Rroxscaffold_7G00157190

RNA binding

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0000728
Physical Location & Seq
Forward (+)
970274 .. 971780
1507 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00157190.1

Sequence Viewer

Length: 723 bp
ATGTCGATCGCATTGGATAGGGTCGGTGATGTCGCGCCCTCGTCTGGCTTCATGCACGGTGGGGCCATGTCGTTTGGCTTGATATTCGAGTCGTCGCCGGGAGAGGATAGAGCTCCGGCCGTTGCGTCTTCCTCGTCGACGTCGTCGTCTTCGATCGGGAAGAACAGCGACGTGTTGTCGGACGAAGGCGACGAGGAAAATGACGAGGCTCAGAGCTTGTATAATGGTCCTTTGGATATGATGGAGGCTTTGGAGGAGGTTTTGCCTATCAGGAGAGGCATCTCGAAGTTCTATAACTACAAATCCAAGTCCTTCACGAGTCTGGCAGATGTTTCAACTTCTTCCTCTATTAAAGAGATTGCGAAGCCAGATAATGCCTATACCAGGAAACGCAGGAACCTGCTCGCTTCGAATCTCATCTGGGACAAGAATCGGAATTCCCCACTGAGTTGTAGGGGTGGGATATCAAAGTCCTCAAAGAGAACAATCACCGCAAGTCAAAGCACGTTGGCTTTGGCCGTGGCAATGTGCAGCTCGGAAACCAGTCCCAGTACAAGTGGTGATTCCAATTCAAGTTCTCTTACTCCTCCATCCTTCAATAAACTAGGAAATCACGTTGCTTGGCGATCCTTATCCTTGGCTGATTTGCAAGAATGTGCCACTTCTGCAGCTGTAAATACCACTTCTCGCTTCTTTCCTTCAAAACCAAATTTGCAGCCCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

240

Amino Acids

25.49

Weight (kDa)

6.16

Isoelectric Point (pI)

