Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0000728

Physical Location & Seq

Genomic Coordinates Reverse (-)

7249014 .. 7250770

Gene Structure 1757 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G21940.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGGATTGTGTTGAATCTTATTTATCCGGAGATAATTCTGATGAATCTCCGGTGATGCATACTTGGTTTTCTCCGTCTCCGTCTCCGTCTGACTCTTCCTCTTCTCCTTCATCTTCTGCTTCTTCTTCCATTGGGAGGAATAGCGACGACGGTGAGAAATCGTCGGAGGACGGTGGAGATGACGCCGGAGAGAATGAAGTTGAGTCTCCGTATAAAGGTCCTCTTGAAATGATGGAATCTCTCGAACAAGTCTTACCTGTTAGGAAAGGGATATCGAAGTATTACAGTGGAAAGTCAAAGTCTTTTACTAATTTAACGGCGGAGGCAGCTTCGGCGTTGACTTCTTCTTCGTCGATGAAAGATTTAGCGAAGCCGGAGAATCCTTACAGTAGGAGGAGGAGGAATCTCCTCTGCCATCAGATTTGGGAAAATAACAAGACGACTCCACGTGGTGGGATCTCGAAGAAACACGTTATGAGTTCTAGCAGAAGCGCTTTGACGCTAGCTATGGCTGTTGCGGCTGGTGTGATGACCGGAGAAGGATCTTCTTCCGGAGGTGACTCGTCGCCGGGATCAAGTCCGACGACTTCTGGATCTCCTCCGAGGCAGCTACATCATCATCAACATCAGATGAAGAAGCTTCCTCCGTTGTATCCTAGGAGTCAAGGGTCTTTTGGTAATTTGACTTCGTCTCAGTCGTCGTTGGGTTTTTGTGCCTGGAGATCGTTTTCGGTGGCTGATTTTCCGAGGTGTTTTCCGGCGACGGCGAGTGGGATTGGGTTTAATGACTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

264

Amino Acids

28.01

Weight (kDa)

6.38

Isoelectric Point (pI)

74.33

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000728)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G43850 AT3G43850 AT5G21940
fragaria_vesca	FvH4_1g08640 FvH4_2g30890
malus_domestica	MD02G1091300.v1.1 MD08G1072700.v1.1 MD15G1049100.v1.1 MD15G1217500.v1.1
prunus_persica	Prupe.1G403400_v2.0.a1 Prupe.7G199000_v2.0.a1
pyrus_communis	pycom02g07280 pycom08g06000 pycom15g04790 pycom15g19310
rosa_chinensis	RchiOBHm_Chr1g0322321 RchiOBHm_Chr1g0336271 RchiOBHm_Chr2g0094921 RchiOBHm_Chr3g0491201 RchiOBHm_Chr4g0419681 RchiOBHm_Chr6g0269001 RchiOBHm_Chr6g0311951
rosa_laevigata	RLG00000001977 RLG00000010366 RLG00000010816 RLG00000016531 RLG00000016764
rosa_multiflora	Rmu_sc0000726.1_g000004 Rmu_sc0001772.1_g000023 Rmu_sc0001910.1_g000001 Rmu_sc0002270.1_g000009 Rmu_sc0004316.1_g000003 Rmu_sc0004359.1_g000032 Rmu_sc0004406.1_g000018 Rmu_sc0005381.1_g000003 Rmu_sc0006611.1_g000001
rosa_roxburghii	Rroxscaffold_1G00046160 Rroxscaffold_2G00146770 Rroxscaffold_7G00157190
rosa_rugosa	Rorug02G0048900 Rorug04G0408100.1 Rorug05G0539300 Rorug06G0303900 Rorug06G0304000 Rorug06G0391600
rosa_samantha	Rh1AG424000 Rh2AG095500 Rh2AG334700 Rh2BG096500 Rh2BG097300 Rh2BG097400 Rh2CG098500 Rh2CG099400 Rh2DG095200 Rh2DG096800 Rh2DG283600 Rh3AG144800 Rh3AG297300 Rh3BG167200 Rh4AG147800 Rh6AG508100 Rh6BG519300 Rh6CG525000 Rh6DG172200 Rh6DG510600 Rh7AG234100 Rh7DG193900 Rh7DG241800 Rh7DG390800
rosa_wichuraiana	Rw1G018420 Rw2G007190 Rw6G044230

