Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

5883859 .. 5885431

Gene Structure 1573 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1072700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCGACTGCATTGAATAGCGCCGCCGCCAGGATTGGCATCGCGCCATCGTCTGGGTTCGCCTGTGGTGGTTTGCTCTTCGACTCGCCGGAAACACGCCGGAGAGTTCCCGCCGGTGAGGTTTCGGTTTCTTCTGCGAGTTCGTCGTCGATCGGGAAGAACAGCGACGATGAATCGGAGAGATACGACGGCGGCGAAAATGATGAGGCTCAGAGCTCTTATAAAGGTCCGTTGGATATGATGAACGAGTTGGAGGAAGTTTTACCCATGAGGAGAGGGATCTCAAAATACTACAACTACAAATCCAAGTCCTTCACAAGTCTAGTAGGAGCTTCATCTTCTTCCAACATCAAGGAGCTTGCAAAACCAGACAATGCCTACACCCGAAAACGCAGGAACCTCCTTGCCTCCAATCACATGTGGGAGAAGAACCGAACCTCCTTGCCGCTGAGAAGCAATGGCGGCGGAATTTCAAAGAGACCGATTCCATCCAGTCGAAGCGCATTGGCTCTGGCTGTGAAGCTGGGCAACTGCTCGGAAAGCAGTACTAGTAGCACAAGTGAGGAATCCAATTCGAGCTCAAATCCAACGTCGCCGCGGCCACCTCTCCCACCGGGTTACGCTTGTCCACTAGGAGGTTATGCAGCTTGGAGATCGTATTCATTGGCTGATCTGCAAGAATGTACCACTGCTACAACTGCAAATACTTCACGATTCTCGGCGGCTTCCATGACGAAACCGAACGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

250

Amino Acids

26.44

Weight (kDa)

9.16

Isoelectric Point (pI)

