Rmu_sc0005381.1_g000003

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005381.1
OG0000728
Physical Location & Seq
Reverse (-)
34426 .. 35757
1332 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0005381.1_g000003.1.cds

Sequence Viewer

Length: 954 bp
atgtcgatcgcattggataggatcggtgatgtcacgccctcgtctggcttcatgcacggtggggccatgtcttttggcttgatattcgagtcgtcgccgggagaggatagagctccggccgttgcgtcttcctcgtcgacgtcgtcgtcatcgattgggaagaacagcgacgggttgtcggacgaaggcgacgaggaaaatgacgaggctcagagctcgtataatggtcctttggatatgatggaggctttggaggaggttttgcctatcaggttagaaccgaacttccattttctttttctgcgatttttggagtcgtcgccgggagaggatagagctccggccgttgcgtcttcctcgtcgacgtcgtcgtcatcgattgggaagaacagcgacgggttgtcggacgaaggcgacgaggaaaatgacgaggctcagagctcgtataatggtggtcctttggatatgatggaggctttggaggaggttttgcctatcaggagaggcatctccaagttctataactacaaatccaagtccttcacgagtctggcagatgtttcaacttcttcctccattaaagagattgcgaagccagataatgcctataccaggaaacgcaggaacctgctcgcttcgaatctcatctgggacaagaatcggaattccccactgagttgtaggggtgggatatcaaagtcctcctcaaagagaacaatcaccgcaagtcaaagcaccttggctttggccgtggcaatgtgcagctcggaagccagtcccagtacaagtggtgattccaattcaagttcccttactcctccatccttcaataaactcggaaatcacgttgcttggcgatcattatccttggctgatttgcaagaatgtgccacttctgcagctgtaaataccacttctcgcttctttccttcaaaaccaaatttgcagccctga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

317

Amino Acids

33.67

Weight (kDa)

4.77

Isoelectric Point (pI)