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	452
AccIII	TCCGGA	2 cut(s)	26, 551
AciI	CCGC	2 cut(s)	320, 518
AclWI	GGATC	4 cut(s)	464, 550, 580, 601
AcvI	CACGTG	1 cut(s)	449
AcyI	GRCGYC	1 cut(s)	183
AdeI	CACNNNGTG	1 cut(s)	452
AfeI	AGCGCT	1 cut(s)	493
AfiI	CCNNNNNNNGG	3 cut(s)	135, 215, 452
AflIII	ACRYGT	1 cut(s)	469
AgsI	TTSAA	2 cut(s)	14, 227
AjnI	CCWGG	1 cut(s)	716
AluBI	AGCT	4 cut(s)	329, 506, 610, 640
AluI	AGCT	4 cut(s)	329, 506, 610, 640
Alw26I	GTCTC	4 cut(s)	81, 87, 210, 696
AlwI	GGATC	4 cut(s)	464, 550, 580, 601
Aor13HI	TCCGGA	2 cut(s)	26, 551
Aor51HI	AGCGCT	1 cut(s)	493
ApeKI	GCWGC	2 cut(s)	326, 607
ArsI	GACNNNNNNTTYG	2 cut(s)	331, 363
AspA2I	CCTAGG	1 cut(s)	656
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	1 cut(s)	218
AsuC2I	CCSGG	1 cut(s)	570
AsuHPI	GGTGA	3 cut(s)	64, 164, 569
AsuNHI	GCTAGC	1 cut(s)	502
AvaII	GGWCC	1 cut(s)	218
AvrII	CCTAGG	1 cut(s)	656
BarI	GAAGNNNNNNTAC	2 cut(s)	670, 702
BbrPI	CACGTG	1 cut(s)	449
BbvI	GCAGC	2 cut(s)	338, 619
BccI	CCATC	2 cut(s)	226, 423
BceAI	ACGGC	2 cut(s)	333, 780
BciT130I	CCWGG	1 cut(s)	718
BciVI	GTATCC	1 cut(s)	663
BcnI	CCSGG	1 cut(s)	570
BcoDI	GTCTC	4 cut(s)	81, 87, 210, 696
BfaI	CTAG	3 cut(s)	483, 503, 657
BfoI	RGCGCY	1 cut(s)	495
BfuI	GTATCC	1 cut(s)	663
BisI	GCNGC	3 cut(s)	327, 519, 608
BlnI	CCTAGG	1 cut(s)	656
BlsI	GCNGC	3 cut(s)	328, 520, 609
Bme1390I	CCNGG	2 cut(s)	570, 718
Bme18I	GGWCC	1 cut(s)	218
BmgT120I	GGNCC	1 cut(s)	218
BmrFI	CCNGG	2 cut(s)	570, 718
BmsI	GCATC	1 cut(s)	45
BmtI	GCTAGC	1 cut(s)	506
BpmI	CTGGAG	1 cut(s)	739
BpuMI	CCSGG	1 cut(s)	570
BsaAI	YACGTR	1 cut(s)	449
BsaHI	GRCGYC	1 cut(s)	183
BsaJI	CCNNGG	3 cut(s)	602, 656, 746
BsaWI	WCCGGW	4 cut(s)	26, 49, 533, 551
Bsc4I	CCNNNNNNNGG	3 cut(s)	135, 215, 452
BseAI	TCCGGA	2 cut(s)	26, 551
BseBI	CCWGG	1 cut(s)	718
BseDI	CCNNGG	3 cut(s)	602, 656, 746
BseLI	CCNNNNNNNGG	3 cut(s)	135, 215, 452
BseMII	CTCAG	1 cut(s)	707
BseRI	GAGGAG	4 cut(s)	398, 409, 412, 588
BseXI	GCAGC	2 cut(s)	338, 619
BsiSI	CCGG	8 cut(s)	27, 50, 186, 374, 534, 552, 569, 758
BslI	CCNNNNNNNGG	3 cut(s)	135, 215, 452
BsmAI	GTCTC	4 cut(s)	81, 87, 210, 696
BsmBI	CGTCTC	3 cut(s)	81, 87, 696
Bsp13I	TCCGGA	2 cut(s)	26, 551
Bsp143I	GATC	5 cut(s)	456, 542, 572, 593, 722
BspACI	CCGC	2 cut(s)	320, 518
BspCNI	CTCAG	1 cut(s)	706
BspEI	TCCGGA	2 cut(s)	26, 551
BspOI	GCTAGC	1 cut(s)	506
BspPI	GGATC	4 cut(s)	464, 550, 580, 601
BssECI	CCNNGG	3 cut(s)	602, 656, 746
BssMI	GATC	5 cut(s)	456, 542, 572, 593, 722
BssNI	GRCGYC	1 cut(s)	183
BssT1I	CCWWGG	1 cut(s)	656
Bst2UI	CCWGG	1 cut(s)	718
Bst4CI	ACNGT	4 cut(s)	152, 173, 287, 389
Bst6I	CTCTTC	2 cut(s)	100, 106