73.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	222
AccB7I	CCANNNNNTGG	1 cut(s)	53
AccI	GTMKAC	1 cut(s)	5
AccII	CGCG	2 cut(s)	44, 598
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	1 cut(s)	599
AcsI	RAATTY	1 cut(s)	468
AfaI	GTAC	2 cut(s)	547, 685
AfiI	CCNNNNNNNGG	3 cut(s)	30, 53, 635
AflIII	ACRYGT	2 cut(s)	417, 744
AgsI	TTSAA	2 cut(s)	16, 474
AhlI	ACTAGT	1 cut(s)	548
AjnI	CCWGG	1 cut(s)	29
AloI	GAACNNNNNNTCC	2 cut(s)	422, 454
AluBI	AGCT	6 cut(s)	216, 332, 358, 523, 579, 647
AluI	AGCT	6 cut(s)	216, 332, 358, 523, 579, 647
Alw21I	GWGCWC	2 cut(s)	218, 581
Alw26I	GTCTC	1 cut(s)	472
AlwI	GGATC	1 cut(s)	287
AoxI	GGCC	1 cut(s)	599
ApeKI	GCWGC	1 cut(s)	644
ApoI	RAATTY	1 cut(s)	468
ArsI	GACNNNNNNTTYG	2 cut(s)	575, 607
AspLEI	GCGC	3 cut(s)	23, 46, 503
AspS9I	GGNCC	1 cut(s)	227
AsuC2I	CCSGG	1 cut(s)	615
AsuHPI	GGTGA	1 cut(s)	128
AvaII	GGWCC	1 cut(s)	227
BanII	GRGCYC	2 cut(s)	218, 581
Bbv12I	GWGCWC	2 cut(s)	218, 581
BbvI	GCAGC	1 cut(s)	656
BccI	CCATC	2 cut(s)	55, 496
BceAI	ACGGC	1 cut(s)	205
BciT130I	CCWGG	1 cut(s)	31
BcnI	CCSGG	1 cut(s)	615
BcoDI	GTCTC	1 cut(s)	472
BcuI	ACTAGT	1 cut(s)	548
BfaI	CTAG	3 cut(s)	323, 549, 632
BfoI	RGCGCY	1 cut(s)	24
BisI	GCNGC	9 cut(s)	24, 27, 193, 446, 463, 596, 599, 645, 723
BlsI	GCNGC	9 cut(s)	25, 28, 194, 447, 464, 597, 600, 646, 724
BmcAI	AGTACT	1 cut(s)	547
Bme1390I	CCNGG	2 cut(s)	31, 615
Bme18I	GGWCC	1 cut(s)	227
BmgT120I	GGNCC	1 cut(s)	227
BmiI	GGNNCC	1 cut(s)	398
BmrFI	CCNGG	2 cut(s)	31, 615
BmsI	GCATC	1 cut(s)	48
BpuMI	CCSGG	1 cut(s)	615
BsaBI	GATNNNNATC	1 cut(s)	38
BsaI	GGTCTC	1 cut(s)	472
BsaJI	CCNNGG	1 cut(s)	596
BsaXI	ACNNNNNCTCC	2 cut(s)	422, 452
Bsc4I	CCNNNNNNNGG	3 cut(s)	30, 53, 635
Bse118I	RCCGGY	1 cut(s)	113
Bse1I	ACTGG	1 cut(s)	492
Bse3DI	GCAATG	1 cut(s)	463
Bse8I	GATNNNNATC	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	31
BseDI	CCNNGG	1 cut(s)	596
BseGI	GGATG	1 cut(s)	488
BseJI	GATNNNNATC	1 cut(s)	38
BseLI	CCNNNNNNNGG	3 cut(s)	30, 53, 635
BseMI	GCAATG	1 cut(s)	463
BseMII	CTCAG	2 cut(s)	224, 440
BseNI	ACTGG	1 cut(s)	492
BseRI	GAGGAG	1 cut(s)	286
BseXI	GCAGC	1 cut(s)	656
BseYI	CCCAGC	1 cut(s)	523
Bsh1236I	CGCG	2 cut(s)	44, 598
Bsh1285I	CGRYCG	1 cut(s)	153
BshFI	GGCC	1 cut(s)	601
BsiEI	CGRYCG	1 cut(s)	153
BsiHKAI	GWGCWC	2 cut(s)	218, 581
BsiSI	CCGG	4 cut(s)	89, 100, 114, 614
BslI	CCNNNNNNNGG	3 cut(s)	30, 53, 635
BsmAI	GTCTC	1 cut(s)	472
BsnI	GGCC	1 cut(s)	601
Bso31I	GGTCTC	1 cut(s)	472
Bsp1286I	GDGCHC	2 cut(s)	218, 581
Bsp143I	GATC	4 cut(s)	150, 279, 653, 670
BspANI	GGCC	1 cut(s)	601
BspCNI	CTCAG	2 cut(s)	223, 441
BspFNI	CGCG	2 cut(s)	44, 598
BspLI	GGNNCC	1 cut(s)	398
BspPI	GGATC	1 cut(s)	287
BspQI	GCTCTTC	1 cut(s)	83
BspTNI	GGTCTC	1 cut(s)	472
BsrDI	GCAATG	1 cut(s)	463
BsrFI	RCCGGY	1 cut(s)	113
BsrI	ACTGG	1 cut(s)	492
BssAI	RCCGGY	1 cut(s)	113
BssECI	CCNNGG	1 cut(s)	596
