Rroxscaffold_1G00046160

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000001
OG0000728
Physical Location & Seq
Reverse (-)
65312540 .. 65315884
3345 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_1G00046160.1

Sequence Viewer

Length: 210 bp
ATGGAACAAATGAGCAACCGAAACACTGGGGAGCAAACAAAAAGTTATGACCAAGTTGAGGAAGCTAAACCGAACTATGGCTCATCACCTGTCCATGCGACGACACGGGTGTCGCAGTTGGTGAAGATCGAACGCATTGAAACCACGGTTGCCAAGATCGACCAGTTTGCACCTTCTAAACAAGATAAGAGCAAGCGCTGCGAGATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

69

Amino Acids

7.84

Weight (kDa)

7.87

Isoelectric Point (pI)

66.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 109
AfeI AGCGCT 1 cut(s) 197
AfiI CCNNNNNNNGG 2 cut(s) 58, 77
AgsI TTSAA 1 cut(s) 140
AluBI AGCT 1 cut(s) 65
AluI AGCT 1 cut(s) 65
Aor51HI AGCGCT 1 cut(s) 197
ApeKI GCWGC 1 cut(s) 198
AspLEI GCGC 1 cut(s) 198
AsuHPI GGTGA 2 cut(s) 78, 133
BbvI GCAGC 1 cut(s) 185
BcgI CGANNNNNNTGC 2 cut(s) 149, 183
BfoI RGCGCY 1 cut(s) 199
BisI GCNGC 1 cut(s) 199
BlsI GCNGC 1 cut(s) 200
BmrI ACTGGG 1 cut(s) 36
BmuI ACTGGG 1 cut(s) 36
BsaJI CCNNGG 1 cut(s) 144
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 77
Bse1I ACTGG 2 cut(s) 31, 163
BseDI CCNNGG 1 cut(s) 144
BseLI CCNNNNNNNGG 2 cut(s) 58, 77
BseNI ACTGG 2 cut(s) 31, 163
BseXI GCAGC 1 cut(s) 185
BslI CCNNNNNNNGG 2 cut(s) 58, 77
Bsp143I GATC 2 cut(s) 126, 156
BsrI ACTGG 2 cut(s) 31, 163
BssECI CCNNGG 1 cut(s) 144
BssMI GATC 2 cut(s) 126, 156
Bst4CI ACNGT 1 cut(s) 148
BstAPI GCANNNNNTGC 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 194
BstDSI CCRYGG 1 cut(s) 144
BstH2I RGCGCY 1 cut(s) 199
BstHHI GCGC 1 cut(s) 198
BstKTI GATC 2 cut(s) 129, 159
BstMBI GATC 2 cut(s) 126, 156
BstMWI GCNNNNNNNGC 1 cut(s) 198
BstV1I GCAGC 1 cut(s) 185
BtgI CCRYGG 1 cut(s) 144
BtsIMutI CAGTG 1 cut(s) 24
Cac8I GCNNGC 1 cut(s) 194
CfoI GCGC 1 cut(s) 198
CviAII CATG 1 cut(s) 95
CviJI RGCY 2 cut(s) 65, 81
CviKI_1 RGCY 2 cut(s) 65, 81
DpnI GATC 2 cut(s) 128, 158
DpnII GATC 2 cut(s) 126, 156
DrdI GACNNNNNNGTC 1 cut(s) 109
DseDI GACNNNNNNGTC 1 cut(s) 109
Eco47III AGCGCT 1 cut(s) 197
FaeI CATG 1 cut(s) 98
FaiI YATR 3 cut(s) 48, 78, 96
FatI CATG 1 cut(s) 94
Fnu4HI GCNGC 1 cut(s) 199
Fsp4HI GCNGC 1 cut(s) 199
GlaI GCGC 1 cut(s) 197
GluI GCNGC 1 cut(s) 199
HaeII RGCGCY 1 cut(s) 199
HhaI GCGC 1 cut(s) 198
Hin1II CATG 1 cut(s) 98
Hin6I GCGC 1 cut(s) 196
HinP1I GCGC 1 cut(s) 196
HphI GGTGA 2 cut(s) 78, 133
Hpy99I CGWCG 1 cut(s) 103
HpyAV CCTTC 1 cut(s) 183
HpyCH4III ACNGT 1 cut(s) 148
HpyCH4V TGCA 1 cut(s) 170
HpyF10VI GCNNNNNNNGC 1 cut(s) 198
Hsp92II CATG 1 cut(s) 98
HspAI GCGC 1 cut(s) 196
Kzo9I GATC 2 cut(s) 126, 156
LmnI GCTCC 1 cut(s) 31
LpnPI CCDG 3 cut(s) 12, 102, 176
Lsp1109I GCAGC 1 cut(s) 185
MalI GATC 2 cut(s) 128, 158
MboI GATC 2 cut(s) 126, 156
MboII GAAGA 1 cut(s) 136
MnlI CCTC 1 cut(s) 52
MwoI GCNNNNNNNGC 1 cut(s) 198
NdeII GATC 2 cut(s) 126, 156
NlaIII CATG 1 cut(s) 98
PkrI GCNGC 1 cut(s) 200
SatI GCNGC 1 cut(s) 199
Sau3AI GATC 2 cut(s) 126, 156
SetI ASST 3 cut(s) 67, 91, 175
TaaI ACNGT 1 cut(s) 148
TaqI TCGA 2 cut(s) 129, 159
TscAI CASTG 1 cut(s) 31
TseI GCWGC 1 cut(s) 198
TspRI CASTG 1 cut(s) 31
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.