65.62

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 145
AatII GACGTC 1 cut(s) 143
Acc36I ACCTGC 1 cut(s) 408
AccI GTMKAC 1 cut(s) 137
AccII CGCG 1 cut(s) 35
AciI CCGC 1 cut(s) 492
AclWI GGATC 1 cut(s) 621
AcoI YGGCCR 2 cut(s) 117, 516
AcsI RAATTY 2 cut(s) 436, 709
AcyI GRCGYC 1 cut(s) 140
AfaI GTAC 1 cut(s) 553
AfiI CCNNNNNNNGG 2 cut(s) 44, 384
AflIII ACRYGT 1 cut(s) 171
AgsI TTSAA 4 cut(s) 336, 573, 598, 702
AhdI GACNNNNNGTC 1 cut(s) 175
AjiI CACGTC 1 cut(s) 172
AjnI CCWGG 1 cut(s) 383
AluBI AGCT 4 cut(s) 113, 216, 534, 671
AluI AGCT 4 cut(s) 113, 216, 534, 671
Alw21I GWGCWC 1 cut(s) 115
AlwI GGATC 1 cut(s) 621
AoxI GGCC 3 cut(s) 63, 117, 516
ApeKI GCWGC 3 cut(s) 531, 668, 715
ApoI RAATTY 2 cut(s) 436, 709
AspLEI GCGC 1 cut(s) 37
AspS9I GGNCC 2 cut(s) 63, 227
AsuC2I CCSGG 1 cut(s) 99
AsuHPI GGTGA 3 cut(s) 38, 481, 572
AsuII TTCGAA 1 cut(s) 410
AvaII GGWCC 1 cut(s) 227
BanII GRGCYC 1 cut(s) 115
BauI CACGAG 1 cut(s) 316
BbsI GAAGAC 2 cut(s) 120, 141
Bbv12I GWGCWC 1 cut(s) 115
BbvI GCAGC 2 cut(s) 543, 680
BccI CCATC 2 cut(s) 235, 598
BceAI ACGGC 2 cut(s) 104, 503
BciT130I CCWGG 1 cut(s) 385
BcnI CCSGG 1 cut(s) 99
BfaI CTAG 1 cut(s) 605
BfmI CTRYAG 1 cut(s) 666
BfuAI ACCTGC 1 cut(s) 408
BisI GCNGC 3 cut(s) 532, 669, 716
BlsI GCNGC 3 cut(s) 533, 670, 717
Bme1390I CCNGG 2 cut(s) 99, 385
Bme18I GGWCC 1 cut(s) 227
BmeRI GACNNNNNGTC 1 cut(s) 175
BmgBI CACGTC 1 cut(s) 172
BmgT120I GGNCC 2 cut(s) 63, 227
BmiI GGNNCC 2 cut(s) 64, 398
BmrFI CCNGG 2 cut(s) 99, 385
BmrI ACTGGG 1 cut(s) 543
BmsI GCATC 1 cut(s) 288
BmuI ACTGGG 1 cut(s) 543
BpiI GAAGAC 2 cut(s) 120, 141
Bpu14I TTCGAA 1 cut(s) 410
BpuMI CCSGG 1 cut(s) 99
BsaBI GATNNNNATC 1 cut(s) 631
BsaHI GRCGYC 1 cut(s) 140
BsaJI CCNNGG 2 cut(s) 519, 636
Bsc4I CCNNNNNNNGG 2 cut(s) 44, 384
Bse1I ACTGG 2 cut(s) 543, 549
Bse3DI GCAATG 1 cut(s) 531
Bse8I GATNNNNATC 1 cut(s) 631
BseBI CCWGG 1 cut(s) 385
BseDI CCNNGG 2 cut(s) 519, 636
BseGI GGATG 1 cut(s) 590
BseJI GATNNNNATC 1 cut(s) 631
BseLI CCNNNNNNNGG 2 cut(s) 44, 384
BseMI GCAATG 1 cut(s) 531
BseMII CTCAG 2 cut(s) 224, 437
BseNI ACTGG 2 cut(s) 543, 549
BseRI GAGGAG 2 cut(s) 269, 576
BseX3I CGGCCG 1 cut(s) 117
BseXI GCAGC 2 cut(s) 543, 680
BsgI GTGCAG 1 cut(s) 550
Bsh1236I CGCG 1 cut(s) 35
Bsh1285I CGRYCG 3 cut(s) 9, 120, 156
BshFI GGCC 3 cut(s) 65, 119, 518
BsiEI CGRYCG 3 cut(s) 9, 120, 156
BsiHKAI GWGCWC 1 cut(s) 115
BsiSI CCGG 2 cut(s) 98, 116
BslFI GGGAC 2 cut(s) 437, 531
BslI CCNNNNNNNGG 2 cut(s) 44, 384
BsmFI GGGAC 2 cut(s) 437, 531
BsnI GGCC 3 cut(s) 65, 119, 518
Bsp119I TTCGAA 1 cut(s) 410
Bsp1286I GDGCHC 1 cut(s) 115
Bsp143I GATC 3 cut(s) 6, 153, 626
BspACI CCGC 1 cut(s) 492
BspANI GGCC 3 cut(s) 65, 119, 518
BspCNI CTCAG 2 cut(s) 223, 438
BspFNI CGCG 1 cut(s) 35
BspLI GGNNCC 2 cut(s) 64, 398
BspMAI CTGCAG 1 cut(s) 670
BspMI ACCTGC 1 cut(s) 408