BssMI	GATC	4 cut(s)	150, 279, 653, 670
Bst2UI	CCWGG	1 cut(s)	31
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	360
BstDEI	CTNAG	2 cut(s)	210, 449
BstDSI	CCRYGG	1 cut(s)	596
BstF5I	GGATG	1 cut(s)	488
BstFNI	CGCG	2 cut(s)	44, 598
BstH2I	RGCGCY	1 cut(s)	24
BstHHI	GCGC	3 cut(s)	23, 46, 503
BstKTI	GATC	4 cut(s)	153, 282, 656, 673
BstMAI	GTCTC	1 cut(s)	472
BstMBI	GATC	4 cut(s)	150, 279, 653, 670
BstMCI	CGRYCG	1 cut(s)	153
BstMWI	GCNNNNNNNGC	3 cut(s)	462, 540, 698
BstNI	CCWGG	1 cut(s)	31
BstNSI	RCATGY	1 cut(s)	421
BstSCI	CCNGG	2 cut(s)	29, 613
BstUI	CGCG	2 cut(s)	44, 598
BstV1I	GCAGC	1 cut(s)	656
BstX2I	RGATCY	1 cut(s)	279
BstYI	RGATCY	1 cut(s)	279
BsuRI	GGCC	1 cut(s)	601
BtgI	CCRYGG	1 cut(s)	596
BtgZI	GCGATG	1 cut(s)	25
BtsCI	GGATG	1 cut(s)	488
BtsI	GCAGTG	1 cut(s)	687
BtsIMutI	CAGTG	1 cut(s)	687
Cac8I	GCNNGC	1 cut(s)	360
CfoI	GCGC	3 cut(s)	23, 46, 503
Cfr10I	RCCGGY	1 cut(s)	113
Cfr13I	GGNCC	1 cut(s)	227
Cfr42I	CCGCGG	1 cut(s)	599
Csp6I	GTAC	2 cut(s)	546, 684
CviAII	CATG	3 cut(s)	268, 418, 730
CviQI	GTAC	2 cut(s)	546, 684
DdeI	CTNAG	2 cut(s)	210, 449
DpnI	GATC	4 cut(s)	152, 281, 655, 672
DpnII	GATC	4 cut(s)	150, 279, 653, 670
EaeI	YGGCCR	1 cut(s)	599
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
EciI	GGCGGA	1 cut(s)	480
Ecl136II	GAGCTC	2 cut(s)	216, 579
Eco24I	GRGCYC	2 cut(s)	218, 581
Eco31I	GGTCTC	1 cut(s)	472
Eco47I	GGWCC	1 cut(s)	227
Eco53kI	GAGCTC	2 cut(s)	216, 579
EcoICRI	GAGCTC	2 cut(s)	216, 579
EcoRII	CCWGG	1 cut(s)	29
EcoT38I	GRGCYC	2 cut(s)	218, 581
FaeI	CATG	3 cut(s)	271, 421, 733
FaiI	YATR	6 cut(s)	222, 239, 269, 419, 642, 731
FatI	CATG	3 cut(s)	267, 417, 729
FauI	CCCGC	1 cut(s)	118
FblI	GTMKAC	1 cut(s)	5
Fnu4HI	GCNGC	9 cut(s)	24, 27, 193, 446, 463, 596, 599, 645, 723
FokI	GGATG	1 cut(s)	475
FriOI	GRGCYC	2 cut(s)	218, 581
Fsp4HI	GCNGC	9 cut(s)	24, 27, 193, 446, 463, 596, 599, 645, 723
FspBI	CTAG	3 cut(s)	323, 549, 632
GlaI	GCGC	3 cut(s)	22, 45, 502
GluI	GCNGC	9 cut(s)	24, 27, 193, 446, 463, 596, 599, 645, 723
GsaI	CCCAGC	1 cut(s)	527
HaeII	RGCGCY	1 cut(s)	24
HaeIII	GGCC	1 cut(s)	601
HapII	CCGG	4 cut(s)	89, 100, 114, 614
HhaI	GCGC	3 cut(s)	23, 46, 503
Hin1II	CATG	3 cut(s)	271, 421, 733
Hin6I	GCGC	3 cut(s)	21, 44, 501
HinP1I	GCGC	3 cut(s)	21, 44, 501
HincII	GTYRAC	1 cut(s)	6
HindII	GTYRAC	1 cut(s)	6
HinfI	GANTC	5 cut(s)	83, 173, 484, 566, 714
HpaII	CCGG	4 cut(s)	89, 100, 114, 614
HphI	GGTGA	1 cut(s)	128
Hpy166II	GTNNAC	2 cut(s)	6, 629
Hpy188I	TCNGA	3 cut(s)	178, 213, 538
Hpy188III	TCNNGA	2 cut(s)	154, 711
Hpy8I	GTNNAC	2 cut(s)	6, 629
Hpy99I	CGWCG	5 cut(s)	148, 151, 170, 191, 595
HpyAV	CCTTC	1 cut(s)	322
HpyCH4IV	ACGT	2 cut(s)	590, 744
HpyCH4V	TGCA	5 cut(s)	11, 362, 644, 676, 701
HpyF10VI	GCNNNNNNNGC	3 cut(s)	462, 540, 698
HpyF3I	CTNAG	2 cut(s)	210, 449
HpySE526I	ACGT	2 cut(s)	590, 744
Hsp92II	CATG	3 cut(s)	271, 421, 733