BstACI	GRCGYC	1 cut(s)	183
BstBAI	YACGTR	1 cut(s)	449
BstC8I	GCNNGC	1 cut(s)	504
BstDEI	CTNAG	1 cut(s)	693
BstH2I	RGCGCY	1 cut(s)	495
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	5 cut(s)	459, 545, 575, 596, 725
BstMAI	GTCTC	4 cut(s)	81, 87, 210, 696
BstMBI	GATC	5 cut(s)	456, 542, 572, 593, 722
BstMWI	GCNNNNNNNGC	3 cut(s)	326, 332, 518
BstNI	CCWGG	1 cut(s)	718
BstSCI	CCNGG	2 cut(s)	568, 716
BstV1I	GCAGC	2 cut(s)	338, 619
BstX2I	RGATCY	3 cut(s)	456, 542, 593
BstYI	RGATCY	3 cut(s)	456, 542, 593
BsuI	GTATCC	1 cut(s)	663
BtsIMutI	CAGTG	1 cut(s)	292
Cac8I	GCNNGC	1 cut(s)	504
CfoI	GCGC	1 cut(s)	494
Cfr13I	GGNCC	1 cut(s)	218
CseI	GACGC	2 cut(s)	191, 508
CviJI	RGCY	8 cut(s)	329, 373, 506, 512, 521, 610, 640, 737
CviKI_1	RGCY	8 cut(s)	329, 373, 506, 512, 521, 610, 640, 737
DdeI	CTNAG	1 cut(s)	693
DpnI	GATC	5 cut(s)	458, 544, 574, 595, 724
DpnII	GATC	5 cut(s)	456, 542, 572, 593, 722
DraIII	CACNNNGTG	1 cut(s)	452
Eam1104I	CTCTTC	2 cut(s)	100, 106
EarI	CTCTTC	2 cut(s)	100, 106
EciI	GGCGGA	1 cut(s)	335
Eco130I	CCWWGG	1 cut(s)	656
Eco32I	GATATC	1 cut(s)	273
Eco47I	GGWCC	1 cut(s)	218
Eco47III	AGCGCT	1 cut(s)	493
Eco72I	CACGTG	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	218
EcoRII	CCWGG	1 cut(s)	716
EcoRV	GATATC	1 cut(s)	273
EcoT14I	CCWWGG	1 cut(s)	656
EcoT22I	ATGCAT	1 cut(s)	60
ErhI	CCWWGG	1 cut(s)	656
Esp3I	CGTCTC	3 cut(s)	81, 87, 696
FaiI	YATR	4 cut(s)	60, 213, 476, 509
FalI	AAGNNNNNCTT	2 cut(s)	207, 239
Fnu4HI	GCNGC	3 cut(s)	327, 519, 608
Fsp4HI	GCNGC	3 cut(s)	327, 519, 608
FspBI	CTAG	3 cut(s)	483, 503, 657
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	3 cut(s)	327, 519, 608
GsuI	CTGGAG	1 cut(s)	739
HaeII	RGCGCY	1 cut(s)	495
HapII	CCGG	8 cut(s)	27, 50, 186, 374, 534, 552, 569, 758
HgaI	GACGC	2 cut(s)	191, 508
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	183
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	339
HindII	GTYRAC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	638
HpaII	CCGG	8 cut(s)	27, 50, 186, 374, 534, 552, 569, 758
HphI	GGTGA	3 cut(s)	64, 164, 569
Hpy166II	GTNNAC	1 cut(s)	339
Hpy188I	TCNGA	8 cut(s)	40, 91, 166, 420, 582, 603, 630, 747
Hpy188III	TCNNGA	6 cut(s)	27, 224, 242, 460, 552, 591
Hpy8I	GTNNAC	1 cut(s)	339
Hpy99I	CGWCG	8 cut(s)	149, 152, 166, 355, 568, 586, 703, 766
HpyAV	CCTTC	2 cut(s)	117, 533
HpyCH4III	ACNGT	4 cut(s)	152, 173, 287, 389
HpyCH4IV	ACGT	2 cut(s)	448, 471
HpyCH4V	TGCA	1 cut(s)	58
HpyF10VI	GCNNNNNNNGC	3 cut(s)	326, 332, 518
HpyF3I	CTNAG	1 cut(s)	693
HpySE526I	ACGT	2 cut(s)	448, 471
Hsp92I	GRCGYC	1 cut(s)	183
HspAI	GCGC	1 cut(s)	492
Kpn2I	TCCGGA	2 cut(s)	26, 551