64.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 145, 370
AatII GACGTC 2 cut(s) 143, 368
Acc36I ACCTGC 1 cut(s) 636
AccI GTMKAC 2 cut(s) 137, 362
AciI CCGC 1 cut(s) 723
AclWI GGATC 1 cut(s) 29
AcoI YGGCCR 3 cut(s) 117, 342, 747
AcsI RAATTY 2 cut(s) 664, 940
AcyI GRCGYC 2 cut(s) 140, 365
AfaI GTAC 1 cut(s) 784
AfiI CCNNNNNNNGG 2 cut(s) 44, 612
AgsI TTSAA 4 cut(s) 564, 804, 829, 933
AhdI GACNNNNNGTC 2 cut(s) 175, 400
AjnI CCWGG 1 cut(s) 611
AloI GAACNNNNNNTCC 2 cut(s) 270, 302
AluBI AGCT 6 cut(s) 113, 216, 338, 441, 765, 902
AluI AGCT 6 cut(s) 113, 216, 338, 441, 765, 902
Alw21I GWGCWC 4 cut(s) 115, 218, 340, 443
AlwI GGATC 1 cut(s) 29
AoxI GGCC 4 cut(s) 63, 117, 342, 747
ApeKI GCWGC 3 cut(s) 762, 899, 946
ApoI RAATTY 2 cut(s) 664, 940
AspS9I GGNCC 3 cut(s) 63, 227, 455
AsuC2I CCSGG 2 cut(s) 99, 324
AsuHPI GGTGA 3 cut(s) 38, 712, 803
AsuII TTCGAA 1 cut(s) 638
AvaII GGWCC 2 cut(s) 227, 455
BanII GRGCYC 4 cut(s) 115, 218, 340, 443
BauI CACGAG 1 cut(s) 544
BbsI GAAGAC 2 cut(s) 120, 345
Bbv12I GWGCWC 4 cut(s) 115, 218, 340, 443
BbvI GCAGC 2 cut(s) 774, 911
BccI CCATC 3 cut(s) 235, 463, 829
BceAI ACGGC 3 cut(s) 104, 329, 734
BciT130I CCWGG 1 cut(s) 613
BcnI CCSGG 2 cut(s) 99, 324
BfmI CTRYAG 1 cut(s) 897
BfuAI ACCTGC 1 cut(s) 636
BisI GCNGC 3 cut(s) 763, 900, 947
BlsI GCNGC 3 cut(s) 764, 901, 948
Bme1390I CCNGG 3 cut(s) 99, 324, 613
Bme18I GGWCC 2 cut(s) 227, 455
BmeRI GACNNNNNGTC 2 cut(s) 175, 400
BmgT120I GGNCC 3 cut(s) 63, 227, 455
BmiI GGNNCC 2 cut(s) 64, 626
BmrFI CCNGG 3 cut(s) 99, 324, 613
BmrI ACTGGG 1 cut(s) 774
BmsI GCATC 1 cut(s) 516
BmuI ACTGGG 1 cut(s) 774
BpiI GAAGAC 2 cut(s) 120, 345
Bpu14I TTCGAA 1 cut(s) 638
BpuMI CCSGG 2 cut(s) 99, 324
Bsa29I ATCGAT 2 cut(s) 152, 377
BsaBI GATNNNNATC 1 cut(s) 862
BsaHI GRCGYC 2 cut(s) 140, 365
BsaJI CCNNGG 3 cut(s) 738, 750, 867
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 612
Bse1I ACTGG 2 cut(s) 774, 780
Bse3DI GCAATG 1 cut(s) 762
Bse8I GATNNNNATC 1 cut(s) 862
BseBI CCWGG 1 cut(s) 613
BseCI ATCGAT 2 cut(s) 152, 377
BseDI CCNNGG 3 cut(s) 738, 750, 867
BseGI GGATG 1 cut(s) 821
BseJI GATNNNNATC 1 cut(s) 862
BseLI CCNNNNNNNGG 2 cut(s) 44, 612
BseMI GCAATG 1 cut(s) 762
BseMII CTCAG 3 cut(s) 224, 449, 665
BseNI ACTGG 2 cut(s) 774, 780
BseRI GAGGAG 4 cut(s) 269, 497, 694, 807
BseX3I CGGCCG 2 cut(s) 117, 342
BseXI GCAGC 2 cut(s) 774, 911
BsgI GTGCAG 1 cut(s) 781
Bsh1285I CGRYCG 3 cut(s) 9, 120, 345
BshFI GGCC 4 cut(s) 65, 119, 344, 749
BshVI ATCGAT 2 cut(s) 152, 377
BsiEI CGRYCG 3 cut(s) 9, 120, 345
BsiHKAI GWGCWC 4 cut(s) 115, 218, 340, 443
BsiSI CCGG 4 cut(s) 98, 116, 323, 341
BslFI GGGAC 2 cut(s) 665, 762
BslI CCNNNNNNNGG 2 cut(s) 44, 612
BsmFI GGGAC 2 cut(s) 665, 762
BsnI GGCC 4 cut(s) 65, 119, 344, 749
Bsp119I TTCGAA 1 cut(s) 638
Bsp1286I GDGCHC 4 cut(s) 115, 218, 340, 443
Bsp143I GATC 3 cut(s) 6, 21, 857
BspACI CCGC 1 cut(s) 723
BspANI GGCC 4 cut(s) 65, 119, 344, 749
BspCNI CTCAG 3 cut(s) 223, 448, 666
BspDI ATCGAT 2 cut(s) 152, 377
BspLI GGNNCC 2 cut(s) 64, 626