HspAI	GCGC	3 cut(s)	21, 44, 501
KspI	CCGCGG	1 cut(s)	599
Kzo9I	GATC	4 cut(s)	150, 279, 653, 670
LguI	GCTCTTC	1 cut(s)	83
LmnI	GCTCC	2 cut(s)	329, 355
Lsp1109I	GCAGC	1 cut(s)	656
LweI	GCATC	1 cut(s)	48
MaeI	CTAG	3 cut(s)	323, 549, 632
MaeII	ACGT	2 cut(s)	590, 744
MaeIII	GTNAC	1 cut(s)	617
MalI	GATC	4 cut(s)	152, 281, 655, 672
MboI	GATC	4 cut(s)	150, 279, 653, 670
MboII	GAAGA	6 cut(s)	70, 123, 169, 330, 333, 439
MflI	RGATCY	1 cut(s)	279
MhlI	GDGCHC	2 cut(s)	218, 581
MluCI	AATT	2 cut(s)	468, 571
MlyI	GAGTC	1 cut(s)	77
MmeI	TCCRAC	4 cut(s)	213, 231, 369, 611
MspA1I	CMGCKG	2 cut(s)	448, 598
MspI	CCGG	4 cut(s)	89, 100, 114, 614
MspR9I	CCNGG	2 cut(s)	31, 615
MvaI	CCWGG	1 cut(s)	31
MvnI	CGCG	2 cut(s)	44, 598
MwoI	GCNNNNNNNGC	3 cut(s)	462, 540, 698
NciI	CCSGG	1 cut(s)	615
NdeII	GATC	4 cut(s)	150, 279, 653, 670
NlaIII	CATG	3 cut(s)	271, 421, 733
NlaIV	GGNNCC	1 cut(s)	398
NmeAIII	GCCGAG	1 cut(s)	698
NspI	RCATGY	1 cut(s)	421
PciI	ACATGT	1 cut(s)	417
PciSI	GCTCTTC	1 cut(s)	83
PcsI	WCGNNNNNNNCGW	1 cut(s)	192
PfeI	GAWTC	4 cut(s)	173, 484, 566, 714
PflMI	CCANNNNNTGG	1 cut(s)	53
PkrI	GCNGC	9 cut(s)	25, 28, 194, 447, 464, 597, 600, 646, 724
Ple19I	CGATCG	1 cut(s)	153
PleI	GAGTC	1 cut(s)	77
PpsI	GAGTC	1 cut(s)	77
PscI	ACATGT	1 cut(s)	417
PsiI	TTATAA	1 cut(s)	222
Psp124BI	GAGCTC	2 cut(s)	218, 581
Psp6I	CCWGG	1 cut(s)	29
PspFI	CCCAGC	1 cut(s)	523
PspGI	CCWGG	1 cut(s)	29
PspN4I	GGNNCC	1 cut(s)	398
PspPI	GGNCC	1 cut(s)	227
PsuI	RGATCY	1 cut(s)	279
PvuI	CGATCG	1 cut(s)	153
RsaI	GTAC	2 cut(s)	547, 685
RsaNI	GTAC	2 cut(s)	546, 684
SacI	GAGCTC	2 cut(s)	218, 581
SacII	CCGCGG	1 cut(s)	599
SalI	GTCGAC	1 cut(s)	4
SapI	GCTCTTC	1 cut(s)	83
SatI	GCNGC	9 cut(s)	24, 27, 193, 446, 463, 596, 599, 645, 723
Sau3AI	GATC	4 cut(s)	150, 279, 653, 670
Sau96I	GGNCC	1 cut(s)	227
ScaI	AGTACT	1 cut(s)	547
SchI	GAGTC	1 cut(s)	77
ScrFI	CCNGG	2 cut(s)	31, 615
SduI	GDGCHC	2 cut(s)	218, 581
SfaNI	GCATC	1 cut(s)	48
Sfr303I	CCGCGG	1 cut(s)	599
SgrAI	CRCCGGYG	1 cut(s)	113
SgrBI	CCGCGG	1 cut(s)	599
SinI	GGWCC	1 cut(s)	227
SpeI	ACTAGT	1 cut(s)	548
Sse9I	AATT	2 cut(s)	468, 571
SspMI	CTAG	3 cut(s)	323, 549, 632
SstI	GAGCTC	2 cut(s)	218, 581
StyD4I	CCNGG	2 cut(s)	29, 613
TaiI	ACGT	2 cut(s)	593, 747
TaqI	TCGA	5 cut(s)	5, 81, 149, 496, 575
TaqII	GACCGA	1 cut(s)	496
TasI	AATT	2 cut(s)	468, 571
TatI	WGTACW	1 cut(s)	545
TauI	GCSGC	8 cut(s)	26, 29, 195, 448, 465, 598, 601, 725
TfiI	GAWTC	4 cut(s)	173, 484, 566, 714
TscAI	CASTG	1 cut(s)	694
TseI	GCWGC	1 cut(s)	644
TspDTI	ATGAA	4 cut(s)	186, 257, 324, 651
TspGWI	ACGGA	1 cut(s)	219
TspRI	CASTG	1 cut(s)	694
Van91I	CCANNNNNTGG	1 cut(s)	53
VpaK11BI	GGWCC	1 cut(s)	227
XapI	RAATTY	1 cut(s)	468
XceI	RCATGY	1 cut(s)	421
XmiI	GTMKAC	1 cut(s)	5
XspI	CTAG	3 cut(s)	323, 549, 632
ZrmI	AGTACT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.