Kzo9I	GATC	5 cut(s)	456, 542, 572, 593, 722
Lsp1109I	GCAGC	2 cut(s)	338, 619
LweI	GCATC	1 cut(s)	45
MaeI	CTAG	3 cut(s)	483, 503, 657
MaeII	ACGT	2 cut(s)	448, 471
MaeIII	GTNAC	1 cut(s)	557
MalI	GATC	5 cut(s)	458, 544, 574, 595, 724
MboI	GATC	5 cut(s)	456, 542, 572, 593, 722
MflI	RGATCY	3 cut(s)	456, 542, 593
MluCI	AATT	3 cut(s)	34, 310, 679
MlyI	GAGTC	6 cut(s)	86, 212, 436, 554, 670, 782
MmeI	TCCRAC	2 cut(s)	144, 605
Mph1103I	ATGCAT	1 cut(s)	60
MroI	TCCGGA	2 cut(s)	26, 551
MseI	TTAA	2 cut(s)	314, 783
MspI	CCGG	8 cut(s)	27, 50, 186, 374, 534, 552, 569, 758
MspR9I	CCNGG	2 cut(s)	570, 718
MvaI	CCWGG	1 cut(s)	718
MwoI	GCNNNNNNNGC	3 cut(s)	326, 332, 518
NciI	CCSGG	1 cut(s)	570
NdeII	GATC	5 cut(s)	456, 542, 572, 593, 722
NheI	GCTAGC	1 cut(s)	502
NmuCI	GTSAC	1 cut(s)	557
NsiI	ATGCAT	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	1 cut(s)	695
PfeI	GAWTC	5 cut(s)	14, 44, 236, 379, 403
PflFI	GACNNNGTC	1 cut(s)	688
PflMI	CCANNNNNTGG	1 cut(s)	452
PkrI	GCNGC	3 cut(s)	328, 520, 609
PleI	GAGTC	6 cut(s)	86, 211, 436, 554, 669, 782
PmaCI	CACGTG	1 cut(s)	449
PmlI	CACGTG	1 cut(s)	449
PpsI	GAGTC	6 cut(s)	86, 211, 436, 554, 669, 782
Ppu21I	YACGTR	1 cut(s)	449
PpuMI	RGGWCCY	1 cut(s)	218
Psp5II	RGGWCCY	1 cut(s)	218
Psp6I	CCWGG	1 cut(s)	716
PspCI	CACGTG	1 cut(s)	449
PspGI	CCWGG	1 cut(s)	716
PspPI	GGNCC	1 cut(s)	218
PspPPI	RGGWCCY	1 cut(s)	218
PsrI	GAACNNNNNNTAC	2 cut(s)	237, 269
PsuI	RGATCY	3 cut(s)	456, 542, 593
PsyI	GACNNNGTC	1 cut(s)	688
SaqAI	TTAA	2 cut(s)	314, 783
SatI	GCNGC	3 cut(s)	327, 519, 608
Sau3AI	GATC	5 cut(s)	456, 542, 572, 593, 722
Sau96I	GGNCC	1 cut(s)	218
SchI	GAGTC	6 cut(s)	86, 212, 436, 554, 670, 782
ScrFI	CCNGG	2 cut(s)	570, 718
SfaNI	GCATC	1 cut(s)	45
SinI	GGWCC	1 cut(s)	218
Sse9I	AATT	3 cut(s)	34, 310, 679
SsiI	CCGC	2 cut(s)	320, 518
SspMI	CTAG	3 cut(s)	483, 503, 657
StyD4I	CCNGG	2 cut(s)	568, 716
StyI	CCWWGG	1 cut(s)	656
TaaI	ACNGT	4 cut(s)	152, 173, 287, 389
TaiI	ACGT	2 cut(s)	451, 474
TaqI	TCGA	4 cut(s)	243, 275, 353, 461
TasI	AATT	3 cut(s)	34, 310, 679
TauI	GCSGC	1 cut(s)	521
TfiI	GAWTC	5 cut(s)	14, 44, 236, 379, 403
Tru1I	TTAA	2 cut(s)	314, 783
Tru9I	TTAA	2 cut(s)	314, 783
TscAI	CASTG	1 cut(s)	292
TseFI	GTSAC	1 cut(s)	557
TseI	GCWGC	2 cut(s)	326, 607
Tsp45I	GTSAC	1 cut(s)	557
TspDTI	ATGAA	5 cut(s)	57, 99, 210, 371, 647
TspGWI	ACGGA	5 cut(s)	63, 69, 75, 198, 636
TspRI	CASTG	1 cut(s)	292
Tth111I	GACNNNGTC	1 cut(s)	688
Van91I	CCANNNNNTGG	1 cut(s)	452
VpaK11BI	GGWCC	1 cut(s)	218
XmaJI	CCTAGG	1 cut(s)	656
XspI	CTAG	3 cut(s)	483, 503, 657
Zsp2I	ATGCAT	1 cut(s)	60

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.