BspMAI CTGCAG 1 cut(s) 901
BspMI ACCTGC 1 cut(s) 636
BspPI GGATC 1 cut(s) 29
BspT104I TTCGAA 1 cut(s) 638
BsrDI GCAATG 1 cut(s) 762
BsrI ACTGG 2 cut(s) 774, 780
BssECI CCNNGG 3 cut(s) 738, 750, 867
BssMI GATC 3 cut(s) 6, 21, 857
BssNI GRCGYC 2 cut(s) 140, 365
BssSI CACGAG 1 cut(s) 544
BssT1I CCWWGG 2 cut(s) 738, 867
Bst2BI CACGAG 1 cut(s) 544
Bst2UI CCWGG 1 cut(s) 613
Bst4CI ACNGT 1 cut(s) 59
BstACI GRCGYC 2 cut(s) 140, 365
BstBI TTCGAA 1 cut(s) 638
BstC8I GCNNGC 1 cut(s) 633
BstDEI CTNAG 3 cut(s) 210, 435, 674
BstDSI CCRYGG 1 cut(s) 750
BstENI CCTNNNNNAGG 1 cut(s) 610
BstF5I GGATG 1 cut(s) 821
BstKTI GATC 3 cut(s) 9, 24, 860
BstMBI GATC 3 cut(s) 6, 21, 857
BstMCI CGRYCG 3 cut(s) 9, 120, 345
BstMWI GCNNNNNNNGC 1 cut(s) 896
BstNI CCWGG 1 cut(s) 613
BstSCI CCNGG 3 cut(s) 97, 322, 611
BstSFI CTRYAG 1 cut(s) 897
BstV1I GCAGC 2 cut(s) 774, 911
BstV2I GAAGAC 2 cut(s) 120, 345
BstZI CGGCCG 2 cut(s) 117, 342
Bsu15I ATCGAT 2 cut(s) 152, 377
BsuRI GGCC 4 cut(s) 65, 119, 344, 749
BsuTUI ATCGAT 2 cut(s) 152, 377
BtgI CCRYGG 1 cut(s) 750
BtsCI GGATG 1 cut(s) 821
BtsIMutI CAGTG 1 cut(s) 671
BveI ACCTGC 1 cut(s) 636
Cac8I GCNNGC 1 cut(s) 633
Cfr13I GGNCC 3 cut(s) 63, 227, 455
ClaI ATCGAT 2 cut(s) 152, 377
CseI GACGC 2 cut(s) 114, 339
Csp6I GTAC 1 cut(s) 783
CviAII CATG 2 cut(s) 52, 67
CviQI GTAC 1 cut(s) 783
DdeI CTNAG 3 cut(s) 210, 435, 674
DpnI GATC 3 cut(s) 8, 23, 859
DpnII GATC 3 cut(s) 6, 21, 857
DrdI GACNNNNNNGTC 2 cut(s) 145, 370
DriI GACNNNNNGTC 2 cut(s) 175, 400
DseDI GACNNNNNNGTC 2 cut(s) 145, 370
EaeI YGGCCR 3 cut(s) 117, 342, 747
EagI CGGCCG 2 cut(s) 117, 342
Eam1105I GACNNNNNGTC 2 cut(s) 175, 400
Ecl136II GAGCTC 4 cut(s) 113, 216, 338, 441
EclXI CGGCCG 2 cut(s) 117, 342
Eco130I CCWWGG 2 cut(s) 738, 867
Eco24I GRGCYC 4 cut(s) 115, 218, 340, 443
Eco32I GATATC 1 cut(s) 693
Eco47I GGWCC 2 cut(s) 227, 455
Eco52I CGGCCG 2 cut(s) 117, 342
Eco53kI GAGCTC 4 cut(s) 113, 216, 338, 441
EcoICRI GAGCTC 4 cut(s) 113, 216, 338, 441
EcoNI CCTNNNNNAGG 1 cut(s) 610
EcoRI GAATTC 1 cut(s) 664
EcoRII CCWGG 1 cut(s) 611
EcoRV GATATC 1 cut(s) 693
EcoT14I CCWWGG 2 cut(s) 738, 867
EcoT38I GRGCYC 4 cut(s) 115, 218, 340, 443
ErhI CCWWGG 2 cut(s) 738, 867
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 8 cut(s) 53, 68, 222, 239, 447, 467, 522, 609
FaqI GGGAC 2 cut(s) 665, 762
FatI CATG 2 cut(s) 51, 66
FblI GTMKAC 2 cut(s) 137, 362
Fnu4HI GCNGC 3 cut(s) 763, 900, 947
FokI GGATG 1 cut(s) 808
FriOI GRGCYC 4 cut(s) 115, 218, 340, 443
Fsp4HI GCNGC 3 cut(s) 763, 900, 947
GluI GCNGC 3 cut(s) 763, 900, 947
HaeIII GGCC 4 cut(s) 65, 119, 344, 749
HapII CCGG 4 cut(s) 98, 116, 323, 341
HgaI GACGC 2 cut(s) 114, 339
Hin1I GRCGYC 2 cut(s) 140, 365
Hin1II CATG 2 cut(s) 55, 70
HincII GTYRAC 2 cut(s) 138, 363
HindII GTYRAC 2 cut(s) 138, 363
HinfI GANTC 6 cut(s) 89, 314, 547, 640, 658, 794
HpaII CCGG 4 cut(s) 98, 116, 323, 341
HphI GGTGA 3 cut(s) 38, 712, 803
Hpy166II GTNNAC 2 cut(s) 138, 363
Hpy188I TCNGA 7 cut(s) 181, 213, 406, 438, 663, 769, 839
Hpy188III TCNNGA 2 cut(s) 499, 544