BspPI GGATC 1 cut(s) 621
BspT104I TTCGAA 1 cut(s) 410
BsrDI GCAATG 1 cut(s) 531
BsrI ACTGG 2 cut(s) 543, 549
BssECI CCNNGG 2 cut(s) 519, 636
BssMI GATC 3 cut(s) 6, 153, 626
BssNI GRCGYC 1 cut(s) 140
BssSI CACGAG 1 cut(s) 316
BssT1I CCWWGG 1 cut(s) 636
Bst2BI CACGAG 1 cut(s) 316
Bst2UI CCWGG 1 cut(s) 385
Bst4CI ACNGT 1 cut(s) 59
BstACI GRCGYC 1 cut(s) 140
BstBI TTCGAA 1 cut(s) 410
BstC8I GCNNGC 1 cut(s) 405
BstDEI CTNAG 2 cut(s) 210, 446
BstDSI CCRYGG 1 cut(s) 519
BstENI CCTNNNNNAGG 1 cut(s) 382
BstF5I GGATG 1 cut(s) 590
BstFNI CGCG 1 cut(s) 35
BstHHI GCGC 1 cut(s) 37
BstKTI GATC 3 cut(s) 9, 156, 629
BstMBI GATC 3 cut(s) 6, 153, 626
BstMCI CGRYCG 3 cut(s) 9, 120, 156
BstMWI GCNNNNNNNGC 1 cut(s) 665
BstNI CCWGG 1 cut(s) 385
BstSCI CCNGG 2 cut(s) 97, 383
BstSFI CTRYAG 1 cut(s) 666
BstUI CGCG 1 cut(s) 35
BstV1I GCAGC 2 cut(s) 543, 680
BstV2I GAAGAC 2 cut(s) 120, 141
BstZI CGGCCG 1 cut(s) 117
BsuRI GGCC 3 cut(s) 65, 119, 518
BtgI CCRYGG 1 cut(s) 519
BtrI CACGTC 1 cut(s) 172
BtsCI GGATG 1 cut(s) 590
BtsIMutI CAGTG 1 cut(s) 443
BveI ACCTGC 1 cut(s) 408
Cac8I GCNNGC 1 cut(s) 405
CfoI GCGC 1 cut(s) 37
Cfr13I GGNCC 2 cut(s) 63, 227
CseI GACGC 1 cut(s) 114
Csp6I GTAC 1 cut(s) 552
CviAII CATG 2 cut(s) 52, 67
CviQI GTAC 1 cut(s) 552
DdeI CTNAG 2 cut(s) 210, 446
DpnI GATC 3 cut(s) 8, 155, 628
DpnII GATC 3 cut(s) 6, 153, 626
DrdI GACNNNNNNGTC 1 cut(s) 145
DriI GACNNNNNGTC 1 cut(s) 175
DseDI GACNNNNNNGTC 1 cut(s) 145
EaeI YGGCCR 2 cut(s) 117, 516
EagI CGGCCG 1 cut(s) 117
Eam1105I GACNNNNNGTC 1 cut(s) 175
Ecl136II GAGCTC 1 cut(s) 113
EclXI CGGCCG 1 cut(s) 117
Eco130I CCWWGG 1 cut(s) 636
Eco24I GRGCYC 1 cut(s) 115
Eco32I GATATC 1 cut(s) 465
Eco47I GGWCC 1 cut(s) 227
Eco52I CGGCCG 1 cut(s) 117
Eco53kI GAGCTC 1 cut(s) 113
EcoICRI GAGCTC 1 cut(s) 113
EcoNI CCTNNNNNAGG 1 cut(s) 382
EcoRI GAATTC 1 cut(s) 436
EcoRII CCWGG 1 cut(s) 383
EcoRV GATATC 1 cut(s) 465
EcoT14I CCWWGG 1 cut(s) 636
EcoT38I GRGCYC 1 cut(s) 115
ErhI CCWWGG 1 cut(s) 636
FaeI CATG 2 cut(s) 55, 70
FaiI YATR 6 cut(s) 53, 68, 222, 239, 294, 381
FaqI GGGAC 2 cut(s) 437, 531
FatI CATG 2 cut(s) 51, 66
FblI GTMKAC 1 cut(s) 137
Fnu4HI GCNGC 3 cut(s) 532, 669, 716
FokI GGATG 1 cut(s) 577
FriOI GRGCYC 1 cut(s) 115
Fsp4HI GCNGC 3 cut(s) 532, 669, 716
FspBI CTAG 1 cut(s) 605
GlaI GCGC 1 cut(s) 36
GluI GCNGC 3 cut(s) 532, 669, 716
HaeIII GGCC 3 cut(s) 65, 119, 518
HapII CCGG 2 cut(s) 98, 116
HgaI GACGC 1 cut(s) 114
HhaI GCGC 1 cut(s) 37
Hin1I GRCGYC 1 cut(s) 140
Hin1II CATG 2 cut(s) 55, 70
Hin6I GCGC 1 cut(s) 35
HinP1I GCGC 1 cut(s) 35
HincII GTYRAC 1 cut(s) 138
HindII GTYRAC 1 cut(s) 138
HinfI GANTC 5 cut(s) 89, 319, 412, 430, 563
HpaII CCGG 2 cut(s) 98, 116
HphI GGTGA 3 cut(s) 38, 481, 572
Hpy166II GTNNAC 1 cut(s) 138
Hpy188I TCNGA 4 cut(s) 181, 213, 435, 538
Hpy188III TCNNGA 4 cut(s) 157, 271, 283, 316
