326, 632
NaeI GCCGGC 1 cut(s) 102
NciI CCSGG 2 cut(s) 163, 427
NdeII GATC 3 cut(s) 6, 367, 593
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 2 cut(s) 55, 397
NlaIV GGNNCC 2 cut(s) 33, 105
NspI RCATGY 1 cut(s) 397
PcsI WCGNNNNNNNCGW 2 cut(s) 125, 131
PdiI GCCGGC 1 cut(s) 102
PfeI GAWTC 3 cut(s) 21, 506, 530
PfoI TCCNGGA 1 cut(s) 161
PkrI GCNGC 5 cut(s) 64, 328, 500, 637, 684
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 2 cut(s) 97, 321
PpsI GAGTC 2 cut(s) 97, 321
PpuMI RGGWCCY 1 cut(s) 221
Psp124BI GAGCTC 1 cut(s) 212
Psp5II RGGWCCY 1 cut(s) 221
Psp6I CCWGG 1 cut(s) 377
PspFI CCCAGC 1 cut(s) 515
PspGI CCWGG 1 cut(s) 377
PspN4I GGNNCC 2 cut(s) 33, 105
PspPI GGNCC 2 cut(s) 221, 423
PspPPI RGGWCCY 1 cut(s) 221
PstNI CAGNNNCTG 1 cut(s) 326
PvuI CGATCG 1 cut(s) 9
SacI GAGCTC 1 cut(s) 212
SaqAI TTAA 2 cut(s) 345, 564
SatI GCNGC 5 cut(s) 63, 327, 499, 636, 683
Sau3AI GATC 3 cut(s) 6, 367, 593
Sau96I GGNCC 2 cut(s) 221, 423
SchI GAGTC 2 cut(s) 98, 322
ScrFI CCNGG 3 cut(s) 163, 379, 427
SduI GDGCHC 2 cut(s) 212, 473
SetI ASST 8 cut(s) 30, 156, 170, 212, 223, 255, 476, 503
SfaNI GCATC 1 cut(s) 282
SinI GGWCC 1 cut(s) 221
SpeI ACTAGT 1 cut(s) 521
Sse9I AATT 2 cut(s) 414, 535
SsiI CCGC 1 cut(s) 459
SspMI CTAG 1 cut(s) 522
SstI GAGCTC 1 cut(s) 212
StyD4I CCNGG 3 cut(s) 161, 377, 425
StyI CCWWGG 1 cut(s) 603
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 3 cut(s) 30, 156, 476
TaqI TCGA 3 cut(s) 5, 24, 278
TasI AATT 2 cut(s) 414, 535
TfiI GAWTC 3 cut(s) 21, 506, 530
Tru1I TTAA 2 cut(s) 345, 564
Tru9I TTAA 2 cut(s) 345, 564
TseI GCWGC 5 cut(s) 62, 326, 498, 635, 682
TspDTI ATGAA 1 cut(s) 40
VpaK11BI GGWCC 1 cut(s) 221
XagI CCTNNNNNAGG 1 cut(s) 376
XapI RAATTY 1 cut(s) 414
XceI RCATGY 1 cut(s) 397
XspI CTAG 1 cut(s) 522
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.