Hpy8I GTNNAC 2 cut(s) 138, 363
HpyAV CCTTC 5 cut(s) 179, 404, 550, 835, 939
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 3 cut(s) 140, 365, 846
HpyCH4V TGCA 5 cut(s) 55, 762, 880, 899, 946
HpyF10VI GCNNNNNNNGC 1 cut(s) 896
HpyF3I CTNAG 3 cut(s) 210, 435, 674
HpySE526I ACGT 3 cut(s) 140, 365, 846
Hsp92I GRCGYC 2 cut(s) 140, 365
Hsp92II CATG 2 cut(s) 55, 70
Kzo9I GATC 3 cut(s) 6, 21, 857
LmnI GCTCC 2 cut(s) 118, 343
Lsp1109I GCAGC 2 cut(s) 774, 911
LweI GCATC 1 cut(s) 516
MaeII ACGT 3 cut(s) 140, 365, 846
MaeIII GTNAC 1 cut(s) 31
MalI GATC 3 cut(s) 8, 23, 859
MboI GATC 3 cut(s) 6, 21, 857
MboII GAAGA 5 cut(s) 120, 172, 345, 397, 561
MhlI GDGCHC 4 cut(s) 115, 218, 340, 443
MluCI AATT 3 cut(s) 664, 799, 940
MlyI GAGTC 3 cut(s) 98, 323, 556
MmeI TCCRAC 2 cut(s) 159, 384
MseI TTAA 1 cut(s) 579
MspA1I CMGCKG 1 cut(s) 902
MspI CCGG 4 cut(s) 98, 116, 323, 341
MspR9I CCNGG 3 cut(s) 99, 324, 613
MvaI CCWGG 1 cut(s) 613
MwoI GCNNNNNNNGC 1 cut(s) 896
NciI CCSGG 2 cut(s) 99, 324
NdeII GATC 3 cut(s) 6, 21, 857
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 2 cut(s) 64, 626
NmuCI GTSAC 1 cut(s) 31
NspV TTCGAA 1 cut(s) 638
PcsI WCGNNNNNNNCGW 9 cut(s) 140, 143, 149, 189, 365, 368, 374, 414, 843
PfeI GAWTC 3 cut(s) 640, 658, 794
PflFI GACNNNGTC 2 cut(s) 142, 367
PkrI GCNGC 3 cut(s) 764, 901, 948
Ple19I CGATCG 1 cut(s) 9
PleI GAGTC 3 cut(s) 97, 322, 555
PpsI GAGTC 3 cut(s) 97, 322, 555
Psp124BI GAGCTC 4 cut(s) 115, 218, 340, 443
Psp6I CCWGG 1 cut(s) 611
PspGI CCWGG 1 cut(s) 611
PspN4I GGNNCC 2 cut(s) 64, 626
PspPI GGNCC 3 cut(s) 63, 227, 455
PstI CTGCAG 1 cut(s) 901
PsyI GACNNNGTC 2 cut(s) 142, 367
PvuI CGATCG 1 cut(s) 9
PvuII CAGCTG 1 cut(s) 902
RsaI GTAC 1 cut(s) 784
RsaNI GTAC 1 cut(s) 783
SacI GAGCTC 4 cut(s) 115, 218, 340, 443
SalI GTCGAC 2 cut(s) 136, 361
SaqAI TTAA 1 cut(s) 579
SatI GCNGC 3 cut(s) 763, 900, 947
Sau3AI GATC 3 cut(s) 6, 21, 857
Sau96I GGNCC 3 cut(s) 63, 227, 455
SchI GAGTC 3 cut(s) 98, 323, 556
ScrFI CCNGG 3 cut(s) 99, 324, 613
SduI GDGCHC 4 cut(s) 115, 218, 340, 443
SfaNI GCATC 1 cut(s) 516
SfcI CTRYAG 1 cut(s) 897
SfuI TTCGAA 1 cut(s) 638
SgrDI CGTCGACG 2 cut(s) 136, 361
SinI GGWCC 2 cut(s) 227, 455
Sse9I AATT 3 cut(s) 664, 799, 940
SsiI CCGC 1 cut(s) 723
SstI GAGCTC 4 cut(s) 115, 218, 340, 443
StyD4I CCNGG 3 cut(s) 97, 322, 611
StyI CCWWGG 2 cut(s) 738, 867
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 3 cut(s) 143, 368, 849
TaqI TCGA 7 cut(s) 5, 87, 137, 152, 362, 377, 638
TasI AATT 3 cut(s) 664, 799, 940
TatI WGTACW 1 cut(s) 782
TfiI GAWTC 3 cut(s) 640, 658, 794
Tru1I TTAA 1 cut(s) 579
Tru9I TTAA 1 cut(s) 579
TscAI CASTG 1 cut(s) 678
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 3 cut(s) 762, 899, 946
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 678
Tth111I GACNNNGTC 2 cut(s) 142, 367
VpaK11BI GGWCC 2 cut(s) 227, 455
XagI CCTNNNNNAGG 1 cut(s) 610
XapI RAATTY 2 cut(s) 664, 940
XmiI GTMKAC 2 cut(s) 137, 362
ZraI GACGTC 2 cut(s) 141, 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.