Hpy8I GTNNAC 1 cut(s) 138
Hpy99I CGWCG 7 cut(s) 97, 139, 142, 145, 148, 173, 194
HpyAV CCTTC 4 cut(s) 179, 322, 604, 708
HpyCH4III ACNGT 1 cut(s) 59
HpyCH4IV ACGT 4 cut(s) 140, 171, 506, 615
HpyCH4V TGCA 5 cut(s) 55, 531, 649, 668, 715
HpyF10VI GCNNNNNNNGC 1 cut(s) 665
HpyF3I CTNAG 2 cut(s) 210, 446
HpySE526I ACGT 4 cut(s) 140, 171, 506, 615
Hsp92I GRCGYC 1 cut(s) 140
Hsp92II CATG 2 cut(s) 55, 70
HspAI GCGC 1 cut(s) 35
Kzo9I GATC 3 cut(s) 6, 153, 626
LmnI GCTCC 1 cut(s) 118
Lsp1109I GCAGC 2 cut(s) 543, 680
LweI GCATC 1 cut(s) 288
MaeI CTAG 1 cut(s) 605
MaeII ACGT 4 cut(s) 140, 171, 506, 615
MalI GATC 3 cut(s) 8, 155, 628
MboI GATC 3 cut(s) 6, 153, 626
MboII GAAGA 4 cut(s) 120, 141, 172, 333
MhlI GDGCHC 1 cut(s) 115
MluCI AATT 3 cut(s) 436, 568, 709
MlyI GAGTC 2 cut(s) 98, 328
MmeI TCCRAC 1 cut(s) 159
MseI TTAA 1 cut(s) 351
MspA1I CMGCKG 1 cut(s) 671
MspI CCGG 2 cut(s) 98, 116
MspR9I CCNGG 2 cut(s) 99, 385
MvaI CCWGG 1 cut(s) 385
MvnI CGCG 1 cut(s) 35
MwoI GCNNNNNNNGC 1 cut(s) 665
NciI CCSGG 1 cut(s) 99
NdeII GATC 3 cut(s) 6, 153, 626
NlaIII CATG 2 cut(s) 55, 70
NlaIV GGNNCC 2 cut(s) 64, 398
NspV TTCGAA 1 cut(s) 410
PcsI WCGNNNNNNNCGW 4 cut(s) 140, 143, 149, 189
PfeI GAWTC 3 cut(s) 412, 430, 563
PflFI GACNNNGTC 1 cut(s) 142
PkrI GCNGC 3 cut(s) 533, 670, 717
Ple19I CGATCG 2 cut(s) 9, 156
PleI GAGTC 2 cut(s) 97, 327
PpsI GAGTC 2 cut(s) 97, 327
Psp124BI GAGCTC 1 cut(s) 115
Psp6I CCWGG 1 cut(s) 383
PspGI CCWGG 1 cut(s) 383
PspN4I GGNNCC 2 cut(s) 64, 398
PspPI GGNCC 2 cut(s) 63, 227
PstI CTGCAG 1 cut(s) 670
PsyI GACNNNGTC 1 cut(s) 142
PvuI CGATCG 2 cut(s) 9, 156
PvuII CAGCTG 1 cut(s) 671
RsaI GTAC 1 cut(s) 553
RsaNI GTAC 1 cut(s) 552
SacI GAGCTC 1 cut(s) 115
SalI GTCGAC 1 cut(s) 136
SaqAI TTAA 1 cut(s) 351
SatI GCNGC 3 cut(s) 532, 669, 716
Sau3AI GATC 3 cut(s) 6, 153, 626
Sau96I GGNCC 2 cut(s) 63, 227
SchI GAGTC 2 cut(s) 98, 328
ScrFI CCNGG 2 cut(s) 99, 385
SduI GDGCHC 1 cut(s) 115
SfaNI GCATC 1 cut(s) 288
SfcI CTRYAG 1 cut(s) 666
SfuI TTCGAA 1 cut(s) 410
SgrDI CGTCGACG 1 cut(s) 136
SinI GGWCC 1 cut(s) 227
Sse9I AATT 3 cut(s) 436, 568, 709
SsiI CCGC 1 cut(s) 492
SspMI CTAG 1 cut(s) 605
SstI GAGCTC 1 cut(s) 115
StyD4I CCNGG 2 cut(s) 97, 383
StyI CCWWGG 1 cut(s) 636
TaaI ACNGT 1 cut(s) 59
TaiI ACGT 4 cut(s) 143, 174, 509, 618
TaqI TCGA 6 cut(s) 5, 87, 137, 152, 284, 410
TasI AATT 3 cut(s) 436, 568, 709
TatI WGTACW 1 cut(s) 551
TfiI GAWTC 3 cut(s) 412, 430, 563
Tru1I TTAA 1 cut(s) 351
Tru9I TTAA 1 cut(s) 351
TscAI CASTG 1 cut(s) 450
TseI GCWGC 3 cut(s) 531, 668, 715
TspDTI ATGAA 1 cut(s) 40
TspRI CASTG 1 cut(s) 450
Tth111I GACNNNGTC 1 cut(s) 142
VpaK11BI GGWCC 1 cut(s) 227
XagI CCTNNNNNAGG 1 cut(s) 382
XapI RAATTY 2 cut(s) 436, 709
XmiI GTMKAC 1 cut(s) 137
XspI CTAG 1 cut(s) 605
ZraI GACGTC 1 cut(s) 141
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.